Sed0016970 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCGTCTTCAAATCCTAAACCCTAATGTCCGTTTTATAGTTTTCGCCTTCAAGCTTTCTCCTCACCATTTTAGATTTCGTTCTTCATAAATTTGTAGTTGTTCGTTTGTTCGAGTTCAATGGGGGCTAAGGCGAAGAAAGCTTTGAAGAAGAAACTCAATAAGGCCAGTTCTCTCTCCTCCAAAAAGAAGGAATCTGCAGATTTCTTGGTATGTATGTTCTTCGCACGGTTCACCATCCCATTAGACTTGGATTTTTGTTTTGAATTTGGGGTTTTCAGTTCTTAACCTTGAATCTAGGGTTCTATGTACTTAATTCTTGTCTCTTGCCTCTGATTTTCGTGTTTTCTCTGTTTTTAAGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGTACAGAAGCCACTGGAAAGTACTGCTACTGTTCTTTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGTTTTGGCTGCTTACTTTTTTTCCATTCAGTGAAATCTGAAGTATAAGTTTCTTGTTATCTTGTCTGCTACGTACGTCTTTAGCCCTTATCGTTTTTTACAGGGTTTTTCGGACAGTTTGGAAAAGTTAAGAGATTAAGAATTGCACGAAATAGAAAGGTATGGCTCCTATCTGCAAAGGGATTTTCCCGTGATGAAAACATGTTCACCAGGGAAGGTTTCGTTACAATGAATTGCCAGATTTTGTGAGGGGTTTGTTGAATTAGGTTAAATCTCCGATTAACCCAAAATTTTAGACTTATGGATTGGGATAAATTTAATCATATCAACGAACACTTCCCTACTTCCCTTCACTTGTTCGCTTAGAAATGTGAGAATTTTTATTGAGCTAATTGATATTAATTGAGAATGAAATGATTTGACTTGGGTTTGACCATAAGACATGTTGTCTTATTTACAACATGTTGAATTATGTTAAATCACAAACCAGGATAAATTTAATTATGTCAATCTACGTTTGGATGAAAGAAACATAGGGTATTTAGAGATGTGTAGTGCTCTGCTGATGACGCTTGTCGGGTAGTTTGGTTTAAGGCTTTCTTGTGAATGTCGGTCAATAGACTTTTTGTAATTAAGTTAATTTGATTTTGTTGGATTGTAGTATCTATCTGTTTCCTTGTGTACTCTTTCACCTTTCTCAATAAAGCTCCGCTTCTTATAAAAAGAAAAAGGTCACCAGATTGTGCTGATAATCATAACTTCTCACATTCTTGTAAGTATTTTCTTCTTTGGTTTAATTTATGATGTATATTTTATTTTTATATGCAGACCGGGAAGTCGAGGCATTTTGGCTACATTGAATTTGAATCTCCAGAGGTGCTAAATCAATTTCAGGACATTTGTGTCTGTAATTTTCATAGGGTTAGTTATTCATTTTAATCACTTCCAGTTTACCCTAAATTTGGATTTTGTGAGCACAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACCTTCTGAAGGTCCACCTAATTCCTAACGAGCACGTTCATCCTAATCTGTAAGTATACTGCTGCTAGATTTTTCTTGACATGGACATAGTTGAATATTTCAACTAATATGGTATTTCGCTTGAATGGTGTCATATTTACAGATGGAAGGGTTTTAACTATCGCTATAAGCCCTTAAACTGGTCTGAACTTGAGCGTAAACAGCATAATAAGGTATCAATTATCAAGCTTGGAAAATTATCTTTTAGATCATAAAAACACTCATCGGTTTTACTTGTTTTACAATAATTTTTCAGGAAAGGACCTTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTAAGAATCATGATTTTTTCTTAAGATGATTATTACATTTTTGCTGTTTGTTTATTTTAAGAAAATAGTTTATTTGACCAATTATAATTTCTAACTAATGAAGTTTTAACCATCACGAGTTAGTTTTTTTTATATCCGTAACGGTTTGGGCCAACTTGCACACACCTCAACTAATGTCACAAGACATATCATCTAACCCTACAACATTTGGATCTCAAGGAAACTTAAAGGAAATTAATTCTTGGGTAGGTGGTCACCATATCACCTCTAAGTTTTCCCAGACCCTCTTGACTGCTAGGCCACTCCTTGAGAGTTATAGATTCAATCCGTGATAGCCATTTTAGGAGTTAACTTTGAGTTTTCTTGACAACCAAATGTTATCAGACGGTTTGTCTCGTGAGAGTAGTCTAGATGTCCGCAAGTTGGCTTGGACACATGGATATCAAAAAAGAAACATATTGTTTTAATATTGGTGTGGATATTCTGGGGGCAGACATGGTTACCTCGGATAGAGTGGAGCGAAACTATGATGTCTTAGTTTCAAAAATAAAAATAATGTTATGGATAGTTCCGAAACAACCAAATATTGGCATGGATAGTAAAGTAAGCACATTCTTCTCATGGACCATTTGTCCATGAGAAGATGTCTCGCATTTTGTCCCAGAATCTTTTGGCATAGTAGCATGTGATGAATAAGTGCTGTTGAGTTTCTGTGGCTGCTTTGCAAATTATACACCAATTTGGAGATAGTGGTGTTTTGGTAATGGTAGCCTCCTTTGAAGCATCTTACCAGTATTAATGACCTTGTTAAGGAGTTCCCGTAGAAAGAACTTGACGTTCGTAGGGAATTTATCTCTCCATATTGCAGTGTGAATTATATAGTAGGAATGATCAGTTGTACCTCCGATATCACTAATAAGGTTAAGAAGATGATTATGAAATAACTTAGGAACGTACACCCAAAAAGAGACATTTGGCCTAGCATGGGAGTACGTCTCTCAGGAGCTCAAATTGACCCATTTCACTTGTTTTATACGATTGGGATTGGCTACTGTGACTGAGAGCACTTCACCTTTAGATGATTTCCATTTGAAATGCTCTTATTTAGACAATTTTAGGAGATGATATTCAGCTAATCCTTTTATCAATTCTTTCAATAAACCATTGCGGTGGTTGAGGTAAAAAATTATAAGTTCAATCTAGTATAGTCACTATAAATTTCCTTGACAACCAAATGTTTTATAGAGTTAGGTAGTTTGTCTCGGGAGAATAGTCAAATTGTGCGTGTGAGCTCAACAAGTATTAATCTGTAGGGCAAACCAAAACTTGATTTGCGGTGCCATTATTTTAGTGGGGCTGTTTGGCTTTGTACTGATTTCTTGAGTGAATAATTTCGTAGTTTAGCCATCCTAGTATGTTGACTCTGGAGAAATTGCAGGTGGGCAGTGACCAACCAGCGCCTAAGAAGATCAAGTTCGATGAAGATTAGAATGAGCGTTTAGTTCATAGAAGCTAAAGTGTTAATGCAGAAAGGGGAAAGGTGAAGAATGATGGGCTGTTGAGCTGTTGCATCTTTCCAGTTTCTTATGCTGATCTCTAAATTTTGATCTTTGAAATTTTGTCAAACGAATTTTATACTATCTTTAGTTTGTATTGCCTTTTATAAAAATGAAAAGGAAAAAAAAAATTGTATTGAAGCTTGTTTATGGCTTACAAATCTGACTCGCAATGATATGAACTGAATGGTAAATTTGAAAGTCGAACCATGTCAGATCTACTA GCCGTCTTCAAATCCTAAACCCTAATGTCCGTTTTATAGTTTTCGCCTTCAAGCTTTCTCCTCACCATTTTAGATTTCGTTCTTCATAAATTTGTAGTTGTTCGTTTGTTCGAGTTCAATGGGGGCTAAGGCGAAGAAAGCTTTGAAGAAGAAACTCAATAAGGCCAGTTCTCTCTCCTCCAAAAAGAAGGAATCTGCAGATTTCTTGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGTACAGAAGCCACTGGAAAGTACTGCTACTGTTCTTTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGAAAAGTTAAGAGATTAAGAATTGCACGAAATAGAAAGACCGGGAAGTCGAGGCATTTTGGCTACATTGAATTTGAATCTCCAGAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACCTTCTGAAGGTCCACCTAATTCCTAACGAGCACGTTCATCCTAATCTATGGAAGGGTTTTAACTATCGCTATAAGCCCTTAAACTGGTCTGAACTTGAGCGTAAACAGCATAATAAGGAAAGGACCTTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTGGGCAGTGACCAACCAGCGCCTAAGAAGATCAAGTTCGATGAAGATTAGAATGAGCGTTTAGTTCATAGAAGCTAAAGTGTTAATGCAGAAAGGGGAAAGGTGAAGAATGATGGGCTGTTGAGCTGTTGCATCTTTCCAGTTTCTTATGCTGATCTCTAAATTTTGATCTTTGAAATTTTGTCAAACGAATTTTATACTATCTTTAGTTTGTATTGCCTTTTATAAAAATGAAAAGGAAAAAAAAAATTGTATTGAAGCTTGTTTATGGCTTACAAATCTGACTCGCAATGATATGAACTGAATGGTAAATTTGAAAGTCGAACCATGTCAGATCTACTA ATGGGGGCTAAGGCGAAGAAAGCTTTGAAGAAGAAACTCAATAAGGCCAGTTCTCTCTCCTCCAAAAAGAAGGAATCTGCAGATTTCTTGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGTACAGAAGCCACTGGAAAGTACTGCTACTGTTCTTTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGAAAAGTTAAGAGATTAAGAATTGCACGAAATAGAAAGACCGGGAAGTCGAGGCATTTTGGCTACATTGAATTTGAATCTCCAGAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACCTTCTGAAGGTCCACCTAATTCCTAACGAGCACGTTCATCCTAATCTATGGAAGGGTTTTAACTATCGCTATAAGCCCTTAAACTGGTCTGAACTTGAGCGTAAACAGCATAATAAGGAAAGGACCTTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTGGGCAGTGACCAACCAGCGCCTAAGAAGATCAAGTTCGATGAAGATTAG MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEHLLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQARQKRIRAAGIDYECPEIVGSDQPAPKKIKFDED Homology
BLAST of Sed0016970 vs. NCBI nr
Match: XP_008456579.1 (PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo]) HSP 1 Score: 389.0 bits (998), Expect = 2.5e-104 Identity = 194/212 (91.51%), Postives = 202/212 (95.28%), Query Frame = 0
BLAST of Sed0016970 vs. NCBI nr
Match: XP_022134394.1 (uncharacterized RNA-binding protein C1827.05c [Momordica charantia]) HSP 1 Score: 388.3 bits (996), Expect = 4.3e-104 Identity = 195/211 (92.42%), Postives = 202/211 (95.73%), Query Frame = 0
BLAST of Sed0016970 vs. NCBI nr
Match: XP_022922397.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata]) HSP 1 Score: 388.3 bits (996), Expect = 4.3e-104 Identity = 194/212 (91.51%), Postives = 202/212 (95.28%), Query Frame = 0
BLAST of Sed0016970 vs. NCBI nr
Match: XP_022993750.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima]) HSP 1 Score: 387.9 bits (995), Expect = 5.7e-104 Identity = 194/212 (91.51%), Postives = 203/212 (95.75%), Query Frame = 0
BLAST of Sed0016970 vs. NCBI nr
Match: XP_038885284.1 (MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida] >XP_038885285.1 MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida]) HSP 1 Score: 386.3 bits (991), Expect = 1.7e-103 Identity = 192/212 (90.57%), Postives = 202/212 (95.28%), Query Frame = 0
BLAST of Sed0016970 vs. ExPASy Swiss-Prot
Match: O74978 (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1827.05c PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 6.0e-32 Identity = 67/155 (43.23%), Postives = 106/155 (68.39%), Query Frame = 0
BLAST of Sed0016970 vs. ExPASy Swiss-Prot
Match: Q6GL69 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis OX=8364 GN=nifk PE=2 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 6.9e-28 Identity = 62/143 (43.36%), Postives = 93/143 (65.03%), Query Frame = 0
BLAST of Sed0016970 vs. ExPASy Swiss-Prot
Match: Q8JIY8 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=nifk PE=2 SV=2) HSP 1 Score: 125.2 bits (313), Expect = 9.0e-28 Identity = 62/143 (43.36%), Postives = 98/143 (68.53%), Query Frame = 0
BLAST of Sed0016970 vs. ExPASy Swiss-Prot
Match: Q3SZM1 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=NIFK PE=2 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 2.6e-27 Identity = 60/155 (38.71%), Postives = 102/155 (65.81%), Query Frame = 0
BLAST of Sed0016970 vs. ExPASy Swiss-Prot
Match: Q7SYS2 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=8355 GN=nifk PE=2 SV=2) HSP 1 Score: 120.9 bits (302), Expect = 1.7e-26 Identity = 61/146 (41.78%), Postives = 93/146 (63.70%), Query Frame = 0
BLAST of Sed0016970 vs. ExPASy TrEMBL
Match: A0A1S3C4U7 (uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC103496493 PE=4 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 1.2e-104 Identity = 194/212 (91.51%), Postives = 202/212 (95.28%), Query Frame = 0
BLAST of Sed0016970 vs. ExPASy TrEMBL
Match: A0A6J1BYN0 (uncharacterized RNA-binding protein C1827.05c OS=Momordica charantia OX=3673 GN=LOC111006666 PE=4 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 2.1e-104 Identity = 195/211 (92.42%), Postives = 202/211 (95.73%), Query Frame = 0
BLAST of Sed0016970 vs. ExPASy TrEMBL
Match: A0A6J1E350 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662 GN=LOC111430401 PE=4 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 2.1e-104 Identity = 194/212 (91.51%), Postives = 202/212 (95.28%), Query Frame = 0
BLAST of Sed0016970 vs. ExPASy TrEMBL
Match: A0A6J1JZE0 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 GN=LOC111489660 PE=4 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 2.7e-104 Identity = 194/212 (91.51%), Postives = 203/212 (95.75%), Query Frame = 0
BLAST of Sed0016970 vs. ExPASy TrEMBL
Match: A0A0A0KCE3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G044030 PE=4 SV=1) HSP 1 Score: 384.0 bits (985), Expect = 4.0e-103 Identity = 190/212 (89.62%), Postives = 201/212 (94.81%), Query Frame = 0
BLAST of Sed0016970 vs. TAIR 10
Match: AT5G04600.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 274.6 bits (701), Expect = 6.5e-74 Identity = 140/221 (63.35%), Postives = 179/221 (81.00%), Query Frame = 0
BLAST of Sed0016970 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 52.0 bits (123), Expect = 6.9e-07 Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0
BLAST of Sed0016970 vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 52.0 bits (123), Expect = 6.9e-07 Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0
BLAST of Sed0016970 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06 Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 0
BLAST of Sed0016970 vs. TAIR 10
Match: AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 48.9 bits (115), Expect = 5.8e-06 Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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