Sed0017014 (gene) Chayote v1

Overview


Name	Sed0017014
Type	gene
Organism	Sechium edule (Chayote v1)
Description	serine/arginine-rich splicing factor RS2Z32-like isoform X1
Location	LG04: 39554433 .. 39557279 (+)
RNA-Seq Expression	Sed0017014
Synteny	Sed0017014

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTTGCCAAGGACGCGAAGTTAGGGTTTCGTATTATCACTGTTTCCAGGTATGCCTCCTTTGTTCGATTTTTCTAGGTTTTGTTGCATCGAATCCTCTCACTCCAAATTTGATGGTTTCATTGATTTATGTTGCGCAATAAAGGTTTTTTGCTCTCTAATTCGCCGTAACAATTTTGTTGGACTCTTCGCGTTGAATCATCAGTAGTTGAATTGTATCTATATTCGTCTGTTTCATCGCCTGTGATGTTGGTATTGTGATTTTTAATTGTAGGTAAAATGCCTCGCTATGACGATCGTTACGGTGGTACTCGGCTCTATGTTGGGCGGCTGTCTTCACGGACGAGGTCGCGCGATCTCGATGATCTGTTCGGTCGTTATGGAAGGTATGCGGGCTCTTGAGGGGATGTACTGTTCAACCATTTGTTGGTCGAGTTTGTGTTCTAATTTAATTTGATAAAGTCGAAATATTTAAGCTTTTTAATTGTGTCTTGTTTTTATTCTATTGTCCGGTTACGTTTTTTATAACATCCTTGCAAGTGTTAGTTATTTGTACTCTTTCTCTAGACCAATTGAGGGACCTGCCAAGCGCCTCTTTTGGTGATCGTCAATGCGTATTTTTTATATTAAGTGTGGCATTGTTGTTGGTCAGAGTTTGTGTTCTAATTTAATTTGATAAAGTCGAAATCTTTTAGCTTTTTAATTGTGTCTTGTTTTACTTCTATTGTCCGGTTACGTTTTTTATAACATCCTTGCAAGTGTTTGTTAATTGTACTTCTTCTCTAGACCAATTGAGGTACTTGCCAAACGCCTCTTTGGGTGCTCGTAAATGTGTATTTTTTTATATTAAGTGTGGCATTGTTGATGGGTCTGTGTGTTTTAAAACTTTAACTTGAGTGGTCTTGTTGAAGGTTTTTTGGCTTGTGCCAAACCTGGAGGTCTATGGTGAGAGGGTTCCCTTGGTGAATTTGGCGAGTCTTTCTATTATGTTATTGCCTGTTTTTATGGAAATGCCAAGAATTTCAGAATGGTGTTTAGTTCATCTATGAGGGGGCAAGGTGTCAACCCTTCCATACTTGTATCAAATGATGGCCTTACCTGTTTCTGGAAACCATTTGCGCAGAGTACGCGATGTGGATATGAAGCGAGACTATGCATTTATTGTATGTATTTCTCCTCACTCTTTATGTACTCATTTTATGTTCTTGTCTTGAATGCAAGAGCGTGCTACTGTTCATTTTCTCAGCTTGATATGGTGCATGCTAGTGTCTGTATGTGACAAGTGTGATCTTTCTTCTTGGTTTATGCTTAAAAAACATATAATAACAGGAGTTCAGTGATCCTCGAGATGCCGATGATGCAAGATATAGTTTAAATGGGAGAGATGTCCATGGAAGTCGAATCACTGTGGAAATTGCCAAAGGGGTAAGCAAGCACCATGATCTTTCTTGAAATTTTCTCTAATGTGTAGTTTGTTTCAGGAATTTGTCTATATGTTTTCAGGATCCTGTCTTTGTAACTGGTTTACTATTTCTCCTTAGTGGGTATTTTGATCTTTTGTGTTCATTTGGAGTATATACTTTTGGAAAATGTCGTTTAATGTGGTCATTCCAGTTTTCGTTTAGTACCATTTGACATTCTAAAGGATGCGTATTTTTGTGGCTTGCACAGGGAAAAATTTATCTTAGTATGTACTGTTGTAAATTGGTTTCATTAACCATTCTCTAAATGTGATATAGTTTTTAATTATGAATTAGGTACCCCGTGGTCCTGGTGGACATCGTGATCGTGAACAATTGGGTCGAGGCCCTCCTGGAACTGGCCGTTGTTTTAACTGTGGGCTTGATGGCCACTGGGCTAGAGATTGCAAGGCTGGAGATTGGAAAAATAAGTGTTATCGTTGTGGGGAGCGAGGTCACATAGAGAAGAATTGCCAGAACAGTCCTAAGAAATTGAAGTATGTTATCGTTTCAATTGCTCCTTTTATGCCACTTGTAATGTTTTTGGGTTGATCAATGAGAAATAACTGTATGGCACAGGCGTGGAAGTTACTCTCGTTCACCAAGCCCTCGCCGTGGTAGAAGTAGAAGTCGTAGTTACAGCAGAGGTCGTAGCTACAGGTTCATATCAGTTTAGCCAATTTAGTTTATACATTGATTCAAGTTTCCATCTGGTTCACATTGCGGAAGTGATGTTATGAGTTTGTTGATTATTTATTGAACTTTGATCTATTATGAATTCAATTTTCTTAGCATTTGTGTTCTGTATCGACAGTCGATCTAGATCACCCGTAAAAAGGGAGAGGAGTGTAGAACGATCAGACAGAAGATCAAGGAGCCCAAGAGACAGGAGTCCAAAGAGACACAGTGAGTCACCTCCTCCTTCAAAAGCTATGAAACGTAGCCCGACTCCTGATGACAGGAGTCCAGTTGAAGCAAGACGTAGTCCGTCTCCTGAAAACCGTAACAGTCCCAGAGGAAGTAGCAGAAGTCCAAGAGGAAGGAGCAGAAGTCCAATGGACGAAGCTGAGGACTTAAATGGTAGTCGGGGGGAAGAAAACGGCTACAGTCGCAGCCCTAGTCCATTGGCCAGAGAAGAAAAGAGTCAGAGCCCTGTAAACGATGAAGACAACGGTTCTCCAAGAGGCGGCAGCGAGTCTGCATAATAGCCCATTGTGTTGAAATTTTATAAGCAATTTGTGCCTCACAGAGACTCCTAAAATAGAACTGTATTTTGATCGAATCCCTCGCCTTCAATGTTCATCAGCACCTTATTTTTTCCTATTAATCTTCCGTCTCAATTATGAATTTTTAATATAATAATCCGCATCTTATCCAGCTTTATCAA

mRNA sequence

GATTTTGCCAAGGACGCGAAGTTAGGGTTTCGTATTATCACTGTTTCCAGGTAAAATGCCTCGCTATGACGATCGTTACGGTGGTACTCGGCTCTATGTTGGGCGGCTGTCTTCACGGACGAGGTCGCGCGATCTCGATGATCTGTTCGGTCGTTATGGAAGAGTACGCGATGTGGATATGAAGCGAGACTATGCATTTATTGAGTTCAGTGATCCTCGAGATGCCGATGATGCAAGATATAGTTTAAATGGGAGAGATGTCCATGGAAGTCGAATCACTGTGGAAATTGCCAAAGGGGTACCCCGTGGTCCTGGTGGACATCGTGATCGTGAACAATTGGGTCGAGGCCCTCCTGGAACTGGCCGTTGTTTTAACTGTGGGCTTGATGGCCACTGGGCTAGAGATTGCAAGGCTGGAGATTGGAAAAATAAGTGTTATCGTTGTGGGGAGCGAGGTCACATAGAGAAGAATTGCCAGAACAGTCCTAAGAAATTGAAGCGTGGAAGTTACTCTCGTTCACCAAGCCCTCGCCGTGGTAGAAGTAGAAGTCGTAGTTACAGCAGAGGTCGTAGCTACAGTCGATCTAGATCACCCGTAAAAAGGGAGAGGAGTGTAGAACGATCAGACAGAAGATCAAGGAGCCCAAGAGACAGGAGTCCAAAGAGACACAGTGAGTCACCTCCTCCTTCAAAAGCTATGAAACGTAGCCCGACTCCTGATGACAGGAGTCCAGTTGAAGCAAGACGTAGTCCGTCTCCTGAAAACCGTAACAGTCCCAGAGGAAGTAGCAGAAGTCCAAGAGGAAGGAGCAGAAGTCCAATGGACGAAGCTGAGGACTTAAATGGTAGTCGGGGGGAAGAAAACGGCTACAGTCGCAGCCCTAGTCCATTGGCCAGAGAAGAAAAGAGTCAGAGCCCTGTAAACGATGAAGACAACGGTTCTCCAAGAGGCGGCAGCGAGTCTGCATAATAGCCCATTGTGTTGAAATTTTATAAGCAATTTGTGCCTCACAGAGACTCCTAAAATAGAACTGTATTTTGATCGAATCCCTCGCCTTCAATGTTCATCAGCACCTTATTTTTTCCTATTAATCTTCCGTCTCAATTATGAATTTTTAATATAATAATCCGCATCTTATCCAGCTTTATCAA

Coding sequence (CDS)

ATGCCTCGCTATGACGATCGTTACGGTGGTACTCGGCTCTATGTTGGGCGGCTGTCTTCACGGACGAGGTCGCGCGATCTCGATGATCTGTTCGGTCGTTATGGAAGAGTACGCGATGTGGATATGAAGCGAGACTATGCATTTATTGAGTTCAGTGATCCTCGAGATGCCGATGATGCAAGATATAGTTTAAATGGGAGAGATGTCCATGGAAGTCGAATCACTGTGGAAATTGCCAAAGGGGTACCCCGTGGTCCTGGTGGACATCGTGATCGTGAACAATTGGGTCGAGGCCCTCCTGGAACTGGCCGTTGTTTTAACTGTGGGCTTGATGGCCACTGGGCTAGAGATTGCAAGGCTGGAGATTGGAAAAATAAGTGTTATCGTTGTGGGGAGCGAGGTCACATAGAGAAGAATTGCCAGAACAGTCCTAAGAAATTGAAGCGTGGAAGTTACTCTCGTTCACCAAGCCCTCGCCGTGGTAGAAGTAGAAGTCGTAGTTACAGCAGAGGTCGTAGCTACAGTCGATCTAGATCACCCGTAAAAAGGGAGAGGAGTGTAGAACGATCAGACAGAAGATCAAGGAGCCCAAGAGACAGGAGTCCAAAGAGACACAGTGAGTCACCTCCTCCTTCAAAAGCTATGAAACGTAGCCCGACTCCTGATGACAGGAGTCCAGTTGAAGCAAGACGTAGTCCGTCTCCTGAAAACCGTAACAGTCCCAGAGGAAGTAGCAGAAGTCCAAGAGGAAGGAGCAGAAGTCCAATGGACGAAGCTGAGGACTTAAATGGTAGTCGGGGGGAAGAAAACGGCTACAGTCGCAGCCCTAGTCCATTGGCCAGAGAAGAAAAGAGTCAGAGCCCTGTAAACGATGAAGACAACGGTTCTCCAAGAGGCGGCAGCGAGTCTGCATAA

Protein sequence

MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDARYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPGTGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSPVKRERSVERSDRRSRSPRDRSPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPSPENRNSPRGSSRSPRGRSRSPMDEAEDLNGSRGEENGYSRSPSPLAREEKSQSPVNDEDNGSPRGGSESA

Homology

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BLAST of Sed0017014 vs. NCBI nr
Match: XP_038892927.1 (serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Benincasa hispida] >XP_038892928.1 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Benincasa hispida])

HSP 1 Score: 502.7 bits (1293), Expect = 2.3e-138
Identity = 275/311 (88.42%), Postives = 283/311 (91.00%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPGTGRCFNCGLDGHWARDCKA 120
           RYSLNGRDVHGSRI VEIAKGVPRGPGG   RE LGRGPPGTGRCFNCG+DGHWARDCKA
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGG--SREYLGRGPPGTGRCFNCGIDGHWARDCKA 120

Query: 121 GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP 180
           GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP
Sbjct: 121 GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP 180

Query: 181 VKRERSVERSDRRSRSPRDR-SPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPSPENRN 240
           VKRERS+ERSD+RSRSPR R SPKRHS SPPP K MKRSPTPD+RSP EARRS SP NR+
Sbjct: 181 VKRERSLERSDKRSRSPRGRSSPKRHSLSPPP-KTMKRSPTPDERSPEEARRSLSPGNRD 240

Query: 241 SPRGSSRSPRGRSRSPMDEAEDLNGS-----RGEENGYSRSPSPLAREEKSQSPVNDED- 300
           SPRG SRSPRGRSRSPMDE ED +G      R EENGYSRSPSPL REE+  SPVNDED 
Sbjct: 241 SPRGRSRSPRGRSRSPMDEGEDFSGGGSRNYRREENGYSRSPSPLPREER--SPVNDEDQ 300

Query: 301 NGSPRGGSESA 305
           NGSPRGGSESA
Sbjct: 301 NGSPRGGSESA 306

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BLAST of Sed0017014 vs. NCBI nr
Match: XP_022942535.1 (serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucurbita moschata] >XP_022942536.1 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 502.3 bits (1292), Expect = 3.0e-138
Identity = 278/328 (84.76%), Postives = 287/328 (87.50%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRD-REQLGRGPPGTGRCFNCGLDGHWARDCK 120
           RYSLNGRDVHGSRI VEIAKGVPRGPGG R+ RE LGRGPPGTGRCFNCG+DGHWARDCK
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGSRESREYLGRGPPGTGRCFNCGIDGHWARDCK 120

Query: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180
           AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS
Sbjct: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180

Query: 181 PVKRERSVERSDRRSRSPRD--RSPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPSPEN 240
           PVKR+RS+ERS++RSRSPR    SPKRHS SPPPSKAMKRSPTPD RSP EARRSPSP N
Sbjct: 181 PVKRDRSLERSEKRSRSPRGGRLSPKRHSLSPPPSKAMKRSPTPDVRSPEEARRSPSPGN 240

Query: 241 RNSPRG---------------SSRSPRGRSRSPMDEAEDLNGS-----RGEENGYSRSPS 300
           R+SPRG                SRSPRGRSRSPMDEAED NG      R EENGYSRSPS
Sbjct: 241 RDSPRGRSRSRSRSPRGRSRSRSRSPRGRSRSPMDEAEDFNGGGSRNYRKEENGYSRSPS 300

Query: 301 PLAREEKSQSPVNDED-NGSPRGGSESA 305
           PL REE+  SPVNDED NGSPRGGSESA
Sbjct: 301 PLPREER--SPVNDEDANGSPRGGSESA 326

[Close]

BLAST of Sed0017014 vs. NCBI nr
Match: XP_022993126.1 (serine/arginine-rich splicing factor RS2Z32-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 499.2 bits (1284), Expect = 2.5e-137
Identity = 275/319 (86.21%), Postives = 286/319 (89.66%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRD-REQLGRGPPGTGRCFNCGLDGHWARDCK 120
           RYSLNGRDVHGSRI VEIAKGVPRGPGG R+ RE LGRGPPGTGRCFNCG+DGHWARDCK
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGSRESREYLGRGPPGTGRCFNCGIDGHWARDCK 120

Query: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180
           AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS
Sbjct: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180

Query: 181 PVKRERSVERSDRRSRSPRD--RSPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPSPEN 240
           PVKR+RS+ERS++RSRSPR    SPKRHS SPPPSKAMKRSPTPD RSP EARRS SPEN
Sbjct: 181 PVKRDRSLERSEKRSRSPRGGRLSPKRHSLSPPPSKAMKRSPTPDVRSPEEARRSLSPEN 240

Query: 241 RNSPRG------SSRSPRGRSRSPMDEAEDLNGS-----RGEENGYSRSPSPLAREEKSQ 300
           R+SPRG       SRSPRGRSRSPMDEAED NG      R EENGYSRSPSPL REE+  
Sbjct: 241 RDSPRGRSRRRSRSRSPRGRSRSPMDEAEDFNGGGSRNYRKEENGYSRSPSPLPREER-- 300

Query: 301 SPVNDED-NGSPRGGSESA 305
           SPVND++ NGSPRGGS SA
Sbjct: 301 SPVNDDEANGSPRGGSGSA 317

[Close]

BLAST of Sed0017014 vs. NCBI nr
Match: XP_023541883.1 (serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023541892.1 serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 496.1 bits (1276), Expect = 2.1e-136
Identity = 277/341 (81.23%), Postives = 287/341 (84.16%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRD-REQLGRGPPGTGRCFNCGLDGHWARDCK 120
           RYSLNGRDVHGSRI VEIAKGVPRGPGG R+ RE LGRGPPGTGRCFNCG+DGHWARDCK
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGSRESREYLGRGPPGTGRCFNCGIDGHWARDCK 120

Query: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180
           AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS
Sbjct: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180

Query: 181 PVKRERSVERSDRRSRSPRD--RSPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPSPEN 240
           PVKR+RS+ERS++RSRSPR    SPKRHS SPPPSKA+KRSPTPD RSP EARRSPSP N
Sbjct: 181 PVKRDRSLERSEKRSRSPRGGRLSPKRHSLSPPPSKALKRSPTPDVRSPEEARRSPSPGN 240

Query: 241 RNSPRG----------------------------SSRSPRGRSRSPMDEAEDLNGS---- 300
           R+SPRG                             SRSPRGRSRSPMDEAED NG     
Sbjct: 241 RDSPRGRSRSRSRSRSRSRSPRGRSRSRSPRGRSRSRSPRGRSRSPMDEAEDFNGGGSRN 300

Query: 301 -RGEENGYSRSPSPLAREEKSQSPVNDED-NGSPRGGSESA 305
            R EENGYSRSPSPL REE+  SPVNDED NGSPRGGSESA
Sbjct: 301 YRKEENGYSRSPSPLPREER--SPVNDEDANGSPRGGSESA 339

[Close]

BLAST of Sed0017014 vs. NCBI nr
Match: XP_008445806.1 (PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X2 [Cucumis melo] >XP_008445807.1 PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X2 [Cucumis melo])

HSP 1 Score: 495.4 bits (1274), Expect = 3.6e-136
Identity = 276/314 (87.90%), Postives = 284/314 (90.45%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPGTGRCFNCGLDGHWARDCKA 120
           RYSLNGRDVHGSRI VEIAKGVPRGPGG   RE LGRGPPGTGRCFNCG+DGHWARDCKA
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGG--SREYLGRGPPGTGRCFNCGIDGHWARDCKA 120

Query: 121 GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP 180
           GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP
Sbjct: 121 GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP 180

Query: 181 VKRERSVERSDRRSRSPRDR-SPKRHSESPPPSKAMKRSPTPDDRSPVE-ARRSPSPENR 240
           VKR+RS+ERSD+RSRSPR R SPKRHS SPPP KAMKRSPTPD+RSP E ARRS SP NR
Sbjct: 181 VKRDRSLERSDKRSRSPRGRSSPKRHSLSPPP-KAMKRSPTPDERSPEEDARRSLSPGNR 240

Query: 241 N--SPRGSSRSPRGRSRSPMDEAEDLNGS-----RGEENGYSRSPSPLAREEKSQSPVND 300
           +  SPRG SRSPRGRSRSPMDE ED NG      R EENGYSRSPSPL REE+  SPVND
Sbjct: 241 DSRSPRGRSRSPRGRSRSPMDEGEDFNGGGSRNYRREENGYSRSPSPLPREER--SPVND 300

Query: 301 ED-NGSPRGGSESA 305
           ED NGSPRGGSESA
Sbjct: 301 EDNNGSPRGGSESA 309

[Close]

BLAST of Sed0017014 vs. ExPASy Swiss-Prot
Match: Q8VYA5 (Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana OX=3702 GN=RS2Z33 PE=1 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 5.2e-77
Identity = 185/316 (58.54%), Postives = 213/316 (67.41%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGRVRDVDMKRDYAF+EF DPRDADDA
Sbjct: 1   MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPGTGRCFNCGLDGHWARDCKA 120
           R+ L+GRD  GSRITVE ++G PR   G RD +  G  PPG GRCFNCG+DGHWARDC A
Sbjct: 61  RHYLDGRDFDGSRITVEFSRGAPR---GSRDFDSRG-PPPGAGRCFNCGVDGHWARDCTA 120

Query: 121 GDWKNKCYRCGERGHIEKNCQNSPKKLKR-GSYSRSP----SPRRGRSRSRSYSRGRSYS 180
           GDWKNKCYRCGERGHIE+NC+NSPKKL+R GSYSRSP    SPRR RS SRS SR RSYS
Sbjct: 121 GDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSYS 180

Query: 181 RSRSPV-KRERSVERSDRRSRSPRDRSPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPS 240
           RSRSPV +RERSVE         R RSPKR  +S  P +A  RSP  DD           
Sbjct: 181 RSRSPVRRRERSVEE--------RSRSPKRMDDSLSP-RARDRSPVLDD----------- 240

Query: 241 PENRNSPRGSSRSPRGRSRSPMDEAEDLNGSRGEENGYSRSPSPLA-----REEKSQSPV 300
                SP+    SP    +   +   D +G   ++NG +   SP+        ++ +SPV
Sbjct: 241 ---EGSPKIIDGSPPPSPKLQKEVGSDRDGGSPQDNGRNSVVSPVVGAGGDSSKEDRSPV 289

Query: 301 ND--EDNGSPRGGSES 304
           +D  E N +   GSES
Sbjct: 301 DDDYEPNRTSPRGSES 289

[Close]

BLAST of Sed0017014 vs. ExPASy Swiss-Prot
Match: Q9FYB7 (Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana OX=3702 GN=RS2Z32 PE=1 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.7e-75
Identity = 184/295 (62.37%), Postives = 207/295 (70.17%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRG-PPGTGRCFNCGLDGHWARDCK 120
           RY L+GRD  GSRITVE ++G PRG      R+   RG PPG+GRCFNCG+DGHWARDC 
Sbjct: 61  RYYLDGRDFDGSRITVEASRGAPRG-----SRDNGSRGPPPGSGRCFNCGVDGHWARDCT 120

Query: 121 AGDWKNKCYRCGERGHIEKNCQNSP---KKLKRGSYSRSP----SPRRGR--SRSRSYSR 180
           AGDWKNKCYRCGERGHIE+NC+NSP   K  + GSYSRSP    SPRR R  SRSRSYSR
Sbjct: 121 AGDWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPVKSRSPRRRRSPSRSRSYSR 180

Query: 181 GRSYSRSRSPVKRERSVERSDRRSRSP----RDRSPKRHSES-PPPSKAMKRSPTPDDRS 240
           GRSYSRSRSPV+RE+SVE    RSRSP    R  SPK   +S  P  K +  SP      
Sbjct: 181 GRSYSRSRSPVRREKSVE---DRSRSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDY 240

Query: 241 PVEARRSPSPENRNSP-RGSSRSP---RGRSRSPMDEAEDLNGSRGEENGYSRSP 277
               + + +  N  SP  G   SP    G+ RSP+D+  +L  SR    G S SP
Sbjct: 241 DGSPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDDEAEL--SRPSPKG-SESP 284

[Close]

BLAST of Sed0017014 vs. ExPASy Swiss-Prot
Match: Q3T106 (Serine/arginine-rich splicing factor 7 OS=Bos taurus OX=9913 GN=SRSF7 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.0e-21
Identity = 98/244 (40.16%), Postives = 128/244 (52.46%), Query Frame = 0


Query: 1   MPRYDDRYGG-TRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRD---YAFIEFSDPRD 60
           M RY  RYGG T++YVG L +     +L+  F  YG +R V + R+   +AF+EF DPRD
Sbjct: 1   MSRY-GRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 60

Query: 61  ADDARYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPGTGRCFNCGLDGHWAR 120
           A+DA   L+G+ + GSR+ VE++ G+PR      DR    R      RC+ CG  GH+A 
Sbjct: 61  AEDAVRGLDGKVICGSRVRVELSTGMPR--RSRFDRPPARRPFDPNDRCYECGEKGHYAY 120

Query: 121 DCKAGDWKNKCYRCGERGHIEKNCQ--NSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSY 180
           DC     + +  R   R H     +  +  +   RG  SRS SPRR RS S   SR  S 
Sbjct: 121 DCHRYSRRRRS-RSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASL 180

Query: 181 SRSRS-PVKRERSVERSDRRSRS-PRDRSPKRHSESPPPSKAMKRSPTPDDRSPVEARRS 237
            RSRS  +K  RS  RS  RSRS  R RS +  S SP P ++   S +P        RRS
Sbjct: 181 RRSRSGSIKGSRSRSRSRSRSRSLSRPRSSRSKSRSPSPKRSRSPSGSP--------RRS 232

[Close]

BLAST of Sed0017014 vs. ExPASy Swiss-Prot
Match: Q16629 (Serine/arginine-rich splicing factor 7 OS=Homo sapiens OX=9606 GN=SRSF7 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-20
Identity = 110/268 (41.04%), Postives = 144/268 (53.73%), Query Frame = 0


Query: 1   MPRYDDRYGG-TRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRD---YAFIEFSDPRD 60
           M RY  RYGG T++YVG L +     +L+  F  YG +R V + R+   +AF+EF DPRD
Sbjct: 1   MSRY-GRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRD 60

Query: 61  ADDARYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPGTGRCFNCGLDGHWAR 120
           A+DA   L+G+ + GSR+ VE++ G+PR       R +  R P               AR
Sbjct: 61  AEDAVRGLDGKVICGSRVRVELSTGMPR-------RSRFDRPP---------------AR 120

Query: 121 DCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGR--SRSRSYSRGRSY 180
             +  D  ++CY CGE+GH   +C    ++ +  S SRS S  RGR  SRSRS SRGR  
Sbjct: 121 --RPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRR- 180

Query: 181 SRSRSPVKRERSVERSDRRSRSP---RDRS----PKRHSESPPPSKAMKRSPTPDDRSPV 240
           SRS SP +R RS+  S RRSRS    R RS      R+ +SP  S++  RS     RS  
Sbjct: 181 SRSASP-RRSRSI--SLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRS-ISRPRSSR 234

Query: 241 EARRSPSPENRNSPRGSSRSPRGRSRSP 256
              RSPSP+   SP GS R    RS SP
Sbjct: 241 SKSRSPSPKRSRSPSGSPR----RSASP 234

[Close]

BLAST of Sed0017014 vs. ExPASy Swiss-Prot
Match: Q23121 (Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans OX=6239 GN=rsp-1 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.4e-18
Identity = 106/323 (32.82%), Postives = 144/323 (44.58%), Query Frame = 0


Query: 12  RLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDARYSLNGRDVHG 71
           R+Y+GRL+SR   +D++  F  YG++RDV +K  + F+EF D RDA+DA + LNG+++ G
Sbjct: 4   RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63

Query: 72  SRITVEIAKGVPRGPGGH------------------------RDR-EQLGRGPPGT---- 131
            R+ ++ +K  PRG GG                         RDR ++  RGPP      
Sbjct: 64  ERVILDYSK--PRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRESRY 123

Query: 132 GRCFNC-------------------------GLDGHWARDCKAGDWKNKCY-------RC 191
           GR ++                          G++  +A   K  +    C+       RC
Sbjct: 124 GRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEALLCFATPSDLKRC 183

Query: 192 ----------GERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP 251
                     G +  +  + Q    + +  S SRS S  R R RSRS S  RS SRSRSP
Sbjct: 184 IEKCDGMDLNGRKIKMIDDSQAGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSP 243

Query: 252 VKRERSVERSDRRSRSPRDRSPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPSPENRNS 264
            KR R   +S  RSRS    +  R S SP       RSP   DRSP   R S SP  + S
Sbjct: 244 PKRSRRESKSKSRSRSRSRSADNRKSRSP------SRSPKKVDRSPSPPRGSRSPSEKGS 303

[Close]

BLAST of Sed0017014 vs. ExPASy TrEMBL
Match: A0A6J1FWH1 (serine/arginine-rich splicing factor RS2Z32-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447542 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.4e-138
Identity = 278/328 (84.76%), Postives = 287/328 (87.50%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRD-REQLGRGPPGTGRCFNCGLDGHWARDCK 120
           RYSLNGRDVHGSRI VEIAKGVPRGPGG R+ RE LGRGPPGTGRCFNCG+DGHWARDCK
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGSRESREYLGRGPPGTGRCFNCGIDGHWARDCK 120

Query: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180
           AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS
Sbjct: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180

Query: 181 PVKRERSVERSDRRSRSPRD--RSPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPSPEN 240
           PVKR+RS+ERS++RSRSPR    SPKRHS SPPPSKAMKRSPTPD RSP EARRSPSP N
Sbjct: 181 PVKRDRSLERSEKRSRSPRGGRLSPKRHSLSPPPSKAMKRSPTPDVRSPEEARRSPSPGN 240

Query: 241 RNSPRG---------------SSRSPRGRSRSPMDEAEDLNGS-----RGEENGYSRSPS 300
           R+SPRG                SRSPRGRSRSPMDEAED NG      R EENGYSRSPS
Sbjct: 241 RDSPRGRSRSRSRSPRGRSRSRSRSPRGRSRSPMDEAEDFNGGGSRNYRKEENGYSRSPS 300

Query: 301 PLAREEKSQSPVNDED-NGSPRGGSESA 305
           PL REE+  SPVNDED NGSPRGGSESA
Sbjct: 301 PLPREER--SPVNDEDANGSPRGGSESA 326

[Close]

BLAST of Sed0017014 vs. ExPASy TrEMBL
Match: A0A6J1JVG4 (serine/arginine-rich splicing factor RS2Z32-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111489058 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.2e-137
Identity = 275/319 (86.21%), Postives = 286/319 (89.66%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRD-REQLGRGPPGTGRCFNCGLDGHWARDCK 120
           RYSLNGRDVHGSRI VEIAKGVPRGPGG R+ RE LGRGPPGTGRCFNCG+DGHWARDCK
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGSRESREYLGRGPPGTGRCFNCGIDGHWARDCK 120

Query: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180
           AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS
Sbjct: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180

Query: 181 PVKRERSVERSDRRSRSPRD--RSPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPSPEN 240
           PVKR+RS+ERS++RSRSPR    SPKRHS SPPPSKAMKRSPTPD RSP EARRS SPEN
Sbjct: 181 PVKRDRSLERSEKRSRSPRGGRLSPKRHSLSPPPSKAMKRSPTPDVRSPEEARRSLSPEN 240

Query: 241 RNSPRG------SSRSPRGRSRSPMDEAEDLNGS-----RGEENGYSRSPSPLAREEKSQ 300
           R+SPRG       SRSPRGRSRSPMDEAED NG      R EENGYSRSPSPL REE+  
Sbjct: 241 RDSPRGRSRRRSRSRSPRGRSRSPMDEAEDFNGGGSRNYRKEENGYSRSPSPLPREER-- 300

Query: 301 SPVNDED-NGSPRGGSESA 305
           SPVND++ NGSPRGGS SA
Sbjct: 301 SPVNDDEANGSPRGGSGSA 317

[Close]

BLAST of Sed0017014 vs. ExPASy TrEMBL
Match: A0A1S3BDJ7 (serine/arginine-rich splicing factor RS2Z32-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488725 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.8e-136
Identity = 276/314 (87.90%), Postives = 284/314 (90.45%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPGTGRCFNCGLDGHWARDCKA 120
           RYSLNGRDVHGSRI VEIAKGVPRGPGG   RE LGRGPPGTGRCFNCG+DGHWARDCKA
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGG--SREYLGRGPPGTGRCFNCGIDGHWARDCKA 120

Query: 121 GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP 180
           GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP
Sbjct: 121 GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP 180

Query: 181 VKRERSVERSDRRSRSPRDR-SPKRHSESPPPSKAMKRSPTPDDRSPVE-ARRSPSPENR 240
           VKR+RS+ERSD+RSRSPR R SPKRHS SPPP KAMKRSPTPD+RSP E ARRS SP NR
Sbjct: 181 VKRDRSLERSDKRSRSPRGRSSPKRHSLSPPP-KAMKRSPTPDERSPEEDARRSLSPGNR 240

Query: 241 N--SPRGSSRSPRGRSRSPMDEAEDLNGS-----RGEENGYSRSPSPLAREEKSQSPVND 300
           +  SPRG SRSPRGRSRSPMDE ED NG      R EENGYSRSPSPL REE+  SPVND
Sbjct: 241 DSRSPRGRSRSPRGRSRSPMDEGEDFNGGGSRNYRREENGYSRSPSPLPREER--SPVND 300

Query: 301 ED-NGSPRGGSESA 305
           ED NGSPRGGSESA
Sbjct: 301 EDNNGSPRGGSESA 309

[Close]

BLAST of Sed0017014 vs. ExPASy TrEMBL
Match: A0A0A0KS31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177110 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 5.1e-136
Identity = 275/313 (87.86%), Postives = 283/313 (90.42%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 63  MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 122

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPGTGRCFNCGLDGHWARDCKA 120
           RYSLNGRDVHGSRI VEIAKGVPRGPGG   RE LGRGPPGTGRCFNCG+DGHWARDCKA
Sbjct: 123 RYSLNGRDVHGSRIIVEIAKGVPRGPGG--SREYLGRGPPGTGRCFNCGIDGHWARDCKA 182

Query: 121 GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP 180
           GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP
Sbjct: 183 GDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRSP 242

Query: 181 VKRERSVERSDRRSRSPRDR-SPKRHSESPPPSKAMKRSPTPDDRSPVE-ARRSPSPENR 240
           VKR+RS+ERSD+RSRSPR R SPKRHS SPPP KAMKRSPTPD+RSP E ARRS SP NR
Sbjct: 243 VKRDRSLERSDKRSRSPRGRSSPKRHSLSPPP-KAMKRSPTPDERSPEEDARRSLSPGNR 302

Query: 241 N--SPRGSSRSPRGRSRSPMDEAEDLNGS-----RGEENGYSRSPSPLAREEKSQSPVND 300
           +  SPRG SRSPRGRSRSPMDE ED NG      R EENGYSRSPSPL REE+  SPVND
Sbjct: 303 DSRSPRGRSRSPRGRSRSPMDEGEDFNGGGSRNYRREENGYSRSPSPLPREER--SPVND 362

Query: 301 ED-NGSPRGGSES 304
           ED NGSPRGGSES
Sbjct: 363 EDNNGSPRGGSES 370

[Close]

BLAST of Sed0017014 vs. ExPASy TrEMBL
Match: A0A6J1JXF9 (serine/arginine-rich splicing factor RS2Z32-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489058 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.5e-135
Identity = 275/337 (81.60%), Postives = 286/337 (84.87%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRD-REQLGRGPPGTGRCFNCGLDGHWARDCK 120
           RYSLNGRDVHGSRI VEIAKGVPRGPGG R+ RE LGRGPPGTGRCFNCG+DGHWARDCK
Sbjct: 61  RYSLNGRDVHGSRIIVEIAKGVPRGPGGSRESREYLGRGPPGTGRCFNCGIDGHWARDCK 120

Query: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180
           AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS
Sbjct: 121 AGDWKNKCYRCGERGHIEKNCQNSPKKLKRGSYSRSPSPRRGRSRSRSYSRGRSYSRSRS 180

Query: 181 PVKRERSVERSDRRSRSPRD--RSPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPSPEN 240
           PVKR+RS+ERS++RSRSPR    SPKRHS SPPPSKAMKRSPTPD RSP EARRS SPEN
Sbjct: 181 PVKRDRSLERSEKRSRSPRGGRLSPKRHSLSPPPSKAMKRSPTPDVRSPEEARRSLSPEN 240

Query: 241 RNSPRG------------------------SSRSPRGRSRSPMDEAEDLNGS-----RGE 300
           R+SPRG                         SRSPRGRSRSPMDEAED NG      R E
Sbjct: 241 RDSPRGRSRSRSRSRSPRGRSRSRSPRGRSRSRSPRGRSRSPMDEAEDFNGGGSRNYRKE 300

Query: 301 ENGYSRSPSPLAREEKSQSPVNDED-NGSPRGGSESA 305
           ENGYSRSPSPL REE+  SPVND++ NGSPRGGS SA
Sbjct: 301 ENGYSRSPSPLPREER--SPVNDDEANGSPRGGSGSA 335

[Close]

BLAST of Sed0017014 vs. TAIR 10
Match: AT2G37340.1 (arginine/serine-rich zinc knuckle-containing protein 33 )

HSP 1 Score: 289.3 bits (739), Expect = 3.7e-78
Identity = 185/316 (58.54%), Postives = 213/316 (67.41%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGRVRDVDMKRDYAF+EF DPRDADDA
Sbjct: 1   MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPGTGRCFNCGLDGHWARDCKA 120
           R+ L+GRD  GSRITVE ++G PR   G RD +  G  PPG GRCFNCG+DGHWARDC A
Sbjct: 61  RHYLDGRDFDGSRITVEFSRGAPR---GSRDFDSRG-PPPGAGRCFNCGVDGHWARDCTA 120

Query: 121 GDWKNKCYRCGERGHIEKNCQNSPKKLKR-GSYSRSP----SPRRGRSRSRSYSRGRSYS 180
           GDWKNKCYRCGERGHIE+NC+NSPKKL+R GSYSRSP    SPRR RS SRS SR RSYS
Sbjct: 121 GDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSYS 180

Query: 181 RSRSPV-KRERSVERSDRRSRSPRDRSPKRHSESPPPSKAMKRSPTPDDRSPVEARRSPS 240
           RSRSPV +RERSVE         R RSPKR  +S  P +A  RSP  DD           
Sbjct: 181 RSRSPVRRRERSVEE--------RSRSPKRMDDSLSP-RARDRSPVLDD----------- 240

Query: 241 PENRNSPRGSSRSPRGRSRSPMDEAEDLNGSRGEENGYSRSPSPLA-----REEKSQSPV 300
                SP+    SP    +   +   D +G   ++NG +   SP+        ++ +SPV
Sbjct: 241 ---EGSPKIIDGSPPPSPKLQKEVGSDRDGGSPQDNGRNSVVSPVVGAGGDSSKEDRSPV 289

Query: 301 ND--EDNGSPRGGSES 304
           +D  E N +   GSES
Sbjct: 301 DDDYEPNRTSPRGSES 289

[Close]

BLAST of Sed0017014 vs. TAIR 10
Match: AT3G53500.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-76
Identity = 184/295 (62.37%), Postives = 207/295 (70.17%), Query Frame = 0


Query: 1   MPRYDDRYGGTRLYVGRLSSRTRSRDLDDLFGRYGRVRDVDMKRDYAFIEFSDPRDADDA 60
           MPRYDDRYG TRLYVGRLSSRTR+RDL+ LF RYGRVRDVDMKRDYAF+EFSDPRDADDA
Sbjct: 1   MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60

Query: 61  RYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRG-PPGTGRCFNCGLDGHWARDCK 120
           RY L+GRD  GSRITVE ++G PRG      R+   RG PPG+GRCFNCG+DGHWARDC 
Sbjct: 61  RYYLDGRDFDGSRITVEASRGAPRG-----SRDNGSRGPPPGSGRCFNCGVDGHWARDCT 120

Query: 121 AGDWKNKCYRCGERGHIEKNCQNSP---KKLKRGSYSRSP----SPRRGR--SRSRSYSR 180
           AGDWKNKCYRCGERGHIE+NC+NSP   K  + GSYSRSP    SPRR R  SRSRSYSR
Sbjct: 121 AGDWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPVKSRSPRRRRSPSRSRSYSR 180

Query: 181 GRSYSRSRSPVKRERSVERSDRRSRSP----RDRSPKRHSES-PPPSKAMKRSPTPDDRS 240
           GRSYSRSRSPV+RE+SVE    RSRSP    R  SPK   +S  P  K +  SP      
Sbjct: 181 GRSYSRSRSPVRREKSVE---DRSRSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDY 240

Query: 241 PVEARRSPSPENRNSP-RGSSRSP---RGRSRSPMDEAEDLNGSRGEENGYSRSP 277
               + + +  N  SP  G   SP    G+ RSP+D+  +L  SR    G S SP
Sbjct: 241 DGSPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDDEAEL--SRPSPKG-SESP 284

[Close]

BLAST of Sed0017014 vs. TAIR 10
Match: AT2G37340.3 (arginine/serine-rich zinc knuckle-containing protein 33 )

HSP 1 Score: 216.1 bits (549), Expect = 3.9e-56
Identity = 149/275 (54.18%), Postives = 175/275 (63.64%), Query Frame = 0


Query: 42  MKRDYAFIEFSDPRDADDARYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPG 101
           MKRDYAF+EF DPRDADDAR+ L+GRD  GSRITVE ++G PR   G RD +  G  PPG
Sbjct: 1   MKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPR---GSRDFDSRG-PPPG 60

Query: 102 TGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR-GSYSRSP---- 161
            GRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIE+NC+NSPKKL+R GSYSRSP    
Sbjct: 61  AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSR 120

Query: 162 SPRRGRSRSRSYSRGRSYSRSRSPV-KRERSVERSDRRSRSPRDRSPKRHSESPPPSKAM 221
           SPRR RS SRS SR RSYSRSRSPV +RERSVE         R RSPKR  +S  P +A 
Sbjct: 121 SPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEE--------RSRSPKRMDDSLSP-RAR 180

Query: 222 KRSPTPDDRSPVEARRSPSPENRNSPRGSSRSPRGRSRSPMDEAEDLNGSRGEENGYSRS 281
            RSP  DD                SP+    SP    +   +   D +G   ++NG +  
Sbjct: 181 DRSPVLDD--------------EGSPKIIDGSPPPSPKLQKEVGSDRDGGSPQDNGRNSV 240

Query: 282 PSPLA-----REEKSQSPVND--EDNGSPRGGSES 304
            SP+        ++ +SPV+D  E N +   GSES
Sbjct: 241 VSPVVGAGGDSSKEDRSPVDDDYEPNRTSPRGSES 248

[Close]

BLAST of Sed0017014 vs. TAIR 10
Match: AT3G53500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-54
Identity = 148/254 (58.27%), Postives = 169/254 (66.54%), Query Frame = 0


Query: 42  MKRDYAFIEFSDPRDADDARYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRG-PP 101
           MKRDYAF+EFSDPRDADDARY L+GRD  GSRITVE ++G PRG      R+   RG PP
Sbjct: 1   MKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRG-----SRDNGSRGPPP 60

Query: 102 GTGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSP---KKLKRGSYSRSP- 161
           G+GRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIE+NC+NSP   K  + GSYSRSP 
Sbjct: 61  GSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPV 120

Query: 162 ---SPRRGR--SRSRSYSRGRSYSRSRSPVKRERSVERSDRRSRSP----RDRSPKRHSE 221
              SPRR R  SRSRSYSRGRSYSRSRSPV+RE+SVE    RSRSP    R  SPK   +
Sbjct: 121 KSRSPRRRRSPSRSRSYSRGRSYSRSRSPVRREKSVE---DRSRSPKAMERSVSPKGRDQ 180

Query: 222 S-PPPSKAMKRSPTPDDRSPVEARRSPSPENRNSP-RGSSRSP---RGRSRSPMDEAEDL 277
           S  P  K +  SP          + + +  N  SP  G   SP    G+ RSP+D+  +L
Sbjct: 181 SLSPDRKVIDASPKRGSDYDGSPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDDEAEL 240

[Close]

BLAST of Sed0017014 vs. TAIR 10
Match: AT2G37340.2 (arginine/serine-rich zinc knuckle-containing protein 33 )

HSP 1 Score: 199.9 bits (507), Expect = 2.9e-51
Identity = 142/267 (53.18%), Postives = 167/267 (62.55%), Query Frame = 0


Query: 50  EFSDPRDADDARYSLNGRDVHGSRITVEIAKGVPRGPGGHRDREQLGRGPPGTGRCFNCG 109
           EF DPRDADDAR+ L+GRD  GSRITVE ++G PR   G RD +  G  PPG GRCFNCG
Sbjct: 20  EFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPR---GSRDFDSRG-PPPGAGRCFNCG 79

Query: 110 LDGHWARDCKAGDWKNKCYRCGERGHIEKNCQNSPKKLKR-GSYSRSP----SPRRGRSR 169
           +DGHWARDC AGDWKNKCYRCGERGHIE+NC+NSPKKL+R GSYSRSP    SPRR RS 
Sbjct: 80  VDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSRSPRRRRSP 139

Query: 170 SRSYSRGRSYSRSRSPV-KRERSVERSDRRSRSPRDRSPKRHSESPPPSKAMKRSPTPDD 229
           SRS SR RSYSRSRSPV +RERSVE         R RSPKR  +S  P +A  RSP  DD
Sbjct: 140 SRSLSRSRSYSRSRSPVRRRERSVEE--------RSRSPKRMDDSLSP-RARDRSPVLDD 199

Query: 230 RSPVEARRSPSPENRNSPRGSSRSPRGRSRSPMDEAEDLNGSRGEENGYSRSPSPLA--- 289
                           SP+    SP    +   +   D +G   ++NG +   SP+    
Sbjct: 200 --------------EGSPKIIDGSPPPSPKLQKEVGSDRDGGSPQDNGRNSVVSPVVGAG 259

Query: 290 --REEKSQSPVND--EDNGSPRGGSES 304
               ++ +SPV+D  E N +   GSES
Sbjct: 260 GDSSKEDRSPVDDDYEPNRTSPRGSES 259

The following BLAST results are available for this feature:

BLAST of Sed0017014 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892927.1	2.3e-138	88.42	serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Benincasa hispida] ...	[more]
XP_022942535.1	3.0e-138	84.76	serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucurbita moschata]...	[more]
XP_022993126.1	2.5e-137	86.21	serine/arginine-rich splicing factor RS2Z32-like isoform X3 [Cucurbita maxima]	[more]
XP_023541883.1	2.1e-136	81.23	serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cucurbita pepo subs...	[more]
XP_008445806.1	3.6e-136	87.90	PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X2 [Cucumis ...	[more]

BLAST of Sed0017014 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYA5	5.2e-77	58.54	Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9FYB7	1.7e-75	62.37	Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q3T106	4.0e-21	40.16	Serine/arginine-rich splicing factor 7 OS=Bos taurus OX=9913 GN=SRSF7 PE=2 SV=1	[more]
Q16629	2.6e-20	41.04	Serine/arginine-rich splicing factor 7 OS=Homo sapiens OX=9606 GN=SRSF7 PE=1 SV=...	[more]
Q23121	1.4e-18	32.82	Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans OX=62...	[more]

BLAST of Sed0017014 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FWH1	1.4e-138	84.76	serine/arginine-rich splicing factor RS2Z32-like isoform X1 OS=Cucurbita moschat...	[more]
A0A6J1JVG4	1.2e-137	86.21	serine/arginine-rich splicing factor RS2Z32-like isoform X3 OS=Cucurbita maxima ...	[more]
A0A1S3BDJ7	1.8e-136	87.90	serine/arginine-rich splicing factor RS2Z32-like isoform X2 OS=Cucumis melo OX=3...	[more]
A0A0A0KS31	5.1e-136	87.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177110 PE=4 SV=1	[more]
A0A6J1JXF9	1.5e-135	81.60	serine/arginine-rich splicing factor RS2Z32-like isoform X2 OS=Cucurbita maxima ...	[more]

BLAST of Sed0017014 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37340.1	3.7e-78	58.54	arginine/serine-rich zinc knuckle-containing protein 33	[more]
AT3G53500.2	1.2e-76	62.37	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G37340.3	3.9e-56	54.18	arginine/serine-rich zinc knuckle-containing protein 33	[more]
AT3G53500.1	1.3e-54	58.27	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G37340.2	2.9e-51	53.18	arginine/serine-rich zinc knuckle-containing protein 33	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 81..97 e-value: 1.3E-4 score: 31.3 coord: 103..119 e-value: 0.0022 score: 27.3
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 81..96 e-value: 1.1E-5 score: 25.3 coord: 102..118 e-value: 1.6E-4 score: 21.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 81..96 score: 10.180168
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 103..119 score: 10.575755
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..70 e-value: 9.4E-11 score: 43.7
None	No IPR available	GENE3D	4.10.60.10		coord: 101..141 e-value: 9.2E-6 score: 27.2 coord: 71..100 e-value: 1.3E-6 score: 29.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..148
None	No IPR available	PANTHER	PTHR23147:SF152	SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33	coord: 12..261
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 12..261
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 17..51 e-value: 4.4E-6 score: 26.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..58 score: 10.087302
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..81
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 75..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017014.1	Sed0017014.1	mRNA
Sed0017014.2	Sed0017014.2	mRNA
Sed0017014.3	Sed0017014.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding