Sed0016982 (gene) Chayote v1

Overview


Name	Sed0016982
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Splicing factor YJU2
Location	LG08: 38869579 .. 38870778 (-)
RNA-Seq Expression	Sed0016982
Synteny	Sed0016982

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCCGGCGTGTTAGGGTTTGTTCTCCGGCGTGTTAGGGTTTGTTCTTCATTTCCCCATTCCGTTTTTTCATTCGAATTTTACGATAAAATGGGAGAGAGGAAGGTGCTGAACAAATACTACCCACCGGACTTTGATCCATCAAAGCTTCCAAGGGTTCGTAGGCTCAAAAACCACCAAATGAAGATCCGAATGATGCTTCCTATGAGCATTCGATGCAATACTTGCGGTAATTACATATACAAGGGCACCAAGTTCAATTCTCGCAAGGAAGACGTACTTGGCGAGTCCTATTTAGGAATTCAGATTTTTAGATTCTACTTCAAATGTACCCGATGTTCTGCTGAGCTCGCCATGAAAACCGACCCCCAAAACTCCGATTACGTTGTGGAATCGGGAGCTACACGTAACTTTGAACCGTGGCGCGAGGAGGATGAAGCTTTAGAGATGGAGAAACGCAGAAGGAATGCTGAAGAGCTTGGAGATGCAATGAAGTCTTTGGAGAATAGAGCATTGGATTCTAAACGCGAGATCGACATCGTTGCTGCTTTGGATGAGATGAAGTCTATGAAGTCCAGGCACGCAACTGTGAGTATTGATTCGATGCTTGCGGCTTTGCAAAGGACTGCGGCCGAAAAGGAAAAGAAGGTAGAAGAAGAGGATGAGGCATTGATAAAATCAATAGTCTTCAACTCAAACAATTGTTATGTTAGAAGAATTTCCGAGACTGAATTTGATGATCATTCAATCAACACTGCTAACAAGCAAAAGGTTTCTGAAGAATCTCCTGCTAAGTTTGTTTCTAAATCTTTGCCAGTTAGAGTTTCTATCATTAAGAAACCAGACTTGACTGCTCATGTGGAGAAGAATCAAAGGTTGGAAGTTCAAATCCATGATACAAACTCTGGGCTTGAGTCATTGTGCCAATATGATAGTGATGAGGATTGATATATACATTCTGTCTTCATAAAATATTTTTTTTGAAATAAGGGTAGCCACGCCCTTCCAGGGTAACCACGTCCGTTCCAATGCCAGACACCGGACAAGTTTATATCGTTTTGTATTAGCATCATGTAATATCATTGGATTCATGAGGGGTAGGTATTTTGTTCTGAATTATCACAAATGGTTAGCTATTGACTTTTAGAGGAAGTGATTAGTATTATAACCAAAAAAATAAAAATTCTCCCTTCTCTCAAG

mRNA sequence

TTCTCCGGCGTGTTAGGGTTTGTTCTCCGGCGTGTTAGGGTTTGTTCTTCATTTCCCCATTCCGTTTTTTCATTCGAATTTTACGATAAAATGGGAGAGAGGAAGGTGCTGAACAAATACTACCCACCGGACTTTGATCCATCAAAGCTTCCAAGGGTTCGTAGGCTCAAAAACCACCAAATGAAGATCCGAATGATGCTTCCTATGAGCATTCGATGCAATACTTGCGGTAATTACATATACAAGGGCACCAAGTTCAATTCTCGCAAGGAAGACGTACTTGGCGAGTCCTATTTAGGAATTCAGATTTTTAGATTCTACTTCAAATGTACCCGATGTTCTGCTGAGCTCGCCATGAAAACCGACCCCCAAAACTCCGATTACGTTGTGGAATCGGGAGCTACACGTAACTTTGAACCGTGGCGCGAGGAGGATGAAGCTTTAGAGATGGAGAAACGCAGAAGGAATGCTGAAGAGCTTGGAGATGCAATGAAGTCTTTGGAGAATAGAGCATTGGATTCTAAACGCGAGATCGACATCGTTGCTGCTTTGGATGAGATGAAGTCTATGAAGTCCAGGCACGCAACTGTGAGTATTGATTCGATGCTTGCGGCTTTGCAAAGGACTGCGGCCGAAAAGGAAAAGAAGGTAGAAGAAGAGGATGAGGCATTGATAAAATCAATAGTCTTCAACTCAAACAATTGTTATGTTAGAAGAATTTCCGAGACTGAATTTGATGATCATTCAATCAACACTGCTAACAAGCAAAAGGTTTCTGAAGAATCTCCTGCTAAGTTTGTTTCTAAATCTTTGCCAGTTAGAGTTTCTATCATTAAGAAACCAGACTTGACTGCTCATGTGGAGAAGAATCAAAGGTTGGAAGTTCAAATCCATGATACAAACTCTGGGCTTGAGTCATTGTGCCAATATGATAGTGATGAGGATTGATATATACATTCTGTCTTCATAAAATATTTTTTTTGAAATAAGGGTAGCCACGCCCTTCCAGGGTAACCACGTCCGTTCCAATGCCAGACACCGGACAAGTTTATATCGTTTTGTATTAGCATCATGTAATATCATTGGATTCATGAGGGGTAGGTATTTTGTTCTGAATTATCACAAATGGTTAGCTATTGACTTTTAGAGGAAGTGATTAGTATTATAACCAAAAAAATAAAAATTCTCCCTTCTCTCAAG

Coding sequence (CDS)

ATGGGAGAGAGGAAGGTGCTGAACAAATACTACCCACCGGACTTTGATCCATCAAAGCTTCCAAGGGTTCGTAGGCTCAAAAACCACCAAATGAAGATCCGAATGATGCTTCCTATGAGCATTCGATGCAATACTTGCGGTAATTACATATACAAGGGCACCAAGTTCAATTCTCGCAAGGAAGACGTACTTGGCGAGTCCTATTTAGGAATTCAGATTTTTAGATTCTACTTCAAATGTACCCGATGTTCTGCTGAGCTCGCCATGAAAACCGACCCCCAAAACTCCGATTACGTTGTGGAATCGGGAGCTACACGTAACTTTGAACCGTGGCGCGAGGAGGATGAAGCTTTAGAGATGGAGAAACGCAGAAGGAATGCTGAAGAGCTTGGAGATGCAATGAAGTCTTTGGAGAATAGAGCATTGGATTCTAAACGCGAGATCGACATCGTTGCTGCTTTGGATGAGATGAAGTCTATGAAGTCCAGGCACGCAACTGTGAGTATTGATTCGATGCTTGCGGCTTTGCAAAGGACTGCGGCCGAAAAGGAAAAGAAGGTAGAAGAAGAGGATGAGGCATTGATAAAATCAATAGTCTTCAACTCAAACAATTGTTATGTTAGAAGAATTTCCGAGACTGAATTTGATGATCATTCAATCAACACTGCTAACAAGCAAAAGGTTTCTGAAGAATCTCCTGCTAAGTTTGTTTCTAAATCTTTGCCAGTTAGAGTTTCTATCATTAAGAAACCAGACTTGACTGCTCATGTGGAGAAGAATCAAAGGTTGGAAGTTCAAATCCATGATACAAACTCTGGGCTTGAGTCATTGTGCCAATATGATAGTGATGAGGATTGA

Protein sequence

MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRKEDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEMEKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTAAEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHSINTANKQKVSEESPAKFVSKSLPVRVSIIKKPDLTAHVEKNQRLEVQIHDTNSGLESLCQYDSDED

Homology

[Close]

BLAST of Sed0016982 vs. NCBI nr
Match: XP_038895471.1 (splicing factor YJU2 [Benincasa hispida] >XP_038895472.1 splicing factor YJU2 [Benincasa hispida])

HSP 1 Score: 449.5 bits (1155), Expect = 2.1e-122
Identity = 243/328 (74.09%), Postives = 262/328 (79.88%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRR KN QMK+RMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQIFRFYFKCTRCSAEL +KTDPQNSDYVVESGATRNFEPWREEDEA E 
Sbjct: 61  EDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGATRNFEPWREEDEAFEK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK +RNAEE+GD MKSLENR LDSKRE+DI+AALDEMKSMKSRHA VSIDSML ALQRT 
Sbjct: 121 EKHKRNAEEMGDPMKSLENRTLDSKREMDILAALDEMKSMKSRHANVSIDSMLMALQRTT 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHS---------INT----ANKQK 240
           AEKEKK+EEEDEALIKSIVFN++N +VRRIS+ EFDD S         + T    A KQK
Sbjct: 181 AEKEKKLEEEDEALIKSIVFNNSNNFVRRISDEEFDDSSHFVQHLTNNVKTSDFKAKKQK 240

Query: 241 VSEESP------------------------------AKFVSKSLPVRVSIIKKPDLTAHV 286
           VSEESP                              AKFVSKSLPV VSI KKP+LTA V
Sbjct: 241 VSEESPHDPTSTSEKAVVLNSLTGEGKDGNVGTSSDAKFVSKSLPVIVSIKKKPELTARV 300

[Close]

BLAST of Sed0016982 vs. NCBI nr
Match: XP_004149128.1 (splicing factor YJU2 [Cucumis sativus] >KGN50783.2 hypothetical protein Csa_018408 [Cucumis sativus])

HSP 1 Score: 444.1 bits (1141), Expect = 9.0e-121
Identity = 240/327 (73.39%), Postives = 259/327 (79.20%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRR KN QMK+RMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQIFRFYFKCTRCSAEL +KTDPQNSDYVVESGATRNFEPWREEDEA E 
Sbjct: 61  EDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGATRNFEPWREEDEASEK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK +RNAEE+GDAMKSLENR LDSKRE+DI+AALDEMKSMKSRHATVSIDSML ALQRTA
Sbjct: 121 EKHKRNAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTA 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHSI------------NTANKQKV 240
           AEKEKK+EEEDEALIKSIVFN++N YVRRIS+ EFDD SI              A KQ+V
Sbjct: 181 AEKEKKLEEEDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRV 240

Query: 241 SEESP------------------------------AKFVSKSLPVRVSIIKKPDLTAHVE 286
           SE SP                               KFVSKS PV VSI KKP++TA VE
Sbjct: 241 SEGSPHDPTSTSSKAGFLHSRMGEGEDGNIGTSTDTKFVSKSFPVIVSIKKKPEVTARVE 300

[Close]

BLAST of Sed0016982 vs. NCBI nr
Match: XP_031745804.1 (LOW QUALITY PROTEIN: splicing factor YJU2-like [Cucumis sativus])

HSP 1 Score: 443.7 bits (1140), Expect = 1.2e-120
Identity = 240/327 (73.39%), Postives = 259/327 (79.20%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRR KN QMK+RMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQIFRFYFKCTRCSAEL +KTDPQNSDYVVESGATRNFEPWREEDEA E 
Sbjct: 61  EDVIGETYLGIQIFRFYFKCTRCSAELXIKTDPQNSDYVVESGATRNFEPWREEDEASEK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK +RNAEE+GDAMKSLENR LDSKRE+DI+AALDEMKSMKSRHATVSIDSML ALQRTA
Sbjct: 121 EKHKRNAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQRTA 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHSI------------NTANKQKV 240
           AEKEKK+EEEDEALIKSIVFN++N YVRRIS+ EFDD SI              A KQ+V
Sbjct: 181 AEKEKKLEEEDEALIKSIVFNNSNSYVRRISDDEFDDGSIVQHLTNNDIASDFKAKKQRV 240

Query: 241 SEESP------------------------------AKFVSKSLPVRVSIIKKPDLTAHVE 286
           SE SP                               KFVSKS PV VSI KKP++TA VE
Sbjct: 241 SEGSPHDPTSTSSKAGFLHSRMGEGEDGNIGTSTDTKFVSKSFPVIVSIKKKPEVTARVE 300

[Close]

BLAST of Sed0016982 vs. NCBI nr
Match: XP_022965295.1 (coiled-coil domain-containing protein 94 homolog [Cucurbita maxima] >XP_022965296.1 coiled-coil domain-containing protein 94 homolog [Cucurbita maxima])

HSP 1 Score: 443.4 bits (1139), Expect = 1.5e-120
Identity = 241/329 (73.25%), Postives = 262/329 (79.64%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRR KN QM +RMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMNVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQ+FRFYFKCTRCSAEL +KTDP+NSDY VESGATRNFEPWR+EDEA E 
Sbjct: 61  EDVIGETYLGIQLFRFYFKCTRCSAELTIKTDPKNSDYTVESGATRNFEPWRDEDEASEK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK +RNAEE+GD MKSLENR LDSKRE+DI+AALDEMKSMKSRHATVSIDSML ALQ+TA
Sbjct: 121 EKHKRNAEEMGDPMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQQTA 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDD------HSINT-------ANKQK 240
           AEKEKK+EEEDEALIKSIVFN++N YVRRIS+ EFDD      HS +        A KQK
Sbjct: 181 AEKEKKLEEEDEALIKSIVFNNSNNYVRRISDDEFDDNNHFVQHSTSNDETFDFRAKKQK 240

Query: 241 VSEESP------------------------------AKFVSKSLPVRVSIIKKPDLTAHV 286
           +SEE P                              +KFVSKSLPVRVSIIKKP+LTA V
Sbjct: 241 ISEEFPHDPTNTSTKAAVLHALKGEGSDGNVGTSSVSKFVSKSLPVRVSIIKKPELTARV 300

[Close]

BLAST of Sed0016982 vs. NCBI nr
Match: XP_022923549.1 (coiled-coil domain-containing protein 94 homolog [Cucurbita moschata])

HSP 1 Score: 443.0 bits (1138), Expect = 2.0e-120
Identity = 241/329 (73.25%), Postives = 260/329 (79.03%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRR KN QM +RMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMNVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQ+FRFYFKCTRCSAEL +KTDP+NSDY VESGATRNFEPWR+EDEA E 
Sbjct: 61  EDVIGETYLGIQLFRFYFKCTRCSAELTIKTDPKNSDYTVESGATRNFEPWRDEDEASEK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK +RNAEE+GD MKSLENR LDSKRE+DI+AALDEMKSMKSRHATVSIDSML ALQ+TA
Sbjct: 121 EKHKRNAEEMGDPMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLTALQQTA 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDD------HSINT-------ANKQK 240
           AEKEKK+EEEDEALIKSIVFN +N YVRRIS+ EFDD      HS N        A KQK
Sbjct: 181 AEKEKKLEEEDEALIKSIVFNKSNNYVRRISDDEFDDNNHFVQHSTNNDETFDFRAKKQK 240

Query: 241 VSEESP------------------------------AKFVSKSLPVRVSIIKKPDLTAHV 286
           +SEE P                              +KFVSKSLPVRVSIIKKP+LTA V
Sbjct: 241 ISEEFPHDPTNTSTKAAVLNALTGEGSDGNVGTSSVSKFVSKSLPVRVSIIKKPELTARV 300

[Close]

BLAST of Sed0016982 vs. ExPASy Swiss-Prot
Match: Q54WR5 (Splicing factor YJU2 OS=Dictyostelium discoideum OX=44689 GN=yju2 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.7e-56
Identity = 109/231 (47.19%), Postives = 166/231 (71.86%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKV++KYYPPDFDPSK+ +++  +    K+  MLPMSIRCNTCG YI +GTKFN++K
Sbjct: 1   MGERKVISKYYPPDFDPSKVAKIKVKRPTFTKVTTMLPMSIRCNTCGEYIGRGTKFNAKK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           E V  E YLGI+I+RF+ +C +C+AEL +KTDP+NS+YV ESGATRN+EPW+E DE  + 
Sbjct: 61  ETVQNEDYLGIKIYRFFLRCKKCAAELTIKTDPKNSEYVCESGATRNYEPWKETDEE-KS 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
            +  +  EE  DAM +LENR L+SKRE++++ AL+E+KS+ SR++ +  + +L    +  
Sbjct: 121 NRMTKEQEEEQDAMIALENRTLESKREMEMLDALEEIKSLNSRNSEIDTEQLLEYNLQKQ 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHSINTANKQKVSEE 232
             +EK  +EED+ L+KSI  N N   + +I++    +++I++   +++  +
Sbjct: 181 ELEEKLQDEEDDLLVKSIFNNKNKLELNQINDNNSINNNIDSNKIKRIEND 230

[Close]

BLAST of Sed0016982 vs. ExPASy Swiss-Prot
Match: A8WHR3 (Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.2e-52
Identity = 103/227 (45.37%), Postives = 149/227 (65.64%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           M ERKVLNKYYPPDFDPSK+P+++  K+ Q  +R+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1   MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           E V  E YLG+ IFRFY KCTRC AE+  KTDP+N+DY +E GATRNF+  +  +E  + 
Sbjct: 61  ETVQNELYLGLPIFRFYIKCTRCLAEITFKTDPENTDYAMEHGATRNFQAEKLIEEEEKK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
            ++ R  EEL + MK LENR  DSK E++++  L E+K +  R A V  + ML   +   
Sbjct: 121 IQQEREDEELNNPMKVLENRTRDSKLEMEVLENLQELKELNQRQAQVDFEGMLGQYKELE 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHSINTANKQK 228
             ++++ +EEDE   K ++       V+R+ +++ ++ + N   + K
Sbjct: 181 QRQKQREQEEDEQETKEML---ERALVKRLRDSDSEEEAENAKERSK 224

[Close]

BLAST of Sed0016982 vs. ExPASy Swiss-Prot
Match: Q9D6J3 (Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.0e-51
Identity = 102/214 (47.66%), Postives = 146/214 (68.22%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           M ERKVLNKYYPPDFDPSK+P+++  K+ Q  +R+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1   MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           E V  E+YLG+ IFRFY KCTRC AE+  KTDP+N+DY +E GATRNF+  +  +E  + 
Sbjct: 61  ETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKR 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
            ++ R  EEL + MK LENR  DSK E++++  L E+K +  R A V  ++ML   + + 
Sbjct: 121 VQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRMSQ 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETE 215
            + +++ EEEDE    +++  + +  +   SE+E
Sbjct: 181 EQWQQQQEEEDERETAALLEEARHRRLLEDSESE 214

[Close]

BLAST of Sed0016982 vs. ExPASy Swiss-Prot
Match: Q9BW85 (Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.5e-51
Identity = 99/192 (51.56%), Postives = 135/192 (70.31%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           M ERKVLNKYYPPDFDPSK+P+++  K+ Q  +R+M P ++RC TCG YIYKG KFN+RK
Sbjct: 1   MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           E V  E YLG+ IFRFY KCTRC AE+  KTDP+N+DY +E GATRNF+  +  +E  + 
Sbjct: 61  ETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKR 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
            ++ R  EEL + MK LENR  DSK E++++  L E+K +  R A V  ++ML   + + 
Sbjct: 121 VQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRLSE 180

Query: 181 AEKEKKVEEEDE 193
            E+ ++ +EEDE
Sbjct: 181 EERRRQQQEEDE 192

[Close]

BLAST of Sed0016982 vs. ExPASy Swiss-Prot
Match: Q9P7C5 (Splicing factor YJU2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf16 PE=1 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-43
Identity = 100/226 (44.25%), Postives = 140/226 (61.95%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLK-----NHQMKIRMMLPMSIRCNTCGNYIYKGTK 60
           M ERKVLNKY PPD+DPS  P  ++ K       ++ +R+M P S+RC+TCG YIYKG K
Sbjct: 1   MSERKVLNKYIPPDYDPSIRPPKKKKKFQGPNGGKLTVRLMTPFSMRCHTCGEYIYKGKK 60

Query: 61  FNSRKEDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREE- 120
           FN+RKE   GE Y  I I RFY +CTRC+AE+   TDP+++DY  ESGA+RN+EPW E+ 
Sbjct: 61  FNARKEKT-GEKYFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASRNYEPWHEKR 120

Query: 121 -DEALEMEKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSML 180
             E  E E   RN     D M+ LE + LD+KR++ I  ALDE++   +R + V+ID  +
Sbjct: 121 LQEYEENELAERNDIPEEDEMEKLEQKTLDTKRQMQISDALDELREKSARRSRVNIDDAI 180

Query: 181 AALQRTA--------AEKEKKVEEEDEALIKSIVFNSNNCYVRRIS 212
           A L+  A        ++K K  EEE +   KS+  + +   +RR++
Sbjct: 181 ALLKEDAYGSIEEEESKKRKFEEEEIDREAKSLFSSQDGEIIRRLN 225

[Close]

BLAST of Sed0016982 vs. ExPASy TrEMBL
Match: A0A6J1HNB0 (Splicing factor YJU2 OS=Cucurbita maxima OX=3661 GN=LOC111465203 PE=3 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 7.4e-121
Identity = 241/329 (73.25%), Postives = 262/329 (79.64%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRR KN QM +RMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMNVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQ+FRFYFKCTRCSAEL +KTDP+NSDY VESGATRNFEPWR+EDEA E 
Sbjct: 61  EDVIGETYLGIQLFRFYFKCTRCSAELTIKTDPKNSDYTVESGATRNFEPWRDEDEASEK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK +RNAEE+GD MKSLENR LDSKRE+DI+AALDEMKSMKSRHATVSIDSML ALQ+TA
Sbjct: 121 EKHKRNAEEMGDPMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQQTA 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDD------HSINT-------ANKQK 240
           AEKEKK+EEEDEALIKSIVFN++N YVRRIS+ EFDD      HS +        A KQK
Sbjct: 181 AEKEKKLEEEDEALIKSIVFNNSNNYVRRISDDEFDDNNHFVQHSTSNDETFDFRAKKQK 240

Query: 241 VSEESP------------------------------AKFVSKSLPVRVSIIKKPDLTAHV 286
           +SEE P                              +KFVSKSLPVRVSIIKKP+LTA V
Sbjct: 241 ISEEFPHDPTNTSTKAAVLHALKGEGSDGNVGTSSVSKFVSKSLPVRVSIIKKPELTARV 300

[Close]

BLAST of Sed0016982 vs. ExPASy TrEMBL
Match: A0A6J1E6Q8 (Splicing factor YJU2 OS=Cucurbita moschata OX=3662 GN=LOC111431206 PE=3 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 9.7e-121
Identity = 241/329 (73.25%), Postives = 260/329 (79.03%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRR KN QM +RMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMNVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQ+FRFYFKCTRCSAEL +KTDP+NSDY VESGATRNFEPWR+EDEA E 
Sbjct: 61  EDVIGETYLGIQLFRFYFKCTRCSAELTIKTDPKNSDYTVESGATRNFEPWRDEDEASEK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK +RNAEE+GD MKSLENR LDSKRE+DI+AALDEMKSMKSRHATVSIDSML ALQ+TA
Sbjct: 121 EKHKRNAEEMGDPMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLTALQQTA 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDD------HSINT-------ANKQK 240
           AEKEKK+EEEDEALIKSIVFN +N YVRRIS+ EFDD      HS N        A KQK
Sbjct: 181 AEKEKKLEEEDEALIKSIVFNKSNNYVRRISDDEFDDNNHFVQHSTNNDETFDFRAKKQK 240

Query: 241 VSEESP------------------------------AKFVSKSLPVRVSIIKKPDLTAHV 286
           +SEE P                              +KFVSKSLPVRVSIIKKP+LTA V
Sbjct: 241 ISEEFPHDPTNTSTKAAVLNALTGEGSDGNVGTSSVSKFVSKSLPVRVSIIKKPELTARV 300

[Close]

BLAST of Sed0016982 vs. ExPASy TrEMBL
Match: A0A6J1HYT1 (Splicing factor YJU2 OS=Cucurbita maxima OX=3661 GN=LOC111469322 PE=3 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.4e-119
Identity = 236/329 (71.73%), Postives = 262/329 (79.64%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRR KN Q+K+RMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQ+FRFYFKCTRCSAEL +KTDPQNSDY+VESGATRNFEPWREEDE  E 
Sbjct: 61  EDVVGETYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK +RNAEE+GDAMKSLENR LDSKRE+DI+AALDEMKSMKSRHATVSIDSML ALQ+TA
Sbjct: 121 EKHKRNAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTA 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHSIN-------------TANKQK 240
           AEKEKK+EEEDEALIKSIVFN++N YVRRIS+ +FD  S +              A KQK
Sbjct: 181 AEKEKKLEEEDEALIKSIVFNNSNNYVRRISDDQFDGSSPSEQPSTNNDKTSNINAKKQK 240

Query: 241 VSEESP------------------------------AKFVSKSLPVRVSIIKKPDLTAHV 286
           +SEESP                              AKF+SKSL ++VSIIKKP+LT  V
Sbjct: 241 LSEESPHDDPTTTPKDVILHSLTGEGGDGNGATSSDAKFISKSLSIKVSIIKKPELTPRV 300

[Close]

BLAST of Sed0016982 vs. ExPASy TrEMBL
Match: A0A6J1EW00 (Splicing factor YJU2 OS=Cucurbita moschata OX=3662 GN=LOC111438528 PE=3 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 5.3e-119
Identity = 235/329 (71.43%), Postives = 262/329 (79.64%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRR KN Q+K+RMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQ+FRFYFKCTRCSAEL +KTDPQNSDY+VESGATRNFEPWREEDE  E 
Sbjct: 61  EDVVGETYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK +R+AEE+GDAMKSLENR LDSKRE+DI+AALDEMKSMKSRHATVSIDSML ALQ+TA
Sbjct: 121 EKHKRSAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTA 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHSIN-------------TANKQK 240
           AEKEKK+EEEDEALIKSIVFN++N YV+RIS+ +FDD S +              A KQK
Sbjct: 181 AEKEKKLEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQK 240

Query: 241 VSEESP------------------------------AKFVSKSLPVRVSIIKKPDLTAHV 286
           +SEESP                              AK +SKSL ++VSIIKKP+LT  V
Sbjct: 241 LSEESPHDDPTTTTKDAILHSLTGEGGDGNGATSGDAKLISKSLSIKVSIIKKPELTPRV 300

[Close]

BLAST of Sed0016982 vs. ExPASy TrEMBL
Match: A0A6J1E3A4 (Splicing factor YJU2 OS=Momordica charantia OX=3673 GN=LOC111025649 PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 9.7e-113
Identity = 231/326 (70.86%), Postives = 252/326 (77.30%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRR KN Q+K+RMMLPMSIRCNTCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQIKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQIFRFYFKCTRCSAEL +KTDPQNSDYVVESGATRNFEPWREEDEA E 
Sbjct: 61  EDVIGETYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGATRNFEPWREEDEASEK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK +RNAEE+GD MKSLENR LDSKRE+DI+AALDEMKSMKSRHATVSIDSML ALQ+TA
Sbjct: 121 EKHKRNAEEMGDPMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLMALQQTA 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHSI----------NTANKQKVSE 240
           AEKEKK+EEEDEALIKSIVFN++  YVRRI + EFDD S            +A KQKV E
Sbjct: 181 AEKEKKLEEEDEALIKSIVFNNSKDYVRRIPDDEFDDGSHFVTNNDKTSGTSAKKQKVLE 240

Query: 241 ESP------------------------------AKFVSKSLPVRVSIIKKPDLTAHVEKN 286
           ESP                              A+FVSKSL ++VSIIKKP+LT  V+  
Sbjct: 241 ESPHDPTSTSTKAVILNSLTDEGNDSSVGTSDDARFVSKSLSIKVSIIKKPELTNPVDNE 300

[Close]

BLAST of Sed0016982 vs. TAIR 10
Match: AT1G17130.1 (Family of unknown function (DUF572) )

HSP 1 Score: 344.7 bits (883), Expect = 6.9e-95
Identity = 168/217 (77.42%), Postives = 196/217 (90.32%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDP+KL R+RR KN Q+K+RMMLPMS+RC TCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPAKLQRLRRPKNQQIKVRMMLPMSVRCGTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+GE+YLGIQIFRFYFKCT+CSAEL MKTDPQNSDY+VESGA+RN+EPWR EDE ++ 
Sbjct: 61  EDVIGETYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGASRNYEPWRAEDEEVDK 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           +K++R+AEE+GDAMKSLENR LDSKRE+DI+AALDEMKSMKSRHATVS+D+ML ALQRT 
Sbjct: 121 DKQKRDAEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMKSRHATVSVDAMLEALQRTG 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDD 218
           AEK K++EEEDEA+IKSI F      +RRI++ E DD
Sbjct: 181 AEKVKRIEEEDEAVIKSI-FGKQKEVIRRIADEEIDD 216

[Close]

BLAST of Sed0016982 vs. TAIR 10
Match: AT1G17130.2 (Family of unknown function (DUF572) )

HSP 1 Score: 337.8 bits (865), Expect = 8.4e-93
Identity = 168/224 (75.00%), Postives = 196/224 (87.50%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDP+KL R+RR KN Q+K+RMMLPMS+RC TCGNYIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPAKLQRLRRPKNQQIKVRMMLPMSVRCGTCGNYIYKGTKFNSRK 60

Query: 61  EDVLGE-------SYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWRE 120
           EDV+GE       +YLGIQIFRFYFKCT+CSAEL MKTDPQNSDY+VESGA+RN+EPWR 
Sbjct: 61  EDVIGENFSFDVQTYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGASRNYEPWRA 120

Query: 121 EDEALEMEKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSML 180
           EDE ++ +K++R+AEE+GDAMKSLENR LDSKRE+DI+AALDEMKSMKSRHATVS+D+ML
Sbjct: 121 EDEEVDKDKQKRDAEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMKSRHATVSVDAML 180

Query: 181 AALQRTAAEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDD 218
            ALQRT AEK K++EEEDEA+IKSI F      +RRI++ E DD
Sbjct: 181 EALQRTGAEKVKRIEEEDEAVIKSI-FGKQKEVIRRIADEEIDD 223

[Close]

BLAST of Sed0016982 vs. TAIR 10
Match: AT2G32050.1 (Family of unknown function (DUF572) )

HSP 1 Score: 236.9 bits (603), Expect = 2.0e-62
Identity = 138/286 (48.25%), Postives = 182/286 (63.64%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERK LNKYYPP+FDP ++PR+R+ KN Q KIR M+P+ IRCNTCGNY+ +GTK N R+
Sbjct: 1   MGERKGLNKYYPPNFDPKQIPRIRKPKNQQRKIRSMVPLRIRCNTCGNYMSEGTKINCRE 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           E+V+GE+YLGI+I RFYFKC++C  EL +KTDP+NS YV ESGAT  ++   EE++    
Sbjct: 61  ENVIGETYLGIKIHRFYFKCSKCCTELILKTDPKNSSYVAESGATCVYDQHEEEEQ---- 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
                 AE+ GD M SLE R L SKRE+D++AALDEMKSMKSR  +VS+DSML  L +  
Sbjct: 121 ------AEDGGDRMSSLEKRTLVSKREVDVMAALDEMKSMKSRRVSVSVDSMLEDLSKRH 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHSINTANKQKVSEESPAKFVSKS 240
            E+E+  +EED ALIKS  F       RRI + E D+       + +  +E   K  +K 
Sbjct: 181 KEEEEVAKEEDAALIKSTKFGKQ----RRIVDEETDEMEKTKKVRMEAVDEKKPK--TKK 240

Query: 241 LPVRVSIIKKPDLTAHVEKNQRLEVQIHDTNSGLESLC-QYDSDED 286
           L   +++ KK                   T+ GL SLC  Y +DE+
Sbjct: 241 LACIITLKKK-----------------KTTSLGLASLCHNYGADEE 253

[Close]

BLAST of Sed0016982 vs. TAIR 10
Match: AT3G43250.1 (Family of unknown function (DUF572) )

HSP 1 Score: 216.9 bits (551), Expect = 2.2e-56
Identity = 119/235 (50.64%), Postives = 164/235 (69.79%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRLKNHQMKIRMMLPMSIRCNTCGNYIYKGTKFNSRK 60
           MGERK LNKYYPPDFDP K+ R+++ KN Q KIR MLP+ +RCNTCGNY+ +GTKFN R+
Sbjct: 1   MGERKNLNKYYPPDFDPKKIHRIKKPKNQQKKIRFMLPVRVRCNTCGNYMSEGTKFNCRQ 60

Query: 61  EDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQNSDYVVESGATRNFEPWREEDEALEM 120
           EDV+ E+YLG++I RFY KCT+C AEL +KTDP+N  Y VESGA+  +       E +E 
Sbjct: 61  EDVITETYLGLKIHRFYIKCTKCLAELTIKTDPKNHSYTVESGASCLY----NGHEDIEE 120

Query: 121 EKRRRNAEELGDAMKSLENRALDSKREIDIVAALDEMKSMKSRHATVSIDSMLAALQRTA 180
           EK++++     +A++SLENR + SKREI+++A+LDE+KSMKSR A++S+D ML  L R  
Sbjct: 121 EKKKKHE----NALESLENRTVVSKREIEVMASLDELKSMKSRRASLSVDYMLEDLSRRK 180

Query: 181 AEKEKKVEEEDEALIKSIVFNSNNCYVRRISETEFDDHSINTANKQKVSEESPAK 236
            ++E+ VEE  E LIKSI F       +RI   E    +    +++K  ++ P K
Sbjct: 181 KQEEENVEE--ELLIKSIKFG------KRIRTDEEKKKNYEAFDEKKKKKKKPKK 219

[Close]

BLAST of Sed0016982 vs. TAIR 10
Match: AT2G29430.1 (Family of unknown function (DUF572) )

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-21
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 35  MMLPMSIRCNTCGNYIYKGTKFNSRKEDVLGESYLGIQIFRFYFKCTRCSAELAMKTDPQ 94
           + LPM ++CN C N + KGTKF SR EDV+GE+YLGI+IFRF  +CT  S E+  +TDP+
Sbjct: 8   LSLPMRLQCNNCDNIMSKGTKFTSRVEDVIGETYLGIKIFRFQIQCTNGSHEMKFRTDPK 67

Query: 95  NSDYVVESGATRNFEP 111
           N+D+++ESGATR   P
Sbjct: 68  NADFIIESGATRLLLP 83

The following BLAST results are available for this feature:

BLAST of Sed0016982 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895471.1	2.1e-122	74.09	splicing factor YJU2 [Benincasa hispida] >XP_038895472.1 splicing factor YJU2 [B...	[more]
XP_004149128.1	9.0e-121	73.39	splicing factor YJU2 [Cucumis sativus] >KGN50783.2 hypothetical protein Csa_0184...	[more]
XP_031745804.1	1.2e-120	73.39	LOW QUALITY PROTEIN: splicing factor YJU2-like [Cucumis sativus]	[more]
XP_022965295.1	1.5e-120	73.25	coiled-coil domain-containing protein 94 homolog [Cucurbita maxima] >XP_02296529...	[more]
XP_022923549.1	2.0e-120	73.25	coiled-coil domain-containing protein 94 homolog [Cucurbita moschata]	[more]

BLAST of Sed0016982 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54WR5	4.7e-56	47.19	Splicing factor YJU2 OS=Dictyostelium discoideum OX=44689 GN=yju2 PE=3 SV=1	[more]
A8WHR3	3.2e-52	45.37	Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1	[more]
Q9D6J3	2.0e-51	47.66	Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1	[more]
Q9BW85	3.5e-51	51.56	Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1	[more]
Q9P7C5	1.2e-43	44.25	Splicing factor YJU2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2...	[more]

BLAST of Sed0016982 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HNB0	7.4e-121	73.25	Splicing factor YJU2 OS=Cucurbita maxima OX=3661 GN=LOC111465203 PE=3 SV=1	[more]
A0A6J1E6Q8	9.7e-121	73.25	Splicing factor YJU2 OS=Cucurbita moschata OX=3662 GN=LOC111431206 PE=3 SV=1	[more]
A0A6J1HYT1	2.4e-119	71.73	Splicing factor YJU2 OS=Cucurbita maxima OX=3661 GN=LOC111469322 PE=3 SV=1	[more]
A0A6J1EW00	5.3e-119	71.43	Splicing factor YJU2 OS=Cucurbita moschata OX=3662 GN=LOC111438528 PE=3 SV=1	[more]
A0A6J1E3A4	9.7e-113	70.86	Splicing factor YJU2 OS=Momordica charantia OX=3673 GN=LOC111025649 PE=3 SV=1	[more]

BLAST of Sed0016982 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17130.1	6.9e-95	77.42	Family of unknown function (DUF572)	[more]
AT1G17130.2	8.4e-93	75.00	Family of unknown function (DUF572)	[more]
AT2G32050.1	2.0e-62	48.25	Family of unknown function (DUF572)	[more]
AT3G43250.1	2.2e-56	50.64	Family of unknown function (DUF572)	[more]
AT2G29430.1	3.0e-21	56.58	Family of unknown function (DUF572)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 120..147
None	No IPR available	COILS	Coil	Coil	coord: 173..193
None	No IPR available	PANTHER	PTHR12111:SF7	BNAA02G14200D PROTEIN	coord: 1..227
IPR007590	Saf4/Yju2 protein	PFAM	PF04502	DUF572	coord: 9..238 e-value: 2.2E-87 score: 293.8
IPR007590	Saf4/Yju2 protein	PANTHER	PTHR12111	SPLICING FACTOR YJU2	coord: 1..227
IPR043701	Splicing factor Yju2	HAMAP	MF_03226	YJU2	coord: 1..284 score: 23.491331

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016982.1	Sed0016982.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000349	generation of catalytic spliceosome for first transesterification step
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071006	U2-type catalytic step 1 spliceosome
molecular_function	GO:0046872	metal ion binding