Sed0017040 (gene) Chayote v1

Overview


Name	Sed0017040
Type	gene
Organism	Sechium edule (Chayote v1)
Description	zinc finger CCCH domain-containing protein 20-like
Location	LG13: 23420974 .. 23422276 (+)
RNA-Seq Expression	Sed0017040
Synteny	Sed0017040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACCTAACCCTTCTGTTTCCCCCTTGGGTTTATATGTTCCCATCCAAATCCCCTTCTCTTCATTCACAAACCCCACCTCCCACTACCAAAAACAAAACATGATCGGCGAACATTCTAGATTTCATCAAACCATCCAAATCCCCCAATGGGACCCACTCGCCGGAATTCCCTCCTCCGCCGACGACGACCACTTCCACATGTTCGAGTTCAAAATCCGCAAATGCGCACGTGGGAGGTCGCACGATTGGACCGACTGTCCCTACGCCCATTCCGGCGAGAAGGCTCGCCGCCGGGACCCCAAAAAGTGCCGCTACTCCGGCGAGGCCTGCCCGGAGTTCCGAAAGGGGAACTGCAAGAAAGGCGATTCTTGCGATCTCGCTCACGGGATTTTCGAGTGTTGGCTCCACCCGACCCGCTACCGGACTCAGCCGTGCAAGGACGGCCTCGCCTGCCGCCGCCGTGTCTGTTTCTTCGCCCACTCGCCGGACCAGCTCCGGATTCCGCCGCTTTCCGGTGACCCCATGACTTCAATTCTAACCTCGCCCACTTCGATTCTTTCAAACCCGCTGCTCGATTCGCCTCCGATTTCCCCGAAACTCGCCGGTGGGTTGTTTCATTCGATGAATCGGCTTGTTTCTTCAATGGGTAGCCTTGAAATCGAGAAATTGAAATTAATTTCTCAATTCGGGGTTCAACTGGGCCGGAATTTGGGCTCTCCCGCCGGCGGCGGGTTCTACAGTTTCCCTGCGAGTCCGACCACCGGAAATTACGAACTATGGGGGAAAATTTACGAGGAAGAAGAACCTGTAATGGAAAGAGTGGAATCTGGGAAAAATCTACGAGCTAAAATGTATGAGAAATTAAGCAAAGACAACTCGGTTGAGCCTGCCGTGGATTCGACATTGACGCCGGATGTTGGATGGATTTCGGAGTTATTGATGTGAAAAAGGGGGGAATCTTCATCGGATTGAAATCGGCGGCGTTTCGGGTTTTTGATTGTGAATATGTATTTTGGAGGGTTTGTGTAAATTTGAAGGTTTTAATGGGGGGTTTTGATTTCTGAATTAACAGAGAGAAAATTGCTCTGTTTTTGCTCTGTTTTTTCTGTACATATTGATAGACGGAATTTTAGGCCGCCGAAGTAGTTACATAAGAAGGTTGTAGTCGGTTGGGCTTTTCATTTAATTGAAACTTTCAATTGTAATTTGTAATGATATTTTTCAAATTTTCTTTAAACTTTAATCTTCTGTTTAGCTGCATCAGACAATCAATTACTCTATGAAGTTGCAGGTTTATTTTT

mRNA sequence

AAAAACCTAACCCTTCTGTTTCCCCCTTGGGTTTATATGTTCCCATCCAAATCCCCTTCTCTTCATTCACAAACCCCACCTCCCACTACCAAAAACAAAACATGATCGGCGAACATTCTAGATTTCATCAAACCATCCAAATCCCCCAATGGGACCCACTCGCCGGAATTCCCTCCTCCGCCGACGACGACCACTTCCACATGTTCGAGTTCAAAATCCGCAAATGCGCACGTGGGAGGTCGCACGATTGGACCGACTGTCCCTACGCCCATTCCGGCGAGAAGGCTCGCCGCCGGGACCCCAAAAAGTGCCGCTACTCCGGCGAGGCCTGCCCGGAGTTCCGAAAGGGGAACTGCAAGAAAGGCGATTCTTGCGATCTCGCTCACGGGATTTTCGAGTGTTGGCTCCACCCGACCCGCTACCGGACTCAGCCGTGCAAGGACGGCCTCGCCTGCCGCCGCCGTGTCTGTTTCTTCGCCCACTCGCCGGACCAGCTCCGGATTCCGCCGCTTTCCGGTGACCCCATGACTTCAATTCTAACCTCGCCCACTTCGATTCTTTCAAACCCGCTGCTCGATTCGCCTCCGATTTCCCCGAAACTCGCCGGTGGGTTGTTTCATTCGATGAATCGGCTTGTTTCTTCAATGGGTAGCCTTGAAATCGAGAAATTGAAATTAATTTCTCAATTCGGGGTTCAACTGGGCCGGAATTTGGGCTCTCCCGCCGGCGGCGGGTTCTACAGTTTCCCTGCGAGTCCGACCACCGGAAATTACGAACTATGGGGGAAAATTTACGAGGAAGAAGAACCTGTAATGGAAAGAGTGGAATCTGGGAAAAATCTACGAGCTAAAATGTATGAGAAATTAAGCAAAGACAACTCGGTTGAGCCTGCCGTGGATTCGACATTGACGCCGGATGTTGGATGGATTTCGGAGTTATTGATGTGAAAAAGGGGGGAATCTTCATCGGATTGAAATCGGCGGCGTTTCGGGTTTTTGATTGTGAATATGTATTTTGGAGGGTTTGTGTAAATTTGAAGGTTTTAATGGGGGGTTTTGATTTCTGAATTAACAGAGAGAAAATTGCTCTGTTTTTGCTCTGTTTTTTCTGTACATATTGATAGACGGAATTTTAGGCCGCCGAAGTAGTTACATAAGAAGGTTGTAGTCGGTTGGGCTTTTCATTTAATTGAAACTTTCAATTGTAATTTGTAATGATATTTTTCAAATTTTCTTTAAACTTTAATCTTCTGTTTAGCTGCATCAGACAATCAATTACTCTATGAAGTTGCAGGTTTATTTTT

Coding sequence (CDS)

ATGATCGGCGAACATTCTAGATTTCATCAAACCATCCAAATCCCCCAATGGGACCCACTCGCCGGAATTCCCTCCTCCGCCGACGACGACCACTTCCACATGTTCGAGTTCAAAATCCGCAAATGCGCACGTGGGAGGTCGCACGATTGGACCGACTGTCCCTACGCCCATTCCGGCGAGAAGGCTCGCCGCCGGGACCCCAAAAAGTGCCGCTACTCCGGCGAGGCCTGCCCGGAGTTCCGAAAGGGGAACTGCAAGAAAGGCGATTCTTGCGATCTCGCTCACGGGATTTTCGAGTGTTGGCTCCACCCGACCCGCTACCGGACTCAGCCGTGCAAGGACGGCCTCGCCTGCCGCCGCCGTGTCTGTTTCTTCGCCCACTCGCCGGACCAGCTCCGGATTCCGCCGCTTTCCGGTGACCCCATGACTTCAATTCTAACCTCGCCCACTTCGATTCTTTCAAACCCGCTGCTCGATTCGCCTCCGATTTCCCCGAAACTCGCCGGTGGGTTGTTTCATTCGATGAATCGGCTTGTTTCTTCAATGGGTAGCCTTGAAATCGAGAAATTGAAATTAATTTCTCAATTCGGGGTTCAACTGGGCCGGAATTTGGGCTCTCCCGCCGGCGGCGGGTTCTACAGTTTCCCTGCGAGTCCGACCACCGGAAATTACGAACTATGGGGGAAAATTTACGAGGAAGAAGAACCTGTAATGGAAAGAGTGGAATCTGGGAAAAATCTACGAGCTAAAATGTATGAGAAATTAAGCAAAGACAACTCGGTTGAGCCTGCCGTGGATTCGACATTGACGCCGGATGTTGGATGGATTTCGGAGTTATTGATGTGA

Protein sequence

MIGEHSRFHQTIQIPQWDPLAGIPSSADDDHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPPLSGDPMTSILTSPTSILSNPLLDSPPISPKLAGGLFHSMNRLVSSMGSLEIEKLKLISQFGVQLGRNLGSPAGGGFYSFPASPTTGNYELWGKIYEEEEPVMERVESGKNLRAKMYEKLSKDNSVEPAVDSTLTPDVGWISELLM

Homology

[Close]

BLAST of Sed0017040 vs. NCBI nr
Match: XP_022977064.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 392.5 bits (1007), Expect = 3.1e-105
Identity = 208/352 (59.09%), Postives = 237/352 (67.33%), Query Frame = 0


Query: 1   MIGEHSRFHQTIQIPQWDP--------------LAG---------------IPSSADD-- 60
           MIGE SRF Q IQ+P WDP              + G               +PS+AD   
Sbjct: 1   MIGEQSRFTQAIQVPPWDPHEDHHSIGISSPVFIHGGLDSFIDSFSAIHRYLPSAADSTA 60

Query: 61  ----------DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPE 120
                     DHF MFEFKIR+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG ACPE
Sbjct: 61  AEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPE 120

Query: 121 FRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPP--- 180
           FRKGNCKKGDSCDLAHGIFECWLHP RYRTQPCKDGLACRRRVCFFAH P+QLR+ P   
Sbjct: 121 FRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQS 180

Query: 181 ---------LSGDPMT-----------SILTSPTSILS----NPLLDSPPIS---PKLAG 240
                    + G P             S++TSPTSI+S    +P  DSPP+S   P+L G
Sbjct: 181 PRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPMSPNCPQLGG 240

Query: 241 GLFHSMNRLVSSMGSLEIEKLKLISQFGVQLGRNLGSPAGGGFYSFPASPTTGNYELWGK 282
           G F+SM +L SS   L+I K K    +G+QLG+NL SP+G GFYS P++PTTG YELWGK
Sbjct: 241 GSFNSMTKLASS--HLKIGKSKATPHWGIQLGQNLRSPSGSGFYSLPSTPTTGKYELWGK 300

[Close]

BLAST of Sed0017040 vs. NCBI nr
Match: KAG6591452.1 (Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024333.1 Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392.1 bits (1006), Expect = 4.0e-105
Identity = 208/352 (59.09%), Postives = 237/352 (67.33%), Query Frame = 0


Query: 1   MIGEHSRFHQTIQIPQWDP--------------LAG---------------IPSSADD-- 60
           MIGE SRF  TIQ+P WDP              + G               +PS+AD   
Sbjct: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTA 60

Query: 61  ----------DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPE 120
                     DHF MFEFKIR+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG ACPE
Sbjct: 61  AEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPE 120

Query: 121 FRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPP--- 180
           FRKGNCKKGDSCDLAHGIFECWLHP RYRTQPCKDGLACRRRVCFFAH P+QLR+ P   
Sbjct: 121 FRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQS 180

Query: 181 ---------LSGDPMT-----------SILTSPTSILS----NPLLDSPPIS---PKLAG 240
                    + G P             S++TSPTSI+S    +P  DSPP+S   P+L G
Sbjct: 181 PRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQLGG 240

Query: 241 GLFHSMNRLVSSMGSLEIEKLKLISQFGVQLGRNLGSPAGGGFYSFPASPTTGNYELWGK 282
           G F+SM +L SS   L+I K K    +G+QLG+NL SP+G GFYS P++PTTG YELWGK
Sbjct: 241 GSFNSMTKLASS--HLKIGKSKATPHWGIQLGQNLLSPSGSGFYSLPSTPTTGKYELWGK 300

[Close]

BLAST of Sed0017040 vs. NCBI nr
Match: XP_023536445.1 (zinc finger CCCH domain-containing protein 23-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.1 bits (1006), Expect = 4.0e-105
Identity = 208/352 (59.09%), Postives = 237/352 (67.33%), Query Frame = 0


Query: 1   MIGEHSRFHQTIQIPQWDP--------------LAG---------------IPSSADD-- 60
           MIGE SRF  TIQ+P WDP              + G               +PS+AD   
Sbjct: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTA 60

Query: 61  ----------DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPE 120
                     DHF MFEFKIR+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG ACPE
Sbjct: 61  AEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPE 120

Query: 121 FRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPP--- 180
           FRKGNCKKGDSCDLAHGIFECWLHP RYRTQPCKDGLACRRRVCFFAH P+QLR+ P   
Sbjct: 121 FRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQS 180

Query: 181 ---------LSGDPMT-----------SILTSPTSILS----NPLLDSPPIS---PKLAG 240
                    + G P             S++TSPTSI+S    +P  DSPP+S   P+L G
Sbjct: 181 PRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQLGG 240

Query: 241 GLFHSMNRLVSSMGSLEIEKLKLISQFGVQLGRNLGSPAGGGFYSFPASPTTGNYELWGK 282
           G F+SM +L SS   L+I K K    +G+QLG+NL SP+G GFYS P++PTTG YELWGK
Sbjct: 241 GSFNSMTKLASS--HLKIGKSKATPHWGIQLGQNLLSPSGSGFYSLPSTPTTGKYELWGK 300

[Close]

BLAST of Sed0017040 vs. NCBI nr
Match: XP_022937190.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 391.3 bits (1004), Expect = 6.8e-105
Identity = 208/352 (59.09%), Postives = 237/352 (67.33%), Query Frame = 0


Query: 1   MIGEHSRFHQTIQIPQWDP--------------LAG---------------IPSSADD-- 60
           MIGE SRF  TIQ+P WDP              + G               +PS+AD   
Sbjct: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTA 60

Query: 61  ----------DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPE 120
                     DHF MFEFKIR+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG ACPE
Sbjct: 61  AEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPE 120

Query: 121 FRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPP--- 180
           FRKGNCKKGDSCDLAHGIFECWLHP RYRTQPCKDGLACRRRVCFFAH P+QLR+ P   
Sbjct: 121 FRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQS 180

Query: 181 ---------LSGDPMT-----------SILTSPTSILS----NPLLDSPPIS---PKLAG 240
                    + G P             S++TSPTSI+S    +P  DSPP+S   P+L G
Sbjct: 181 PRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQLGG 240

Query: 241 GLFHSMNRLVSSMGSLEIEKLKLISQFGVQLGRNLGSPAGGGFYSFPASPTTGNYELWGK 282
           G F+SM +L SS   L+I K K    +G+QLG+NL SP+G GFYS P++PTTG YELWGK
Sbjct: 241 GSFNSMTKLASS--HLKIGKSKAKPHWGIQLGQNLLSPSGSGFYSLPSTPTTGKYELWGK 300

[Close]

BLAST of Sed0017040 vs. NCBI nr
Match: XP_038900024.1 (zinc finger CCCH domain-containing protein 23-like [Benincasa hispida])

HSP 1 Score: 379.8 bits (974), Expect = 2.0e-101
Identity = 205/354 (57.91%), Postives = 234/354 (66.10%), Query Frame = 0


Query: 1   MIGEHSRFHQTIQIPQWDPLAG-----------------------------IPSSADD-- 60
           MIGE SRF+ TIQ+P WDPL                               +PS+AD   
Sbjct: 2   MIGEQSRFNHTIQVPPWDPLEDHHMTGISSPVFISGGVDSFIDSFSSIHRYLPSAADSDD 61

Query: 61  -------------DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEA 120
                        DHF MFEFKIR+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG A
Sbjct: 62  LDAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA 121

Query: 121 CPEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRI-- 180
           CPEFRKGNCKKGDSCD AHGIFECWLHP RYRTQPCKDGLACRRRVCFFAH+P+QLR+  
Sbjct: 122 CPEFRKGNCKKGDSCDFAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLP 181

Query: 181 -----PPLSGDPMT----------------SILTSPTSILSNPLL----DSPPISPKLAG 240
                 P+S D +                 S +TSPTSILS P +    DSPP+SP    
Sbjct: 182 QQSPRTPVSADSVDGSSRIAHAFDSYFAKGSFVTSPTSILSTPPVSPPSDSPPLSPNCP- 241

Query: 241 GLFHSMNRLVSSMGSLEIEKLKLISQFG-VQL-GRNLGSPAGGGFYSFPASPTTGNYELW 282
             F+SMN LVS M +L++ K K    +G +QL G+N  SP+G G YS P++PTTGNYELW
Sbjct: 242 --FNSMNGLVSCMRNLQLGKSKATPHWGRIQLGGQNPLSPSGSGLYSLPSTPTTGNYELW 301

[Close]

BLAST of Sed0017040 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.0e-75
Identity = 158/303 (52.15%), Postives = 199/303 (65.68%), Query Frame = 0


Query: 15  PQWDPLAGIPSSADD----DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKC 74
           P  DP    P S  D    DHF M+EFK+R+CARGRSHDWT+CPYAH GEKARRRDP+K 
Sbjct: 58  PDSDPDLSGPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKF 117

Query: 75  RYSGEACPEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPD 134
            YSG ACPEFRKG CK+GD+C+ +HG+FECWLHP RYRTQPCKDG  CRRRVCFFAHSPD
Sbjct: 118 HYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPD 177

Query: 135 QLRI-PPLSGDPMTSI-LTSPT-----SILSNPLLDSPPISPK---------LAGGLFHS 194
           Q+R+ P  S D + S  + SPT         +P  +SPP+SP+         L+  L  +
Sbjct: 178 QIRVLPNQSPDRVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSN 237

Query: 195 M-NRLVSSMGSLEIEKLK--LISQFGVQL---GRNLGSPAGG----GFYSFPASPT-TGN 254
           + N +V+S+ +L++ K+K  L S +  Q+   G   GSP G     GF S P +PT  G 
Sbjct: 238 LGNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGF 297

Query: 255 YELWGKIYEEEEPVMERVESGKNLRAKMYEKLSKDN---SVEPAVDSTL--TPDVGWISE 282
             +W     EEEP MERVESG+ LRA+++EKLSK+N    +EP  D     TPDVGW+S+
Sbjct: 298 MNIWENGL-EEEPAMERVESGRELRAQLFEKLSKENCMGRIEPDPDQGAGDTPDVGWVSD 357

[Close]

BLAST of Sed0017040 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 7.4e-70
Identity = 147/282 (52.13%), Postives = 185/282 (65.60%), Query Frame = 0


Query: 30  DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPEFRKGNCKKGD 89
           DHF M++FK+R+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG ACP+FRKG CKKGD
Sbjct: 78  DHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCKKGD 137

Query: 90  SCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLR-IPPLSGDPMTSI-LT 149
           SC+ AHG+FECWLHP RYRTQPCKDG  C R++CFFAHSPDQLR +   S D + S  ++
Sbjct: 138 SCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRSPDRVDSFDVS 197

Query: 150 SPT-----SILSNPLLDSPPISPK-----------LAGGLFH-SMNRLVSSMGSLEIEKL 209
           SP       +  +P+  SPP+SP+           L+  L   S+N +V S  +L+   +
Sbjct: 198 SPIRARAFQLSISPVSGSPPMSPRADSESSPMTQSLSRSLGSCSINDVVPSFRNLQFNSV 257

Query: 210 KLISQ----FGVQLGRNLGSPAGGGFYSFPASPT-TGNYELWGKIYEEEEPVMER-VESG 269
           K   +    FG   G   GS  G GF S P +PT  GN ++W +   EEEPVMER VESG
Sbjct: 258 KSFPRNNPLFG--FGSPRGSILGPGFQSLPTTPTRPGNLDIW-EYGLEEEPVMERVVESG 317

Query: 270 KNLRAKMYEKLSKDNSV-----EPAVDSTLTPDVGWISELLM 282
           + LR KM EKL K+N +     +P  +    PDVGW+S+LLM
Sbjct: 318 RELREKMREKLHKENCMDRVAQDPDQNLGEAPDVGWVSDLLM 356

[Close]

BLAST of Sed0017040 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 5.5e-65
Identity = 127/252 (50.40%), Postives = 164/252 (65.08%), Query Frame = 0


Query: 18  DPLAGIPSSADDDHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEAC 77
           D  + +  S   D F ++EFKIR+CARGRSHDWT+CP+AH GEKARRRDP+K  YSG AC
Sbjct: 77  DESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTAC 136

Query: 78  PEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPPL 137
           PEFRKG+C++GDSC+ +HG+FECWLHP+RYRTQPCKDG +CRRR+CFFAH+ +QLR+ P 
Sbjct: 137 PEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPC 196

Query: 138 SGDP----MTSILTSPTSILSNPLLDSPPISPKLAGGLFHSMNRLVSSMGSLEIEKLKLI 197
           S DP     + + TSPTSIL +P    P  SP L+     S   L++SM  +++      
Sbjct: 197 SLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLS----PSTGELIASMRKMQLN----- 256

Query: 198 SQFGVQLGRNLGSPAGGGF-YSFPASPTTGNYELWGKIYE---EEEPVMERVESGKNLRA 257
                  G +  SP        F +S        W +I E   EE P ME VESGK LRA
Sbjct: 257 -----GGGCSWSSPMRSAVRLPFSSSLRPIQAATWPRIREFEIEEAPAMEFVESGKELRA 314

Query: 258 KMYEKLSKDNSV 262
           +MY +LS++NS+
Sbjct: 317 EMYARLSRENSL 314

[Close]

BLAST of Sed0017040 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.3e-63
Identity = 145/326 (44.48%), Postives = 182/326 (55.83%), Query Frame = 0


Query: 30  DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPEFRKGNCKKGD 89
           D F M+EFK+R+CARGRSHDWT+CP+AH GEKARRRDP++  YSG ACP+FRKG CK+GD
Sbjct: 76  DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCKRGD 135

Query: 90  SCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPPLS----------- 149
           +C+ AHG+FECWLHP RYRTQPCKDG ACRRRVCFFAH+PDQLR+ P S           
Sbjct: 136 ACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSPRGC 195

Query: 150 -----------------GDPM-----TSILT------SPTSIL----SNPLLDSPPISPK 209
                            G P+      S LT      SPTS L     +P  +SPP+SP 
Sbjct: 196 GGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTLVSPPRSPPSESPPLSPD 255

Query: 210 LAGGLFHSMNRLVSSMGS---LEIEKLKLISQFG-------VQLGRNLGSP------AGG 269
            AG L       V S  +   + + +L+L S          +  G   GSP      A  
Sbjct: 256 AAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGYQYGSPKSPAAAAAA 315

Query: 270 GFYSFPASPT-------------TGNYELWGKIYEEEEPVMERVESGKNLRAKMYEKLSK 281
             YS P++PT             T   E       EEE  MERVESG+ LR K++E+LSK
Sbjct: 316 ALYSLPSTPTRLSPVTVTTASGATVTVEPLDLGLIEEEQPMERVESGRALREKVFERLSK 375

[Close]

BLAST of Sed0017040 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 3.0e-63
Identity = 141/312 (45.19%), Postives = 183/312 (58.65%), Query Frame = 0


Query: 30  DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPEFRKGNCKKGD 89
           D F M+EFK+R+CARGRSHDWT+CP+AH GEKARRRDP+K  YSG ACP+FRKG CK+GD
Sbjct: 75  DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGGCKRGD 134

Query: 90  SCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPP------------- 149
           +C+ AHG+FECWLHP RYRTQPCKDG ACRRRVCFFAH+PDQLR+ P             
Sbjct: 135 ACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQSSPRSVASSP 194

Query: 150 ----LSGDPM-----------TSILTSPTSIL----SNPLLDSPPISPKLAG-------- 209
                 G P+           T + +SPTS L     +P  +SPP+SP  A         
Sbjct: 195 LAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPLSPDGAAAIRRGSWP 254

Query: 210 GLFHSMNRLVSSMGSLEIEKLKLISQFGVQLGRN---LGSP-AGGGFYSFPASP------ 269
           G+   +N +++S   L + K+K     G     +    GSP A  G YS P +P      
Sbjct: 255 GVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATGLYSLPTTPLASTAT 314

Query: 270 -TTG-----NYE-LWGKIYEEEEPVMERVESGKNLRAKMYEKLSKDNSVEPAVDSTLTP- 281
            TT      N E L   +  +EEPV +RVESG+ LR K++E+LS+D ++     +  T  
Sbjct: 315 VTTASSFMPNLEPLDLGLIGDEEPV-QRVESGRALREKVFERLSRDGAISGDATAFATAG 374

[Close]

BLAST of Sed0017040 vs. ExPASy TrEMBL
Match: A0A6J1IQE6 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111477245 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.5e-105
Identity = 208/352 (59.09%), Postives = 237/352 (67.33%), Query Frame = 0


Query: 1   MIGEHSRFHQTIQIPQWDP--------------LAG---------------IPSSADD-- 60
           MIGE SRF Q IQ+P WDP              + G               +PS+AD   
Sbjct: 1   MIGEQSRFTQAIQVPPWDPHEDHHSIGISSPVFIHGGLDSFIDSFSAIHRYLPSAADSTA 60

Query: 61  ----------DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPE 120
                     DHF MFEFKIR+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG ACPE
Sbjct: 61  AEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPE 120

Query: 121 FRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPP--- 180
           FRKGNCKKGDSCDLAHGIFECWLHP RYRTQPCKDGLACRRRVCFFAH P+QLR+ P   
Sbjct: 121 FRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQS 180

Query: 181 ---------LSGDPMT-----------SILTSPTSILS----NPLLDSPPIS---PKLAG 240
                    + G P             S++TSPTSI+S    +P  DSPP+S   P+L G
Sbjct: 181 PRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPMSPNCPQLGG 240

Query: 241 GLFHSMNRLVSSMGSLEIEKLKLISQFGVQLGRNLGSPAGGGFYSFPASPTTGNYELWGK 282
           G F+SM +L SS   L+I K K    +G+QLG+NL SP+G GFYS P++PTTG YELWGK
Sbjct: 241 GSFNSMTKLASS--HLKIGKSKATPHWGIQLGQNLRSPSGSGFYSLPSTPTTGKYELWGK 300

[Close]

BLAST of Sed0017040 vs. ExPASy TrEMBL
Match: A0A6J1FFV8 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111443562 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 3.3e-105
Identity = 208/352 (59.09%), Postives = 237/352 (67.33%), Query Frame = 0


Query: 1   MIGEHSRFHQTIQIPQWDP--------------LAG---------------IPSSADD-- 60
           MIGE SRF  TIQ+P WDP              + G               +PS+AD   
Sbjct: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTA 60

Query: 61  ----------DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPE 120
                     DHF MFEFKIR+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG ACPE
Sbjct: 61  AEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPE 120

Query: 121 FRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPP--- 180
           FRKGNCKKGDSCDLAHGIFECWLHP RYRTQPCKDGLACRRRVCFFAH P+QLR+ P   
Sbjct: 121 FRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQS 180

Query: 181 ---------LSGDPMT-----------SILTSPTSILS----NPLLDSPPIS---PKLAG 240
                    + G P             S++TSPTSI+S    +P  DSPP+S   P+L G
Sbjct: 181 PRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQLGG 240

Query: 241 GLFHSMNRLVSSMGSLEIEKLKLISQFGVQLGRNLGSPAGGGFYSFPASPTTGNYELWGK 282
           G F+SM +L SS   L+I K K    +G+QLG+NL SP+G GFYS P++PTTG YELWGK
Sbjct: 241 GSFNSMTKLASS--HLKIGKSKAKPHWGIQLGQNLLSPSGSGFYSLPSTPTTGKYELWGK 300

[Close]

BLAST of Sed0017040 vs. ExPASy TrEMBL
Match: A0A6J1CEX8 (zinc finger CCCH domain-containing protein 23-like OS=Momordica charantia OX=3673 GN=LOC111010840 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 9.9e-102
Identity = 204/351 (58.12%), Postives = 233/351 (66.38%), Query Frame = 0


Query: 1   MIGEHSRFHQTIQIPQWDPL--------------AGIPSSADD----------------- 60
           MI E +RF+ TI++PQWDPL              AG+ S+  D                 
Sbjct: 2   MISERTRFNHTIEVPQWDPLEDHPLTGISSPVFVAGVDSNFIDSFAAIHRFLPSNDYAAV 61

Query: 61  ----------------DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYS 120
                           DHF MFEFKIR+CARGRSHDWT+CPYAH GEKARRRDP+K  YS
Sbjct: 62  DSDEFDVAAAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYS 121

Query: 121 GEACPEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLR 180
           G ACPEFRKGNCKKGDSCDLAHGIFECWLHP RYRTQPCKDGLACRRRVCFFAHSP+QLR
Sbjct: 122 GTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHSPEQLR 181

Query: 181 I---PPLSGDPM----------------TSILTSPTSILSNPLLDSPPIS---PKLAGGL 240
           +    P+S D +                 S +TSPTSILS P  DSPP+S   P++ GG 
Sbjct: 182 VLPRTPVSADSVDGSSRIALAFDSYLAKASFVTSPTSILSTP-PDSPPLSPNCPQIGGGS 241

Query: 241 FHSMNRLVSSMGSLEIEKLKLISQFGVQLGRNLGSPAGG--GFYSFPASPTTGNYELWGK 281
           F+SMN +V+SM  L+I K K   Q+GVQ+ + L SP+GG  GFYS P +PTTG YELWGK
Sbjct: 242 FNSMNGIVASMHKLQIGKSKSSPQWGVQMAQGLCSPSGGGCGFYSSPTTPTTGKYELWGK 301

[Close]

BLAST of Sed0017040 vs. ExPASy TrEMBL
Match: A0A5D3D9C0 (Zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002330 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.9e-100
Identity = 205/355 (57.75%), Postives = 236/355 (66.48%), Query Frame = 0


Query: 1   MIGEHSRFHQTIQIPQWDPL--------------AG---------------IPSSADD-- 60
           MIGE SRF+ TIQ+P WDPL              AG               +PS+AD   
Sbjct: 2   MIGEQSRFNHTIQVPPWDPLEDHHITGVSSPVFVAGGVDSFIDSFSSIHRYLPSAADSDE 61

Query: 61  -------------DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEA 120
                        DHF MFEFKIR+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG A
Sbjct: 62  LDGVGEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA 121

Query: 121 CPEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRI-- 180
           CPEFRKGNCKKGDSCD AHGIFECWLHP RYRTQPCKDGLACRRRVCFFAH+P+QLR+  
Sbjct: 122 CPEFRKGNCKKGDSCDFAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLP 181

Query: 181 -----PPLSGDPMT----------------SILTSPTSILSNPLL----DSPPISPKLAG 240
                 P+S D +                 S +TSPTSILS P +    DSPP+SP    
Sbjct: 182 QQSPRTPVSADSVDGSSRVAHAFDSYFSKGSFVTSPTSILSTPPVSPPSDSPPLSPNCP- 241

Query: 241 GLFHSMNRLVSSMGSLEIEKLKLISQF--GVQLG-RNLGSPAGGGFYSFPASPTTGNYEL 282
             F+SMN LVS M +L++ KLK        +QLG +N  SP+G G Y+ P++PTTGNYEL
Sbjct: 242 --FNSMNGLVSCMRNLQLGKLKATGPHWGRIQLGSQNPLSPSGSGLYNLPSTPTTGNYEL 301

[Close]

BLAST of Sed0017040 vs. ExPASy TrEMBL
Match: A0A1S3BTV6 (zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103493640 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.9e-100
Identity = 205/355 (57.75%), Postives = 236/355 (66.48%), Query Frame = 0


Query: 1   MIGEHSRFHQTIQIPQWDPL--------------AG---------------IPSSADD-- 60
           MIGE SRF+ TIQ+P WDPL              AG               +PS+AD   
Sbjct: 2   MIGEQSRFNHTIQVPPWDPLEDHHITGVSSPVFVAGGVDSFIDSFSSIHRYLPSAADSDE 61

Query: 61  -------------DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEA 120
                        DHF MFEFKIR+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG A
Sbjct: 62  LDGVGEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA 121

Query: 121 CPEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRI-- 180
           CPEFRKGNCKKGDSCD AHGIFECWLHP RYRTQPCKDGLACRRRVCFFAH+P+QLR+  
Sbjct: 122 CPEFRKGNCKKGDSCDFAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLP 181

Query: 181 -----PPLSGDPMT----------------SILTSPTSILSNPLL----DSPPISPKLAG 240
                 P+S D +                 S +TSPTSILS P +    DSPP+SP    
Sbjct: 182 QQSPRTPVSADSVDGSSRVAHAFDSYFSKGSFVTSPTSILSTPPVSPPSDSPPLSPNCP- 241

Query: 241 GLFHSMNRLVSSMGSLEIEKLKLISQF--GVQLG-RNLGSPAGGGFYSFPASPTTGNYEL 282
             F+SMN LVS M +L++ KLK        +QLG +N  SP+G G Y+ P++PTTGNYEL
Sbjct: 242 --FNSMNGLVSCMRNLQLGKLKATGPHWGRIQLGSQNPLSPSGSGLYNLPSTPTTGNYEL 301

[Close]

BLAST of Sed0017040 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 283.9 bits (725), Expect = 1.4e-76
Identity = 158/303 (52.15%), Postives = 199/303 (65.68%), Query Frame = 0


Query: 15  PQWDPLAGIPSSADD----DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKC 74
           P  DP    P S  D    DHF M+EFK+R+CARGRSHDWT+CPYAH GEKARRRDP+K 
Sbjct: 58  PDSDPDLSGPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKF 117

Query: 75  RYSGEACPEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPD 134
            YSG ACPEFRKG CK+GD+C+ +HG+FECWLHP RYRTQPCKDG  CRRRVCFFAHSPD
Sbjct: 118 HYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPD 177

Query: 135 QLRI-PPLSGDPMTSI-LTSPT-----SILSNPLLDSPPISPK---------LAGGLFHS 194
           Q+R+ P  S D + S  + SPT         +P  +SPP+SP+         L+  L  +
Sbjct: 178 QIRVLPNQSPDRVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSN 237

Query: 195 M-NRLVSSMGSLEIEKLK--LISQFGVQL---GRNLGSPAGG----GFYSFPASPT-TGN 254
           + N +V+S+ +L++ K+K  L S +  Q+   G   GSP G     GF S P +PT  G 
Sbjct: 238 LGNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPGF 297

Query: 255 YELWGKIYEEEEPVMERVESGKNLRAKMYEKLSKDN---SVEPAVDSTL--TPDVGWISE 282
             +W     EEEP MERVESG+ LRA+++EKLSK+N    +EP  D     TPDVGW+S+
Sbjct: 298 MNIWENGL-EEEPAMERVESGRELRAQLFEKLSKENCMGRIEPDPDQGAGDTPDVGWVSD 357

[Close]

BLAST of Sed0017040 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 265.4 bits (677), Expect = 5.2e-71
Identity = 147/282 (52.13%), Postives = 185/282 (65.60%), Query Frame = 0


Query: 30  DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPEFRKGNCKKGD 89
           DHF M++FK+R+CARGRSHDWT+CPYAH GEKARRRDP+K  YSG ACP+FRKG CKKGD
Sbjct: 78  DHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCKKGD 137

Query: 90  SCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLR-IPPLSGDPMTSI-LT 149
           SC+ AHG+FECWLHP RYRTQPCKDG  C R++CFFAHSPDQLR +   S D + S  ++
Sbjct: 138 SCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRSPDRVDSFDVS 197

Query: 150 SPT-----SILSNPLLDSPPISPK-----------LAGGLFH-SMNRLVSSMGSLEIEKL 209
           SP       +  +P+  SPP+SP+           L+  L   S+N +V S  +L+   +
Sbjct: 198 SPIRARAFQLSISPVSGSPPMSPRADSESSPMTQSLSRSLGSCSINDVVPSFRNLQFNSV 257

Query: 210 KLISQ----FGVQLGRNLGSPAGGGFYSFPASPT-TGNYELWGKIYEEEEPVMER-VESG 269
           K   +    FG   G   GS  G GF S P +PT  GN ++W +   EEEPVMER VESG
Sbjct: 258 KSFPRNNPLFG--FGSPRGSILGPGFQSLPTTPTRPGNLDIW-EYGLEEEPVMERVVESG 317

Query: 270 KNLRAKMYEKLSKDNSV-----EPAVDSTLTPDVGWISELLM 282
           + LR KM EKL K+N +     +P  +    PDVGW+S+LLM
Sbjct: 318 RELREKMREKLHKENCMDRVAQDPDQNLGEAPDVGWVSDLLM 356

[Close]

BLAST of Sed0017040 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 249.2 bits (635), Expect = 3.9e-66
Identity = 127/252 (50.40%), Postives = 164/252 (65.08%), Query Frame = 0


Query: 18  DPLAGIPSSADDDHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEAC 77
           D  + +  S   D F ++EFKIR+CARGRSHDWT+CP+AH GEKARRRDP+K  YSG AC
Sbjct: 77  DESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTAC 136

Query: 78  PEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPPL 137
           PEFRKG+C++GDSC+ +HG+FECWLHP+RYRTQPCKDG +CRRR+CFFAH+ +QLR+ P 
Sbjct: 137 PEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPC 196

Query: 138 SGDP----MTSILTSPTSILSNPLLDSPPISPKLAGGLFHSMNRLVSSMGSLEIEKLKLI 197
           S DP     + + TSPTSIL +P    P  SP L+     S   L++SM  +++      
Sbjct: 197 SLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLS----PSTGELIASMRKMQLN----- 256

Query: 198 SQFGVQLGRNLGSPAGGGF-YSFPASPTTGNYELWGKIYE---EEEPVMERVESGKNLRA 257
                  G +  SP        F +S        W +I E   EE P ME VESGK LRA
Sbjct: 257 -----GGGCSWSSPMRSAVRLPFSSSLRPIQAATWPRIREFEIEEAPAMEFVESGKELRA 314

Query: 258 KMYEKLSKDNSV 262
           +MY +LS++NS+
Sbjct: 317 EMYARLSRENSL 314

[Close]

BLAST of Sed0017040 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 249.2 bits (635), Expect = 3.9e-66
Identity = 127/252 (50.40%), Postives = 164/252 (65.08%), Query Frame = 0


Query: 18  DPLAGIPSSADDDHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEAC 77
           D  + +  S   D F ++EFKIR+CARGRSHDWT+CP+AH GEKARRRDP+K  YSG AC
Sbjct: 77  DESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTAC 136

Query: 78  PEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPPL 137
           PEFRKG+C++GDSC+ +HG+FECWLHP+RYRTQPCKDG +CRRR+CFFAH+ +QLR+ P 
Sbjct: 137 PEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPC 196

Query: 138 SGDP----MTSILTSPTSILSNPLLDSPPISPKLAGGLFHSMNRLVSSMGSLEIEKLKLI 197
           S DP     + + TSPTSIL +P    P  SP L+     S   L++SM  +++      
Sbjct: 197 SLDPDLGFFSGLATSPTSILVSPSFSPPSESPPLS----PSTGELIASMRKMQLN----- 256

Query: 198 SQFGVQLGRNLGSPAGGGF-YSFPASPTTGNYELWGKIYE---EEEPVMERVESGKNLRA 257
                  G +  SP        F +S        W +I E   EE P ME VESGK LRA
Sbjct: 257 -----GGGCSWSSPMRSAVRLPFSSSLRPIQAATWPRIREFEIEEAPAMEFVESGKELRA 314

Query: 258 KMYEKLSKDNSV 262
           +MY +LS++NS+
Sbjct: 317 EMYARLSRENSL 314

[Close]

BLAST of Sed0017040 vs. TAIR 10
Match: AT1G03790.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.8e-50
Identity = 91/156 (58.33%), Postives = 112/156 (71.79%), Query Frame = 0


Query: 25  SSADD----DHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPEF 84
           S +DD    DHF MFEFKIR+C R RSHDWTDCP+AH GEKARRRDP++ +YSGE CPEF
Sbjct: 72  SDSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEF 131

Query: 85  RK-GNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPPLSG 144
           R+ G+C +GD C+ AHG+FECWLHP RYRT+ CKDG  C+R+VCFFAHSP QLR+ P   
Sbjct: 132 RRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLP--P 191

Query: 145 DPMTSILTSPTSILSNP--LLDSPPISPKLAGGLFH 174
           + ++ +  SP+    NP  L  S   +  L G L H
Sbjct: 192 ENVSGVSASPSPAAKNPCCLFCSSSPTSTLLGNLSH 225

The following BLAST results are available for this feature:

BLAST of Sed0017040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977064.1	3.1e-105	59.09	zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima]	[more]
KAG6591452.1	4.0e-105	59.09	Zinc finger CCCH domain-containing protein 20, partial [Cucurbita argyrosperma s...	[more]
XP_023536445.1	4.0e-105	59.09	zinc finger CCCH domain-containing protein 23-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937190.1	6.8e-105	59.09	zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata]	[more]
XP_038900024.1	2.0e-101	57.91	zinc finger CCCH domain-containing protein 23-like [Benincasa hispida]	[more]

BLAST of Sed0017040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82199	2.0e-75	52.15	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M0G2	7.4e-70	52.13	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82307	5.5e-65	50.40	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6L4N4	2.3e-63	44.48	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]
Q9FU27	3.0e-63	45.19	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]

BLAST of Sed0017040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQE6	1.5e-105	59.09	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FFV8	3.3e-105	59.09	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1CEX8	9.9e-102	58.12	zinc finger CCCH domain-containing protein 23-like OS=Momordica charantia OX=367...	[more]
A0A5D3D9C0	1.9e-100	57.75	Zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BTV6	1.9e-100	57.75	zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Sed0017040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19810.1	1.4e-76	52.15	CCCH-type zinc finger family protein	[more]
AT4G29190.1	5.2e-71	52.13	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	3.9e-66	50.40	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	3.9e-66	50.40	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G03790.1	1.8e-50	58.33	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 106..129 e-value: 7.1 score: 9.5 coord: 71..97 e-value: 6.0E-5 score: 32.4
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 71..98 score: 13.084275
None	No IPR available	GENE3D	4.10.1000.10		coord: 68..135 e-value: 4.6E-8 score: 34.8
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 29..280
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 29..280

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017040.1	Sed0017040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding