Sed0016970 (gene) Chayote v1

Overview
NameSed0016970
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRRM domain-containing protein
LocationLG01: 24082318 .. 24086005 (-)
RNA-Seq ExpressionSed0016970
SyntenySed0016970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGTCTTCAAATCCTAAACCCTAATGTCCGTTTTATAGTTTTCGCCTTCAAGCTTTCTCCTCACCATTTTAGATTTCGTTCTTCATAAATTTGTAGTTGTTCGTTTGTTCGAGTTCAATGGGGGCTAAGGCGAAGAAAGCTTTGAAGAAGAAACTCAATAAGGCCAGTTCTCTCTCCTCCAAAAAGAAGGAATCTGCAGATTTCTTGGTATGTATGTTCTTCGCACGGTTCACCATCCCATTAGACTTGGATTTTTGTTTTGAATTTGGGGTTTTCAGTTCTTAACCTTGAATCTAGGGTTCTATGTACTTAATTCTTGTCTCTTGCCTCTGATTTTCGTGTTTTCTCTGTTTTTAAGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGTACAGAAGCCACTGGAAAGTACTGCTACTGTTCTTTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGTTTTGGCTGCTTACTTTTTTTCCATTCAGTGAAATCTGAAGTATAAGTTTCTTGTTATCTTGTCTGCTACGTACGTCTTTAGCCCTTATCGTTTTTTACAGGGTTTTTCGGACAGTTTGGAAAAGTTAAGAGATTAAGAATTGCACGAAATAGAAAGGTATGGCTCCTATCTGCAAAGGGATTTTCCCGTGATGAAAACATGTTCACCAGGGAAGGTTTCGTTACAATGAATTGCCAGATTTTGTGAGGGGTTTGTTGAATTAGGTTAAATCTCCGATTAACCCAAAATTTTAGACTTATGGATTGGGATAAATTTAATCATATCAACGAACACTTCCCTACTTCCCTTCACTTGTTCGCTTAGAAATGTGAGAATTTTTATTGAGCTAATTGATATTAATTGAGAATGAAATGATTTGACTTGGGTTTGACCATAAGACATGTTGTCTTATTTACAACATGTTGAATTATGTTAAATCACAAACCAGGATAAATTTAATTATGTCAATCTACGTTTGGATGAAAGAAACATAGGGTATTTAGAGATGTGTAGTGCTCTGCTGATGACGCTTGTCGGGTAGTTTGGTTTAAGGCTTTCTTGTGAATGTCGGTCAATAGACTTTTTGTAATTAAGTTAATTTGATTTTGTTGGATTGTAGTATCTATCTGTTTCCTTGTGTACTCTTTCACCTTTCTCAATAAAGCTCCGCTTCTTATAAAAAGAAAAAGGTCACCAGATTGTGCTGATAATCATAACTTCTCACATTCTTGTAAGTATTTTCTTCTTTGGTTTAATTTATGATGTATATTTTATTTTTATATGCAGACCGGGAAGTCGAGGCATTTTGGCTACATTGAATTTGAATCTCCAGAGGTGCTAAATCAATTTCAGGACATTTGTGTCTGTAATTTTCATAGGGTTAGTTATTCATTTTAATCACTTCCAGTTTACCCTAAATTTGGATTTTGTGAGCACAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACCTTCTGAAGGTCCACCTAATTCCTAACGAGCACGTTCATCCTAATCTGTAAGTATACTGCTGCTAGATTTTTCTTGACATGGACATAGTTGAATATTTCAACTAATATGGTATTTCGCTTGAATGGTGTCATATTTACAGATGGAAGGGTTTTAACTATCGCTATAAGCCCTTAAACTGGTCTGAACTTGAGCGTAAACAGCATAATAAGGTATCAATTATCAAGCTTGGAAAATTATCTTTTAGATCATAAAAACACTCATCGGTTTTACTTGTTTTACAATAATTTTTCAGGAAAGGACCTTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTAAGAATCATGATTTTTTCTTAAGATGATTATTACATTTTTGCTGTTTGTTTATTTTAAGAAAATAGTTTATTTGACCAATTATAATTTCTAACTAATGAAGTTTTAACCATCACGAGTTAGTTTTTTTTATATCCGTAACGGTTTGGGCCAACTTGCACACACCTCAACTAATGTCACAAGACATATCATCTAACCCTACAACATTTGGATCTCAAGGAAACTTAAAGGAAATTAATTCTTGGGTAGGTGGTCACCATATCACCTCTAAGTTTTCCCAGACCCTCTTGACTGCTAGGCCACTCCTTGAGAGTTATAGATTCAATCCGTGATAGCCATTTTAGGAGTTAACTTTGAGTTTTCTTGACAACCAAATGTTATCAGACGGTTTGTCTCGTGAGAGTAGTCTAGATGTCCGCAAGTTGGCTTGGACACATGGATATCAAAAAAGAAACATATTGTTTTAATATTGGTGTGGATATTCTGGGGGCAGACATGGTTACCTCGGATAGAGTGGAGCGAAACTATGATGTCTTAGTTTCAAAAATAAAAATAATGTTATGGATAGTTCCGAAACAACCAAATATTGGCATGGATAGTAAAGTAAGCACATTCTTCTCATGGACCATTTGTCCATGAGAAGATGTCTCGCATTTTGTCCCAGAATCTTTTGGCATAGTAGCATGTGATGAATAAGTGCTGTTGAGTTTCTGTGGCTGCTTTGCAAATTATACACCAATTTGGAGATAGTGGTGTTTTGGTAATGGTAGCCTCCTTTGAAGCATCTTACCAGTATTAATGACCTTGTTAAGGAGTTCCCGTAGAAAGAACTTGACGTTCGTAGGGAATTTATCTCTCCATATTGCAGTGTGAATTATATAGTAGGAATGATCAGTTGTACCTCCGATATCACTAATAAGGTTAAGAAGATGATTATGAAATAACTTAGGAACGTACACCCAAAAAGAGACATTTGGCCTAGCATGGGAGTACGTCTCTCAGGAGCTCAAATTGACCCATTTCACTTGTTTTATACGATTGGGATTGGCTACTGTGACTGAGAGCACTTCACCTTTAGATGATTTCCATTTGAAATGCTCTTATTTAGACAATTTTAGGAGATGATATTCAGCTAATCCTTTTATCAATTCTTTCAATAAACCATTGCGGTGGTTGAGGTAAAAAATTATAAGTTCAATCTAGTATAGTCACTATAAATTTCCTTGACAACCAAATGTTTTATAGAGTTAGGTAGTTTGTCTCGGGAGAATAGTCAAATTGTGCGTGTGAGCTCAACAAGTATTAATCTGTAGGGCAAACCAAAACTTGATTTGCGGTGCCATTATTTTAGTGGGGCTGTTTGGCTTTGTACTGATTTCTTGAGTGAATAATTTCGTAGTTTAGCCATCCTAGTATGTTGACTCTGGAGAAATTGCAGGTGGGCAGTGACCAACCAGCGCCTAAGAAGATCAAGTTCGATGAAGATTAGAATGAGCGTTTAGTTCATAGAAGCTAAAGTGTTAATGCAGAAAGGGGAAAGGTGAAGAATGATGGGCTGTTGAGCTGTTGCATCTTTCCAGTTTCTTATGCTGATCTCTAAATTTTGATCTTTGAAATTTTGTCAAACGAATTTTATACTATCTTTAGTTTGTATTGCCTTTTATAAAAATGAAAAGGAAAAAAAAAATTGTATTGAAGCTTGTTTATGGCTTACAAATCTGACTCGCAATGATATGAACTGAATGGTAAATTTGAAAGTCGAACCATGTCAGATCTACTA

mRNA sequence

GCCGTCTTCAAATCCTAAACCCTAATGTCCGTTTTATAGTTTTCGCCTTCAAGCTTTCTCCTCACCATTTTAGATTTCGTTCTTCATAAATTTGTAGTTGTTCGTTTGTTCGAGTTCAATGGGGGCTAAGGCGAAGAAAGCTTTGAAGAAGAAACTCAATAAGGCCAGTTCTCTCTCCTCCAAAAAGAAGGAATCTGCAGATTTCTTGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGTACAGAAGCCACTGGAAAGTACTGCTACTGTTCTTTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGAAAAGTTAAGAGATTAAGAATTGCACGAAATAGAAAGACCGGGAAGTCGAGGCATTTTGGCTACATTGAATTTGAATCTCCAGAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACCTTCTGAAGGTCCACCTAATTCCTAACGAGCACGTTCATCCTAATCTATGGAAGGGTTTTAACTATCGCTATAAGCCCTTAAACTGGTCTGAACTTGAGCGTAAACAGCATAATAAGGAAAGGACCTTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTGGGCAGTGACCAACCAGCGCCTAAGAAGATCAAGTTCGATGAAGATTAGAATGAGCGTTTAGTTCATAGAAGCTAAAGTGTTAATGCAGAAAGGGGAAAGGTGAAGAATGATGGGCTGTTGAGCTGTTGCATCTTTCCAGTTTCTTATGCTGATCTCTAAATTTTGATCTTTGAAATTTTGTCAAACGAATTTTATACTATCTTTAGTTTGTATTGCCTTTTATAAAAATGAAAAGGAAAAAAAAAATTGTATTGAAGCTTGTTTATGGCTTACAAATCTGACTCGCAATGATATGAACTGAATGGTAAATTTGAAAGTCGAACCATGTCAGATCTACTA

Coding sequence (CDS)

ATGGGGGCTAAGGCGAAGAAAGCTTTGAAGAAGAAACTCAATAAGGCCAGTTCTCTCTCCTCCAAAAAGAAGGAATCTGCAGATTTCTTGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGTACAGAAGCCACTGGAAAGTACTGCTACTGTTCTTTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGAAAAGTTAAGAGATTAAGAATTGCACGAAATAGAAAGACCGGGAAGTCGAGGCATTTTGGCTACATTGAATTTGAATCTCCAGAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACCTTCTGAAGGTCCACCTAATTCCTAACGAGCACGTTCATCCTAATCTATGGAAGGGTTTTAACTATCGCTATAAGCCCTTAAACTGGTCTGAACTTGAGCGTAAACAGCATAATAAGGAAAGGACCTTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTGGGCAGTGACCAACCAGCGCCTAAGAAGATCAAGTTCGATGAAGATTAG

Protein sequence

MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEHLLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQARQKRIRAAGIDYECPEIVGSDQPAPKKIKFDED
Homology
BLAST of Sed0016970 vs. NCBI nr
Match: XP_008456579.1 (PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo])

HSP 1 Score: 389.0 bits (998), Expect = 2.5e-104
Identity = 194/212 (91.51%), Postives = 202/212 (95.28%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKAKKA+KKKL KA+ LSS KKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 LLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQAR 180
           +LKVHLI  EHVHP LWKGFNYR+ PLNWSELERKQHNKERTL EH+KLV+RILKRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSDQPAPKKIKFDED 213
           QKRIRAAGIDYECPEIVGS QP PKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

BLAST of Sed0016970 vs. NCBI nr
Match: XP_022134394.1 (uncharacterized RNA-binding protein C1827.05c [Momordica charantia])

HSP 1 Score: 388.3 bits (996), Expect = 4.3e-104
Identity = 195/211 (92.42%), Postives = 202/211 (95.73%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKAKKA+KKKLNKA+SL S+KKESADFLPL GGPGRKLP QKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 LLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQAR 180
           +LKVHLIP EHVHP LWKGFNYRYKPLN  ELERKQHNKERTL EHRKLVERILKRDQAR
Sbjct: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSDQPAPKKIKFDE 212
           QKRIRAAGI+YECPEIVGS QPAPKKIKFDE
Sbjct: 181 QKRIRAAGIEYECPEIVGSVQPAPKKIKFDE 211

BLAST of Sed0016970 vs. NCBI nr
Match: XP_022922397.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata])

HSP 1 Score: 388.3 bits (996), Expect = 4.3e-104
Identity = 194/212 (91.51%), Postives = 202/212 (95.28%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKAKKA+KKKLNKA+SL S KKESADFLPLEGGPGRKLP QKPLESTATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGYIEF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 LLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQAR 180
           +LKVHLI  EHVHP LWKGFNYR+ PLNWSELERK+HNKERTLGEHRKLVERILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSDQPAPKKIKFDED 213
           QKRIRAAGIDYECPEIVGS QP PKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

BLAST of Sed0016970 vs. NCBI nr
Match: XP_022993750.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima])

HSP 1 Score: 387.9 bits (995), Expect = 5.7e-104
Identity = 194/212 (91.51%), Postives = 203/212 (95.75%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKAKKA+KKKL+KA+S  S KKESADFLPLEGGPGRKLP QKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSSLSDKKESADFLPLEGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKR+RIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRIRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 LLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQAR 180
           LLKVHLI  EHVHP LWKGFNYR+KPL+WSELERKQHNKERTL EH+KLVERILKRDQAR
Sbjct: 121 LLKVHLISPEHVHPKLWKGFNYRHKPLDWSELERKQHNKERTLDEHKKLVERILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSDQPAPKKIKFDED 213
           +KRIRAAGIDYECPEIVGS QPAPKKIKFDED
Sbjct: 181 KKRIRAAGIDYECPEIVGSVQPAPKKIKFDED 212

BLAST of Sed0016970 vs. NCBI nr
Match: XP_038885284.1 (MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida] >XP_038885285.1 MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida])

HSP 1 Score: 386.3 bits (991), Expect = 1.7e-103
Identity = 192/212 (90.57%), Postives = 202/212 (95.28%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKAKKA+KKKL+KA+SLS  K+ESADFLPLEGGPGRKLP QKPLESTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSLSCHKQESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 LLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQAR 180
           +LKVHLI  EHVHP LWKGFNYR+ PLNWSELERKQHNKERTL EH+KLV+RI+KRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRIMKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSDQPAPKKIKFDED 213
           QKRIRAAGIDYECPEIVGS QP PKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPIPKKIKFDED 212

BLAST of Sed0016970 vs. ExPASy Swiss-Prot
Match: O74978 (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1827.05c PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.0e-32
Identity = 67/155 (43.23%), Postives = 106/155 (68.39%), Query Frame = 0

Query: 38  RKLPVQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYI 97
           +K+   K L+    VLY+GR+PHGF+EK+M  +F QFG V RLR++RNRKTG S+H+ +I
Sbjct: 92  KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151

Query: 98  EFESPEVAKIVADSMHNYLLYEHLLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQH 157
           EFES +VA +VA++MHNYLLY  LL+  +IP + VH N++KG +  +K +  + + R QH
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQH 211

Query: 158 NKERTLGEHRKLVERILKRDQARQKRIRAAGIDYE 193
            K  +  +  KL+ R  ++ + ++++++  GI  E
Sbjct: 212 EKPLSKEKADKLITRHNRKLKLKKRKLKELGITLE 246

BLAST of Sed0016970 vs. ExPASy Swiss-Prot
Match: Q6GL69 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis OX=8364 GN=nifk PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.9e-28
Identity = 62/143 (43.36%), Postives = 93/143 (65.03%), Query Frame = 0

Query: 52  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADS 111
           V+YIG IP   +E ++  +F QFG V RLR++R++KTG S+ + Y+EFE  EVAKIVAD+
Sbjct: 42  VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101

Query: 112 MHNYLLYEHLLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVE 171
           M+NYL  E LLK   +P E VHP L+ G   +++      + R  +NK R+  E +K+ +
Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAEQKKMTQ 161

Query: 172 RILKRDQARQKRIRAAGIDYECP 195
           R+L ++   +KR+   GIDY+ P
Sbjct: 162 RMLSKENKVRKRLAEKGIDYDFP 182

BLAST of Sed0016970 vs. ExPASy Swiss-Prot
Match: Q8JIY8 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=nifk PE=2 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 9.0e-28
Identity = 62/143 (43.36%), Postives = 98/143 (68.53%), Query Frame = 0

Query: 52  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADS 111
           VLY+G +P G FE +++ +F QFGKV RLR++R++KTG S+ +G++EFE  EVAKIVA++
Sbjct: 46  VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAET 105

Query: 112 MHNYLLYEHLLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVE 171
           M+NYL+ E ++K H+IP E VH  L+ G    +K   +  + R  +NK  T  + +K+  
Sbjct: 106 MNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTR--YNKTHTEDDVKKVGT 165

Query: 172 RILKRDQARQKRIRAAGIDYECP 195
           ++L ++   +KR+ A GIDY+ P
Sbjct: 166 KLLSKESKLRKRLAAKGIDYDFP 186

BLAST of Sed0016970 vs. ExPASy Swiss-Prot
Match: Q3SZM1 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=NIFK PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-27
Identity = 60/155 (38.71%), Postives = 102/155 (65.81%), Query Frame = 0

Query: 43  QKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESP 102
           Q+  + T  V+Y+G +P   +E ++  +F QFG V R R++R++KTG S+ +G++EFES 
Sbjct: 37  QEKQKPTPGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESE 96

Query: 103 EVAKIVADSMHNYLLYEHLLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERT 162
           +VAKI A++M+NYL  E LLK H IP E VH  L++ ++  +K  ++  +  K++N+ R+
Sbjct: 97  DVAKIAAETMNNYLFGERLLKCHFIPPEKVHEELFREWHMPFKRPSYPAV--KRYNQNRS 156

Query: 163 LGEHRKLVERILKRDQARQKRIRAAGIDYECPEIV 198
           L +  ++ ER  K+++  +KR+   GIDY  P +V
Sbjct: 157 LVQKLRMEERFKKKEKLLRKRLAKKGIDYNFPSLV 189

BLAST of Sed0016970 vs. ExPASy Swiss-Prot
Match: Q7SYS2 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=8355 GN=nifk PE=2 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-26
Identity = 61/146 (41.78%), Postives = 93/146 (63.70%), Query Frame = 0

Query: 49  TATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIV 108
           T  V+YIG IP    E +++ +F QFG V RLR++R++KTG S+ + Y+E+E  EVAKIV
Sbjct: 39  TPGVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIV 98

Query: 109 ADSMHNYLLYEHLLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRK 168
           AD+M+NYL  E LLK   +  E VHP L+ G N R++      + R  +N +R   E +K
Sbjct: 99  ADTMNNYLFCERLLKCEFVTPEKVHPRLFIGCNTRFRKPTKPAVTR--YNSKRNKEEVKK 158

Query: 169 LVERILKRDQARQKRIRAAGIDYECP 195
           + +R++ ++   +KR+   GIDY+ P
Sbjct: 159 MTQRMISKEYKLRKRLAEKGIDYDFP 182

BLAST of Sed0016970 vs. ExPASy TrEMBL
Match: A0A1S3C4U7 (uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC103496493 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.2e-104
Identity = 194/212 (91.51%), Postives = 202/212 (95.28%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKAKKA+KKKL KA+ LSS KKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 LLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQAR 180
           +LKVHLI  EHVHP LWKGFNYR+ PLNWSELERKQHNKERTL EH+KLV+RILKRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSDQPAPKKIKFDED 213
           QKRIRAAGIDYECPEIVGS QP PKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

BLAST of Sed0016970 vs. ExPASy TrEMBL
Match: A0A6J1BYN0 (uncharacterized RNA-binding protein C1827.05c OS=Momordica charantia OX=3673 GN=LOC111006666 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.1e-104
Identity = 195/211 (92.42%), Postives = 202/211 (95.73%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKAKKA+KKKLNKA+SL S+KKESADFLPL GGPGRKLP QKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 LLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQAR 180
           +LKVHLIP EHVHP LWKGFNYRYKPLN  ELERKQHNKERTL EHRKLVERILKRDQAR
Sbjct: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSDQPAPKKIKFDE 212
           QKRIRAAGI+YECPEIVGS QPAPKKIKFDE
Sbjct: 181 QKRIRAAGIEYECPEIVGSVQPAPKKIKFDE 211

BLAST of Sed0016970 vs. ExPASy TrEMBL
Match: A0A6J1E350 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662 GN=LOC111430401 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.1e-104
Identity = 194/212 (91.51%), Postives = 202/212 (95.28%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKAKKA+KKKLNKA+SL S KKESADFLPLEGGPGRKLP QKPLESTATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKSRHFGYIEF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 LLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQAR 180
           +LKVHLI  EHVHP LWKGFNYR+ PLNWSELERK+HNKERTLGEHRKLVERILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSDQPAPKKIKFDED 213
           QKRIRAAGIDYECPEIVGS QP PKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

BLAST of Sed0016970 vs. ExPASy TrEMBL
Match: A0A6J1JZE0 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 GN=LOC111489660 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.7e-104
Identity = 194/212 (91.51%), Postives = 203/212 (95.75%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKAKKA+KKKL+KA+S  S KKESADFLPLEGGPGRKLP QKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSSLSDKKESADFLPLEGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKR+RIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRIRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 LLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQAR 180
           LLKVHLI  EHVHP LWKGFNYR+KPL+WSELERKQHNKERTL EH+KLVERILKRDQAR
Sbjct: 121 LLKVHLISPEHVHPKLWKGFNYRHKPLDWSELERKQHNKERTLDEHKKLVERILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSDQPAPKKIKFDED 213
           +KRIRAAGIDYECPEIVGS QPAPKKIKFDED
Sbjct: 181 KKRIRAAGIDYECPEIVGSVQPAPKKIKFDED 212

BLAST of Sed0016970 vs. ExPASy TrEMBL
Match: A0A0A0KCE3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G044030 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.0e-103
Identity = 190/212 (89.62%), Postives = 201/212 (94.81%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNKASSLSSKKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKA+KA+KKKLNKA+ LSS KKESADFLPLEGGPGRKL VQKPLESTATVLYIGRIPH
Sbjct: 74  MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 133

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARN+KTGKS+HFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 134 GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 193

Query: 121 LLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVERILKRDQAR 180
           +LKVHLI  EHVHP LWKGFNYR++PLNWSELERK HNKERTL EH+KLV+RILKRDQAR
Sbjct: 194 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 253

Query: 181 QKRIRAAGIDYECPEIVGSDQPAPKKIKFDED 213
           QKRIRAAGIDYECPEIVG  QP PKKIKFDED
Sbjct: 254 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 285

BLAST of Sed0016970 vs. TAIR 10
Match: AT5G04600.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 274.6 bits (701), Expect = 6.5e-74
Identity = 140/221 (63.35%), Postives = 179/221 (81.00%), Query Frame = 0

Query: 1   MGAKAKKALKKKLNK-ASSLSSKK-------KESADFLPLEGGPGRKLPV-QKPLESTAT 60
           MGAKAKKALKK + K A+S SS +       K SADFLPLEGGP RK PV   PL++ AT
Sbjct: 1   MGAKAKKALKKNMKKVAASASSSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKAT 60

Query: 61  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVAKIVADS 120
           VLYIGRIPHGF+E E+E FF QFG VKR+R+ARN+KTGKS+HFG+I+FE PEVA+I A +
Sbjct: 61  VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120

Query: 121 MHNYLLYEHLLKVHLIPNEHVHPNLWKGFNYRYKPLNWSELERKQHNKERTLGEHRKLVE 180
           M++YLL EH+LKVH+I  E+V PNLW+GF   +KP++  ++ER+Q NKERTL EHRK+++
Sbjct: 121 MNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQ 180

Query: 181 RILKRDQARQKRIRAAGIDYECPEIVGSDQPAPKKIKFDED 213
           +I+K+DQ R+KRI AAGI+YECPE+VG+ QP PK+IKF E+
Sbjct: 181 KIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSEE 221

BLAST of Sed0016970 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.9e-07
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 46  LESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVA 105
           ++S    L+IG I     E+ ++ +F  FG+V    I ++R TG++R FG++ F  P VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 106 KIVADSMHN 115
           +IV    HN
Sbjct: 61  EIVITEKHN 69

BLAST of Sed0016970 vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.9e-07
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 46  LESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEFESPEVA 105
           ++S    L+IG I     E+ ++ +F  FG+V    I ++R TG++R FG++ F  P VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 106 KIVADSMHN 115
           +IV    HN
Sbjct: 61  EIVITEKHN 69

BLAST of Sed0016970 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 41  PVQKPLESTATV--LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIE 100
           P ++ +ES + +  L+IG I     E+ ++ +FG++G +    I R+R TG++R FG+I 
Sbjct: 3   PEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIV 62

Query: 101 FESPEVAKIVADSMH 114
           F  P VA+ V    H
Sbjct: 63  FADPSVAERVIMDKH 77

BLAST of Sed0016970 vs. TAIR 10
Match: AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 48.9 bits (115), Expect = 5.8e-06
Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = 0

Query: 42  VQKPLESTATV--LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNRKTGKSRHFGYIEF 101
           +++ +ES + +  L+IG I     E+ ++ +FG++G +    I R+R TG++R FG+I F
Sbjct: 1   MEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 60

Query: 102 ESPEVAKIVADSMH 114
             P VA+ V    H
Sbjct: 61  ADPSVAERVIMDKH 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008456579.12.5e-10491.51PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo][more]
XP_022134394.14.3e-10492.42uncharacterized RNA-binding protein C1827.05c [Momordica charantia][more]
XP_022922397.14.3e-10491.51uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata][more]
XP_022993750.15.7e-10491.51uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima][more]
XP_038885284.11.7e-10390.57MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida] >XP_03... [more]
Match NameE-valueIdentityDescription
O749786.0e-3243.23Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (stra... [more]
Q6GL696.9e-2843.36MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis... [more]
Q8JIY89.0e-2843.36MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=... [more]
Q3SZM12.6e-2738.71MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=N... [more]
Q7SYS21.7e-2641.78MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=... [more]
Match NameE-valueIdentityDescription
A0A1S3C4U71.2e-10491.51uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A6J1BYN02.1e-10492.42uncharacterized RNA-binding protein C1827.05c OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1E3502.1e-10491.51uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1JZE02.7e-10491.51uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 G... [more]
A0A0A0KCE34.0e-10389.62RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G044030 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT5G04600.16.5e-7463.35RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G07810.16.9e-0736.23RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G07810.26.9e-0736.23RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G26650.12.6e-0634.67RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G26650.25.8e-0633.78RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 52..125
e-value: 3.7E-19
score: 79.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 53..121
e-value: 2.1E-13
score: 49.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 51..129
score: 14.709315
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..131
e-value: 7.8E-21
score: 76.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availablePANTHERPTHR46754MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEINcoord: 1..212
NoneNo IPR availablePANTHERPTHR46754:SF9SUBFAMILY NOT NAMEDcoord: 1..212
NoneNo IPR availableCDDcd12307RRM_NIFK_likecoord: 52..125
e-value: 2.33444E-42
score: 135.78
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 35..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0016970.1Sed0016970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding