Sed0016955 (gene) Chayote v1

Overview
NameSed0016955
Typegene
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S12
LocationLG09: 37884726 .. 37887756 (+)
RNA-Seq ExpressionSed0016955
SyntenySed0016955
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCCATTTATACAGCAGCAGAAACTTTCATAAAACCCTAATCTCTTCACAAACTCCCTCTTTCAGTCGTTTTGCCGCCGCCGCCGCCATTTCCCAATCTCCGGTAAATCTCTCTCTCAATCTCCGGCCAGAAATTCTCGTTCTTCCGACCATGGCCATTGTTATCTCTTCCTTTTTATCATAACTTCATTTTTTTTGAAACATTTTCTCATAATTTCATTGACAATACATTAGATTGTACCTAATTCGATTTCGCAAATAGAAAGATCCGTCTCCATTTTCATTCAATTGTCTGTTATGGGTTTCATTTGAATTCCTTAGCTAATGATTTTGTTTCTGCTACAGGAAGGTGAAACAACTTCGAATCCAGAAGAAAAATGTCAGGGTGAGTGGAAACTTTTTTTTAACAATTTTTAACTATCTCGGTTATTTTCGTTTATTTTTTGTGTTTGATCGCTTCAATGTATTAGATATTCTAGAATATGAATTAGAATGAATTAAGGTAATCTTGAAATTATATTTTTTGGTCTTTGGATCATAAAAAAATATAGAGCTTTGAAGAAACATTTATCTGTTTATACGTGGGGATTTTATGATTCTTTGATAGTAAACTACTGTGGCCTCGATTGATAACCATTTGATTTTTTGTTTTTGAAATTTAAGCTTATTTTATTCAAATTTCTTATTATGTGTTCATTTTTTCTTAGGAAAGTATGTGAATCATAGCCAAATTTCAAAAACTAAAACAAACGTATGGAAGCTATTTTTTTTTTTTTTTTTTCTACATTTTGGTTTGATTTCTAAGAATATAGGTTATATGTAGGCATTTATGTAAGAAAAAACATATGATAAGATAGTCTTTTATCGACTTAAATTTCAAAAACTAAAAATAAAATGATTACCAAACGAAACCTAAACTATTCAATTTAGGTTTTTTGTAAGTGATTAGGTTTGTGACTATGTTATTGCCTTAACTATGCCTTAGAGGAGTATTATAATGATATCTTTTAACATGATTTCTTTTGCAGTGATGATGTTGCAGTTCCAGTCGTGGCTGAGGCTCCCGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGGCTTCATGAGAGTGCGAAAGCTATTGAGAAGCACGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTGAAACTAGTCAAAGCACTTTGTGCTGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCCGGCGTAAGTGTTTAATTTTATCATACTCATACATATTACTTAAGGGTGTGTTTGTGCCCTCGTTTATGTAAACGGCTGTGTTGGTTATAATAACCCAACCGATGTTTGCCCCACCGTTTATTACAAACGGTGGTTACCTAAACCTGCGTGTTCGTTTATCTAAACCTACGTGTCCGTTTATCTACACCTTACATATATTACTTTTTGTTACATAACCAGCCCCTCAAACACCGTTTATAATAACTCACCGTTTATCATAACCTTCCGTCCATAATAACCAAACAGGTGTTCACCCTAATATTCTATCAGTAGATAAAATTGATTACCTTTTTCTTGTACAATTGTTTATAAGTAGATAAAATTGATTACCTTTTAGTTCCACCCCCTTAAGGACAGGACTTTCTATGTTGAATTTAACCACCCACTACAAATTAGTCAAATAAATTAAAATAGCAAATTCGAATAAGAAATAATAGAAATGATTTGGAAAATTTGTATTTTGCTTGGAAATTGTGATGGAGACTTGGAGGTAACATCATCATCTTCATTGGCTGGTTTGGCTATCATTTTTACTCGTTTTTTCTTCATCACTGGCACACTATTATTTACTATACTATACTCATTATCTTGCTTTACGTTGTATATTTATATATATATATATATATGTATGTATGTATGTATTTATGTATGTATGTATTTATGTATGTATGTATGTATGTATATATGATGTATATTTTTCTCACCTAAAACTTTTGTTTTGCATTCTGAACGGTTGTTCAAGTCTGTCTATATTTATAGCTGTTTAAATGCAAAAATGCATTAAACTATAAACTAATTATGATTAACATGTAAATCTTTGTGTTTTTGTTTTAGAGAGAGCTTAGTAGTTCTCTCCTCAAGGTTCCAGGTTTAAGAGTCACTTGTGATTTTAATTTGTAGACATCGCTCGTGTCTCCATTCCTTCGATGTCTCCTGGTACCTAGTCTAGAGACGGACCTGGTTACCCTGGGTATAGTGGAGTGAAACTCATGATTTTTCATTTTTAAAAAAATAGTAAAATCCTTGGATGATTTTTGGGTTTGGGCCTTGGGATTGGTCTGGACGCCCTTAGGTATAATATTACTATTTATTGTGGCGAAGCTTCGATTCTCTCATTAAGAAAAACGCAATTCCTGTCACATTGGAGCTCAGGATAATTAATTTTCTTCATATTTGGTGTAATGCCAGCTATGCAAGATTGATTCTGAAGGAAAGGCAAGGAAAGTTGTTGGCTGTTCTTGTGTTGTTGTTAAGGTACAACTGTGCTGCCATTCACTCTCTTCAAATATACTGTTCCTTTTCTTTGAGAAGATTCATGTTTACTTGTTATCCTCAGGATTTCGGAGAGGATCACGAGGCGCTGCACATCGTCCAGAAGCACGTGAGTTCGAATTGATTATATTTCAATGGTGTCTGCTGCCTCACTTAGAAAAGTTTTTGATCTTTAGTTATGTTTAGATTTTGTGCACTGTTACCTGTACCCTATAATGTGTCTTTTTTTCTTGGTTTTTGATTGGAAAAACTGGTTTTTATCTTATGAGGCCATTGATGTGGAGCTCATTATCATCATTCTGGCAAATTGAACAATTTTATTAATCAAGAGTTTCCTTGCCATGGGAAAAGTGGAAATGATATTTTTCAGCCCTGAATGTTAAATTTTTATTGACACAAA

mRNA sequence

AGCCCATTTATACAGCAGCAGAAACTTTCATAAAACCCTAATCTCTTCACAAACTCCCTCTTTCAGTCGTTTTGCCGCCGCCGCCGCCATTTCCCAATCTCCGGAAGGTGAAACAACTTCGAATCCAGAAGAAAAATGTCAGGTGATGATGTTGCAGTTCCAGTCGTGGCTGAGGCTCCCGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGGCTTCATGAGAGTGCGAAAGCTATTGAGAAGCACGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTGAAACTAGTCAAAGCACTTTGTGCTGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCCGGCCTATGCAAGATTGATTCTGAAGGAAAGGCAAGGAAAGTTGTTGGCTGTTCTTGTGTTGTTGTTAAGGATTTCGGAGAGGATCACGAGGCGCTGCACATCGTCCAGAAGCACGTGAGTTCGAATTGATTATATTTCAATGGTGTCTGCTGCCTCACTTAGAAAAGTTTTTGATCTTTAGTTATGTTTAGATTTTGTGCACTGTTACCTGTACCCTATAATGTGTCTTTTTTTCTTGGTTTTTGATTGGAAAAACTGGTTTTTATCTTATGAGGCCATTGATGTGGAGCTCATTATCATCATTCTGGCAAATTGAACAATTTTATTAATCAAGAGTTTCCTTGCCATGGGAAAAGTGGAAATGATATTTTTCAGCCCTGAATGTTAAATTTTTATTGACACAAA

Coding sequence (CDS)

ATGTCAGGTGATGATGTTGCAGTTCCAGTCGTGGCTGAGGCTCCCGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGGCTTCATGAGAGTGCGAAAGCTATTGAGAAGCACGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTGAAACTAGTCAAAGCACTTTGTGCTGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCCGGCCTATGCAAGATTGATTCTGAAGGAAAGGCAAGGAAAGTTGTTGGCTGTTCTTGTGTTGTTGTTAAGGATTTCGGAGAGGATCACGAGGCGCTGCACATCGTCCAGAAGCACGTGAGTTCGAATTGA

Protein sequence

MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Homology
[Close]
BLAST of Sed0016955 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata] >KAG6575626.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014180.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.6 bits (701), Expect = 4.7e-70
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS D+VA  VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 1   MSADEVA--VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSSN 143
           VVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Sed0016955 vs. NCBI nr
Match: XP_038896811.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS D+VA  VVAEAP PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 1   MSADEVA--VVAEAPVPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSSN 143
           VVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Sed0016955 vs. NCBI nr
Match: XP_022991483.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS D+V   VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 1   MSADEVT--VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSSN 143
           VVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Sed0016955 vs. NCBI nr
Match: XP_023548009.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548011.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548012.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023548013.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS D+VA  VVAE PAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 1   MSADEVA--VVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSSN 143
           VVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Sed0016955 vs. NCBI nr
Match: XP_004147008.1 (40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >XP_031736838.1 40S ribosomal protein S12 [Cucumis sativus] >KAA0045670.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >KGN61872.1 hypothetical protein Csa_006022 [Cucumis sativus] >TYJ99613.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.0e-69
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS D+ A  VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 1   MSADEGA--VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSSN 143
           VVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Sed0016955 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-56
Identity = 107/140 (76.43%), Postives = 125/140 (89.29%), Query Frame = 0 

Query: 4   DDVAVPVVA--EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 63
           ++   PVVA  EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLC
Sbjct: 3   EEAPAPVVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLC 62

Query: 64  VLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 123
           VL EDC+QPDYVKLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+V
Sbjct: 63  VLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIV 122

Query: 124 VKDFGEDHEALHIVQKHVSS 142
           VKD+GE+ E L+IVQ++V S
Sbjct: 123 VKDYGEESEGLNIVQQYVKS 142

[Close]
BLAST of Sed0016955 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-53
Identity = 105/144 (72.92%), Postives = 122/144 (84.72%), Query Frame = 0 

Query: 1   MSGDD-VAVPVVAE-APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGD+ VA PVV   A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 143
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]
BLAST of Sed0016955 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 8.6e-51
Identity = 103/144 (71.53%), Postives = 116/144 (80.56%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPA---PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHA 60
           MSGD+ A PVV   P     A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  
Sbjct: 1   MSGDE-AAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRV 60

Query: 61  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGC 120
           AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGC
Sbjct: 61  AQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 120

Query: 121 SCVVVKDFGEDHEALHIVQKHVSS 142
           SC+VVKDFGE+  AL IV KH++S
Sbjct: 121 SCLVVKDFGEETTALSIVNKHIAS 143

[Close]
BLAST of Sed0016955 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.4e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0 

Query: 18  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 77
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 78  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 137
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 138 H 139
           +
Sbjct: 127 Y 127

[Close]
BLAST of Sed0016955 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 5.4e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0 

Query: 18  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 77
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 78  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 137
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 138 H 139
           +
Sbjct: 127 Y 127

[Close]
BLAST of Sed0016955 vs. ExPASy TrEMBL
Match: A0A6J1GQC3 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.3e-70
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS D+VA  VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 1   MSADEVA--VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSSN 143
           VVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Sed0016955 vs. ExPASy TrEMBL
Match: A0A6J1JWC7 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.6e-70
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS D+V   VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 1   MSADEVT--VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSSN 143
           VVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Sed0016955 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS D+ A  VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 1   MSADEGA--VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSSN 143
           VVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Sed0016955 vs. ExPASy TrEMBL
Match: A0A0A0LM61 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS D+ A  VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 1   MSADEGA--VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSSN 143
           VVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Sed0016955 vs. ExPASy TrEMBL
Match: A0A0A0KA08 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 136/142 (95.77%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60
           MS D+VA  VVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQL
Sbjct: 1   MSADEVA--VVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQL 60

Query: 61  CVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120
           CVLGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV
Sbjct: 61  CVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCV 120

Query: 121 VVKDFGEDHEALHIVQKHVSSN 143
           VVKDFGEDHEALHIVQKHVSSN
Sbjct: 121 VVKDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of Sed0016955 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-54
Identity = 105/144 (72.92%), Postives = 122/144 (84.72%), Query Frame = 0 

Query: 1   MSGDD-VAVPVVAE-APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGD+ VA PVV   A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 143
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]
BLAST of Sed0016955 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-54
Identity = 105/144 (72.92%), Postives = 122/144 (84.72%), Query Frame = 0 

Query: 1   MSGDD-VAVPVVAE-APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGD+ VA PVV   A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 143
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]
BLAST of Sed0016955 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-54
Identity = 105/144 (72.92%), Postives = 122/144 (84.72%), Query Frame = 0 

Query: 1   MSGDD-VAVPVVAE-APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGD+ VA PVV   A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 143
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]
BLAST of Sed0016955 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.1 bits (510), Expect = 6.1e-52
Identity = 103/144 (71.53%), Postives = 116/144 (80.56%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPA---PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHA 60
           MSGD+ A PVV   P     A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  
Sbjct: 1   MSGDE-AAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRV 60

Query: 61  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGC 120
           AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGC
Sbjct: 61  AQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 120

Query: 121 SCVVVKDFGEDHEALHIVQKHVSS 142
           SC+VVKDFGE+  AL IV KH++S
Sbjct: 121 SCLVVKDFGEETTALSIVNKHIAS 143

[Close]
BLAST of Sed0016955 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.1 bits (510), Expect = 6.1e-52
Identity = 103/144 (71.53%), Postives = 116/144 (80.56%), Query Frame = 0 

Query: 1   MSGDDVAVPVVAEAPA---PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHA 60
           MSGD+ A PVV   P     A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  
Sbjct: 1   MSGDE-AAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRV 60

Query: 61  AQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGC 120
           AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGC
Sbjct: 61  AQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 120

Query: 121 SCVVVKDFGEDHEALHIVQKHVSS 142
           SC+VVKDFGE+  AL IV KH++S
Sbjct: 121 SCLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:
BLAST of Sed0016955 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022954225.14.7e-7097.1840S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma... [more]
XP_038896811.11.4e-6996.4840S ribosomal protein S12-like [Benincasa hispida][more]
XP_022991483.11.4e-6996.4840S ribosomal protein S12-like [Cucurbita maxima][more]
XP_023548009.11.4e-6996.4840S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ... [more]
XP_004147008.13.0e-6996.4840S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribos... [more]
BLAST of Sed0016955 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XHS01.1e-5676.4340S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1[more]
Q9SKZ32.4e-5372.9240S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1[more]
Q9S9P18.6e-5171.5340S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1[more]
Q76I815.4e-3758.6840S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1[more]
P253985.4e-3758.6840S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3[more]
BLAST of Sed0016955 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GQC32.3e-7097.1840S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=... [more]
A0A6J1JWC76.6e-7096.4840S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1[more]
A0A5D3BJY51.5e-6996.4840S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0LM611.5e-6996.4840S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1[more]
A0A0A0KA081.5e-6995.7740S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1[more]
BLAST of Sed0016955 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G32060.11.7e-5472.92Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT2G32060.31.7e-5472.92Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT2G32060.21.7e-5472.92Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G15930.26.1e-5271.53Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G15930.16.1e-5271.53Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 32..45
score: 54.55
coord: 112..125
score: 81.17
coord: 46..62
score: 48.13
coord: 87..108
score: 57.85
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 9..141
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 28..46
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 10..142
e-value: 1.4E-54
score: 185.0
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 21..140
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 28..121
e-value: 8.5E-28
score: 95.9
NoneNo IPR availablePANTHERPTHR11843:SF2040S RIBOSOMAL PROTEIN S12coord: 9..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0016955.1Sed0016955.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome