Sed0016947 (gene) Chayote v1

Overview


Name	Sed0016947
Type	gene
Organism	Sechium edule (Chayote v1)
Description	exosome complex component RRP41-like
Location	LG05: 39529226 .. 39534505 (+)
RNA-Seq Expression	Sed0016947
Synteny	Sed0016947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAACCTCAAATATATAAGAAGAGCTTCGCTAAAAGTGCACCGGCCGGCCTCTCCCGCTTCCAAGGTTCAGTTTTTCAATCTTGGGTTACTCGGATTGTTTCCAATCTCTTTGAAGAAACCATTCTTTGGAGTTTAAAGCCACCATCGTGGGGGGTTTTCTGTTCATTTGTCCCGACGGCGGAAGGTAACAATGGTTCTTTTTCTTAGTGTCTTGAACCCTAAATTCTGATTTGGGTATCCACCGAAGGGAATTTTCTGGGCATTATTTGATACGAAATAGCTAATGAAGGGCGTTAATGTGTGCCAAATCTCAGGAAATTTTGTGGGTGAGCTTCCAAAGTAATCGACCCATTGACATTCCGAAATGGCCAAAAAAGCGACACCAGCTACGACTACGTATTCTCCGTCTCCAACTACCCTCAAAACCAGACCACCCATCTTCAGAACCGACGACGTCGACTGGGTTCGCCCAGATGGCCGAGCCTTCCACCAGTGCCGTCCTGCTTGTATGTCGTTTGATGCATCTTTAGCTCTGGTTTCTCATTGCTACTTGTCTGAGCTCTGTTTTTGTTTGCTTTTGTTATCTTTTCCTGATTACTTGTCTATGGACTTGTGCATCTTAGTTTGTTAATGGGGATTTTCCTGGTTATCGGTCTTATGGCTGCCATTCCTTTTCACTTTTGGAAGAAAGGGAGTGACAAACTGCTAATGAATTTTCCCAGTCTTGTTCATTTCTTGATGGTGAAATGGGTCGATGCCATGGTCGTGTATAAATGAGTGTTGACTGGGATGTAAGAAATAACCCACTTTAAAATGGGTTGTCTCGATATGTGTGGTACGGTCGTCGAAGGCTTAGAGTTTGAAAGTATGCTCCTCTCAAGGTCTTAGGTTCGTGAGCTATCCTTCGGGTTTCCATTCCTTTGATGTCTACTAGTGCTTGACCTTTGGATGAATGTGATTACCCCGGGTGTTATGAAGCAAAGTTTCGATTTCCTGGTTTCCAAAAAAAAAGGCAGTCTCAACATTGATGTCTTAGTGAAAGGCTTATCCTTGGATGGTTCAGTGCAAGTTGTAGTTGATCATGGAGTCCTCGACTTCAGAATGAGGATTTTGAATATATGTTACTTGGTGGTTTTTTCCGGTTTTGTTGTTGATTTCATACTGAAGTATTGTTATCTTTATAGAAACTAAAGTGGGCATTTAACATGCAGTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATCGTTTCTGTGTAAGTGGTTCTCTCTGTGATTTCTAGGTTTCTCTTGGCTGATGAGAGTTTGATTACCAATGTGAAACCTATGTCGACTACGCATCTGATAAACTTGCTGTTCCTGTACTTTTATCATTTAAATCTTTTGCTTCTTTATTGCATTGCATGAATTATGTGTTTCCCTTTTTTTTTTACTCAAATTCTGCATTCCTTGCATCAGATTTGGCCCTAGAGAAAGTAAGAAGGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTCCACTCCAGTTCGAGGACAGGTGTGAAAGATACCACCCTTGTTATATTAAATATAGTTTATAGTGTTATAATTGTGATTATCTTATTTTGTTTGAACTTTGTATTACTAGGGATCAGAAAACAAGGAGTTCTCCTCGATGCTACATAAAGCTTTGGAAGGAGCAATAATATTGGAGACATTTCCCAAGACAACCGTGGATGTATTTGCCTTGGTGTTGGAGTCTGGAGGCAGTAAGTTTAGATGGATAATAATTGTCTGGAATTGGATGTCCCTAAGGGGCGGCACAATGGTTGAAGACTTGGGCTTTGAGGGTATGCTCCCCTCAAGATCCTGAGTTCGAGACTCAGCTGTGACATTATTCCTTCGATGTCTCCCGGTACCTGGCCTAGGGACGGGCGTGGTTACTCTTGTTTAAAAAAAAAAGTCTGGAATTGGATATTGATTGATAGACATGAACCAGCATTCTTTCTTAGTCTCACGTGGGATGGGACTTGAGAGTTCCAACGATTTGTGATTCAATTATGAAGTAGAGCCAACGAAGACCTTTTTGAAAAGATTCAAAAGTATCATGTTCTATTCTTGTGATGCTAAAGAAACATCAGTTGCCAGATCTTGAATTTCTTTTTGAAACATGGTCCATTAACATAGGTGCAGAATGTTGGTGATTCTTGTTGGATCACTTAACTATTTCTTAGCAATAGCTTGCAATCAAGGTATCTTTGATGTGAATTGTGTGACTGCTGGCATCACAAAGCTGACTAGTTTCTCCTCACCTATTTGCAGCGCCTTCAGATTTTATACTTTTTATGTACACTTGAAGCATGCAAGTTTTATTACCTATTCTCTGGATTGATATTTTGCTGTTGCAGGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCATGTGAACATTCTTAACTCTCCTGTTTCTAGTGTAATTAGTTTCTATTTCTCTTTTTGAAACAAGCTTTTTGAGTGCACAGGATTGTGTTGAGTGCAACATGCATTTAATTTATTAGCCAAGCATTTTTAAAAATCGAAGCTTGCCATACTTTAGATTCATTGAAATATTGACATCGGTTGTGGTGTGGTATAAAGTCTCTCCCATTTTTCATGATTATAGGTTTGATGTACTCATTAGTAGTTGGATTTCCTTTATGTAATTGGCTACCTAATGAAATTGTTTCTTATAAAAAAAAAAAGCTTTTTGAGTGCACATGGTTTTGAATATATATTGGTGTTGGGTTGCCGATAATTGAATCCTAAAAGGAGATTCTAGTATCGTGTTCTTTGTGTTTCCTTCTGCAGTCGAGGAAGATATATTTGTGTGCTATTAAATGATCTTGGGATGTCGTAAAATTTGTTTCCTGTTTTTATTACCTTTTCGTTTCCAATATTTGATGCACGGATGATTGTTTATTATTATATGATGTCCATGTAAGTCATGAATTAACTAGTCTGATGAGTCTACCATTTAAAGTTCTGATACAATTACCATCATATGTTAACTAGAGCTGCTTTGGTAAGAATCTTCTTATTGATCCAATGTTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATTACTTGTATGGCATCTCGTTACGAAGTCACTCAACTCACTATAACAGGCGAATGGTCAACTGCGAAAATTAACGAGGTAAATATCAACAGCCCTTCAAAGACGCAAGCGATGTGATGTTCAAAGACAAAATTGTCTCATAACTTATTCATGCTCAAGAAAGTTTCTACTTTTAGTATCAAAGCATCACTCAATGCCTTTTTTTTTTGTCTTAAATGTTTACTTTTTCAGTGGTGTCCTTTTCTTTTACATCCAAGTGTCCAGTCAGCTTATACCCTTTGACTATTTTCACGGGACAATGACCTTTTTTTTTTTTTTTTTTTTACTTTGGGTTCTCTAAGGTCTTTTTTGACGACTTGGCCAATCCATGAATGGTGTTTGAGTCATTTCAGATTTTAGACGTGTTAAAAAGGATTTAAAAAAAATAAAAATGGTCTTTTAAGTGTCAGTATACAGGGCCCGGCTTTGTAAATTATTATGTAAAGGGCTATAAGTTATGTTTTTCTTTTTGCATCGGGTTGTATGGGATGGAAGCCTGGAAGGTCACATGAATATGAATTGGATTTTTGTAATGAAAAGTAGGGTGTTCAAACAATCCGAACCAATCCAACCCAACCCAAATTGACGGGTTGGGTTGAGTTAAATATAATTTTGGGTTGAGTTGAGTTCAAAATCATGAAATATTCTTGGGTTGGGTTGGGTTGGGTTAAAGGTTGACATAAAATTAACTCAATCCAACCAACCCGAAATTATTATTTAGTTTAAAAATATATATACATATTAACTATAACATACTCATGTATGCGCATATTTTTTATTTAATTATTATTATTAGATTTTTTATTTTCCGTAATCTTTAATATTTTTTCAAATCTTAATAATTTATATATCATGATAAATATATAATTAAATCATGTAAAACATCTTTGTTGGTTTTAATTATATATTTATTTCATAGAAGTCGAATTATGTCTTCTCTTTTTGTTATTTTAGTTATCTATTTATTTTATGTTTTATAATTGGAATTTTTTATATGAATAATAATTGTATATTTATATTCATTTCGGGGGTGTTTGGGGCAAGGGGAATGGTAATGATTAAGGGGGGAATGGTAATAAGGAGGAGAATAGGGAGGGGAATGATTATGGGGGTAATGGTTATTTGTGTTTGGAGTGAAGGTAATGATTATTTGTGTTTGAGATAAAGGTAAAGATTATGAAAAAAATAAAATAATGAATATGATGTGAGTAAAAAATAGTGATGCGATGTATGAAAAGTTATTAGAGAGAGAATAAAAAGTAGTTATGGAGAGAATGAAAAAAGTGGTTTTTGGAAAATGTGATTATGGGGGGAATGATTCTCGGTGGCCCAAATACGGGAAATCATTCCCCTTTCCATTCTTCTTATTCTTGGTGGCCCAAACACCCCCTTCATTATCTTGATTGAGATAATATTTTATTTATACATAATGTATGACTAATTTGATAAAAAATATTTATAATTATAATTTATTATTGAATTCGATGACCCAACCCAACCCGAAATTTTGTGTCGGGTTAAAACCTCTCTTAACTCAATCCAATCCATGTTCACCCCTAATGAAAAGAACTTAATGACCCTATTTGATGGTTTTGTGATTACCACTGCGCAGGGTATGCAGCTTTGCCTGGATGCTTCATGTAAGCTTGTGGAGATCATGCGGACGTGCTTAAAGGAATCTGCCACCATTTCAGAGGAATAGAAAACTGTGACTTGATTTCTTTTAGTTTGGTACACAATTCCCCAATTTTGAGAAATATGTAAAAGTTTTGGGAAATGGTTCAGATGGATTGGATTGCTCAAGTTAAAGAAAAAAAAAAAAGTTTTTCATTTGCATTATAACTTGGTTGATTGCCATAGCAGAAGCAAAGTTGGGTTGAAGTTGAAGCTATTTATTATTTGGATATTCAATGTTGTTGGAGTCAAGTTTGAGCCCTCAGTCCAAGTCCCACTTGTTGGATATATTGTCTTTATATATAAGTTGTGTGGCCTTTGGTCTTCGCTCATCTGCCACGGC

mRNA sequence

ATTAACCTCAAATATATAAGAAGAGCTTCGCTAAAAGTGCACCGGCCGGCCTCTCCCGCTTCCAAGGTTCAGTTTTTCAATCTTGGGTTACTCGGATTGTTTCCAATCTCTTTGAAGAAACCATTCTTTGGAGTTTAAAGCCACCATCGTGGGGGGTTTTCTGTTCATTTGTCCCGACGGCGGAAGGAAATTTTGTGGGTGAGCTTCCAAAGTAATCGACCCATTGACATTCCGAAATGGCCAAAAAAGCGACACCAGCTACGACTACGTATTCTCCGTCTCCAACTACCCTCAAAACCAGACCACCCATCTTCAGAACCGACGACGTCGACTGGGTTCGCCCAGATGGCCGAGCCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATCGTTTCTGTATTTGGCCCTAGAGAAAGTAAGAAGGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTCCACTCCAGTTCGAGGACAGGGATCAGAAAACAAGGAGTTCTCCTCGATGCTACATAAAGCTTTGGAAGGAGCAATAATATTGGAGACATTTCCCAAGACAACCGTGGATGTATTTGCCTTGGTGTTGGAGTCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGTAAGAATCTTCTTATTGATCCAATGTTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATTACTTGTATGGCATCTCGTTACGAAGTCACTCAACTCACTATAACAGGCGAATGGTCAACTGCGAAAATTAACGAGGGTATGCAGCTTTGCCTGGATGCTTCATGTAAGCTTGTGGAGATCATGCGGACGTGCTTAAAGGAATCTGCCACCATTTCAGAGGAATAGAAAACTGTGACTTGATTTCTTTTAGTTTGGTACACAATTCCCCAATTTTGAGAAATATGTAAAAGTTTTGGGAAATGGTTCAGATGGATTGGATTGCTCAAGTTAAAGAAAAAAAAAAAAGTTTTTCATTTGCATTATAACTTGGTTGATTGCCATAGCAGAAGCAAAGTTGGGTTGAAGTTGAAGCTATTTATTATTTGGATATTCAATGTTGTTGGAGTCAAGTTTGAGCCCTCAGTCCAAGTCCCACTTGTTGGATATATTGTCTTTATATATAAGTTGTGTGGCCTTTGGTCTTCGCTCATCTGCCACGGC

Coding sequence (CDS)

ATGGCCAAAAAAGCGACACCAGCTACGACTACGTATTCTCCGTCTCCAACTACCCTCAAAACCAGACCACCCATCTTCAGAACCGACGACGTCGACTGGGTTCGCCCAGATGGCCGAGCCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATCGTTTCTGTATTTGGCCCTAGAGAAAGTAAGAAGGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTCCACTCCAGTTCGAGGACAGGGATCAGAAAACAAGGAGTTCTCCTCGATGCTACATAAAGCTTTGGAAGGAGCAATAATATTGGAGACATTTCCCAAGACAACCGTGGATGTATTTGCCTTGGTGTTGGAGTCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGATGCTGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGTAAGAATCTTCTTATTGATCCAATGTTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATTACTTGTATGGCATCTCGTTACGAAGTCACTCAACTCACTATAACAGGCGAATGGTCAACTGCGAAAATTAACGAGGGTATGCAGCTTTGCCTGGATGCTTCATGTAAGCTTGTGGAGATCATGCGGACGTGCTTAAAGGAATCTGCCACCATTTCAGAGGAATAG

Protein sequence

MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKESATISEE

Homology

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BLAST of Sed0016947 vs. NCBI nr
Match: XP_022986160.1 (exosome complex component RRP41-like [Cucurbita maxima])

HSP 1 Score: 486.5 bits (1251), Expect = 1.4e-133
Identity = 249/258 (96.51%), Postives = 253/258 (98.06%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MAKKATPAT+TYSPSPTT KTRPPIFR+DDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRTCLKES-ATISEE 258
           V IMR+CLKES AT+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of Sed0016947 vs. NCBI nr
Match: XP_023512894.1 (exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 485.7 bits (1249), Expect = 2.4e-133
Identity = 248/258 (96.12%), Postives = 253/258 (98.06%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MAKKATPAT+TYSPSPTT KTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTRKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPTLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRTCLKES-ATISEE 258
           V IMR+CLKES AT+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of Sed0016947 vs. NCBI nr
Match: XP_022140702.1 (exosome complex component RRP41-like [Momordica charantia] >XP_022140703.1 exosome complex component RRP41-like [Momordica charantia])

HSP 1 Score: 485.3 bits (1248), Expect = 3.2e-133
Identity = 244/257 (94.94%), Postives = 252/257 (98.05%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MAKKATPATTTYSPSPT  KTRPPIFR+D+ DWVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTF+TPVRGQGSENKEFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSENKEFSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDIFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
           FGKNLLIDPMLEEENYQDGSLMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRTCLKESATISEE 258
           V+IMR+CLKESATIS++
Sbjct: 241 VKIMRSCLKESATISQD 257

[Close]

BLAST of Sed0016947 vs. NCBI nr
Match: KAG6570792.1 (Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 485.3 bits (1248), Expect = 3.2e-133
Identity = 248/258 (96.12%), Postives = 253/258 (98.06%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MAKKATPAT+TYSPSPTT KTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRTCLKES-ATISEE 258
           V IMR+CLKES AT+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of Sed0016947 vs. NCBI nr
Match: XP_022944714.1 (exosome complex component RRP41-like [Cucurbita moschata])

HSP 1 Score: 485.3 bits (1248), Expect = 3.2e-133
Identity = 248/258 (96.12%), Postives = 252/258 (97.67%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MAKKATPATTTYSPSPTT KTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIIFETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRTCLKES-ATISEE 258
           V IMR+CLKES AT+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of Sed0016947 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.2e-104
Identity = 189/257 (73.54%), Postives = 221/257 (85.99%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MA K   AT TYSP     ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGS
Sbjct: 1   MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQG+++KE+SSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC
Sbjct: 121 KALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
            GK+L+IDP+ EEE  +DGS M+TCM SRYE+TQLTITGEW+T  INE MQLCLDAS KL
Sbjct: 181 IGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKL 240

Query: 241 VEIMRTCLKESATISEE 258
            EIMR CLK+SA+ S+E
Sbjct: 241 GEIMRDCLKQSASASDE 256

[Close]

BLAST of Sed0016947 vs. ExPASy Swiss-Prot
Match: Q6P0I8 (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-29
Identity = 80/216 (37.04%), Postives = 119/216 (55.09%), Query Frame = 0


Query: 45  RPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFST 104
           RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C      FS 
Sbjct: 43  RPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFRLAPFSC 102

Query: 105 PVRG---QGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASL 164
             RG   QGSE ++ S+ L ++L   + L  +P++ +DV  +VLE+ GS L   ++CAS+
Sbjct: 103 VKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHAVTCASM 162

Query: 165 ALADAGIMLYDLVASVSVSCFGKNLLIDPMLEE------ENYQD--GSLMITCMASRYEV 224
           ALADAGI +YD+V   ++   G   L+DP   E      E Y D  G + +  + +  +V
Sbjct: 163 ALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALLPNLNQV 222

Query: 225 TQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCL 249
           + L   GE     + E M+ C+D   KL  +++  L
Sbjct: 223 SGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQAL 258

[Close]

BLAST of Sed0016947 vs. ExPASy Swiss-Prot
Match: Q8U0L9 (Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-26
Identity = 78/233 (33.48%), Postives = 122/233 (52.36%), Query Frame = 0


Query: 22  RPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIILETFPKTTV 141
            K +   D   L    +   FS   R   G    + E S ++  ALE A+ILE FP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQ 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKE 251
           +  + +  M  + ++T L + G  +  +  E ++L +  +  + +  R  LKE
Sbjct: 184 EADVPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236

[Close]

BLAST of Sed0016947 vs. ExPASy Swiss-Prot
Match: O26779 (Exosome complex component Rrp41 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp41 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 70/221 (31.67%), Postives = 116/221 (52.49%), Query Frame = 0


Query: 34  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRL 93
           VR DGRAF + RP     G +  A GS+Y EFG  K++V+V+GPRE++ + +   D   +
Sbjct: 16  VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75

Query: 94  NCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGS 153
            C  +   FS   R   G    + E S +  +AL  A+ILE FP++ +DVF  VLE+ G 
Sbjct: 76  RCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGG 135

Query: 154 DLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMASR 213
                I+ AS+ALADAGI + D+V + +    G  +++D   EE+      + +  +   
Sbjct: 136 TRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRT 195

Query: 214 YEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKE 251
            E+T L   G  +  +    + L ++   ++ E+ +  L++
Sbjct: 196 REITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRK 236

[Close]

BLAST of Sed0016947 vs. ExPASy Swiss-Prot
Match: O59223 (Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-26
Identity = 77/233 (33.05%), Postives = 123/233 (52.79%), Query Frame = 0


Query: 22  RPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKALEGAIILETFPKTTV 141
            K +   D   L    +   FS   R   G    + E S ++  ALE A+ILE FP+T++
Sbjct: 64  SKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQ 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKE 251
           +  + +  M  + ++T L + G  +  +  E ++L +  +  + +  R  LKE
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKE 236

[Close]

BLAST of Sed0016947 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 6.9e-134
Identity = 249/258 (96.51%), Postives = 253/258 (98.06%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MAKKATPAT+TYSPSPTT KTRPPIFR+DDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRTCLKES-ATISEE 258
           V IMR+CLKES AT+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of Sed0016947 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.5e-133
Identity = 244/257 (94.94%), Postives = 252/257 (98.05%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MAKKATPATTTYSPSPT  KTRPPIFR+D+ DWVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTF+TPVRGQGSENKEFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSENKEFSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDIFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
           FGKNLLIDPMLEEENYQDGSLMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRTCLKESATISEE 258
           V+IMR+CLKESATIS++
Sbjct: 241 VKIMRSCLKESATISQD 257

[Close]

BLAST of Sed0016947 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.5e-133
Identity = 248/258 (96.12%), Postives = 252/258 (97.67%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MAKKATPATTTYSPSPTT KTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIIFETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
           FGKNLLIDP LEEENYQDGSLMITCM SRYEVTQLTITGEWSTAKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRTCLKES-ATISEE 258
           V IMR+CLKES AT+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of Sed0016947 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 4.2e-131
Identity = 245/259 (94.59%), Postives = 252/259 (97.30%), Query Frame = 0


Query: 1   MAKKATP-ATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASG 60
           MAKKATP  TTTYSPSPT  KTRPP+FRTDDV+WVRPDGR FHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240
           CFGKNLLIDP+LEEENYQDGSLMITCM SRYEVTQLTITGEW+T+KINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRTCLKES-ATISEE 258
           LVEIMR+CLKES ATISEE
Sbjct: 241 LVEIMRSCLKESAATISEE 259

[Close]

BLAST of Sed0016947 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 7.9e-130
Identity = 241/258 (93.41%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT  KTRP +FRTDDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
           FGKNLLID +LEEENYQDGSLMITCM SRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240

Query: 241 VEIMRTCLKESA-TISEE 258
           VEIMR+CLKESA TISEE
Sbjct: 241 VEIMRSCLKESAVTISEE 258

[Close]

BLAST of Sed0016947 vs. TAIR 10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 379.4 bits (973), Expect = 2.3e-105
Identity = 189/257 (73.54%), Postives = 221/257 (85.99%), Query Frame = 0


Query: 1   MAKKATPATTTYSPSPTTLKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
           MA K   AT TYSP     ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGS
Sbjct: 1   MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQG+++KE+SSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLH 120

Query: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC
Sbjct: 121 KALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSC 180

Query: 181 FGKNLLIDPMLEEENYQDGSLMITCMASRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240
            GK+L+IDP+ EEE  +DGS M+TCM SRYE+TQLTITGEW+T  INE MQLCLDAS KL
Sbjct: 181 IGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKL 240

Query: 241 VEIMRTCLKESATISEE 258
            EIMR CLK+SA+ S+E
Sbjct: 241 GEIMRDCLKQSASASDE 256

[Close]

BLAST of Sed0016947 vs. TAIR 10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-20
Identity = 67/223 (30.04%), Postives = 106/223 (47.53%), Query Frame = 0


Query: 34  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGR 93
           +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 94  LNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 153
           + C  S   FST  R +      + E S ++ + +E  I+ E  P + +D+F  VL++ G
Sbjct: 69  VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128

Query: 154 SDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMAS 213
                 I+ A+LALADAGI + DL  S S        L+D    E++     + +  +  
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 214 RYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES 252
             +V+ L +  +           L  +    + E +R  L+E+
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQEN 231

[Close]

BLAST of Sed0016947 vs. TAIR 10
Match: AT3G61620.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-20
Identity = 67/223 (30.04%), Postives = 106/223 (47.53%), Query Frame = 0


Query: 34  VRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGR 93
           +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 94  LNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 153
           + C  S   FST  R +      + E S ++ + +E  I+ E  P + +D+F  VL++ G
Sbjct: 69  VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128

Query: 154 SDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMAS 213
                 I+ A+LALADAGI + DL  S S        L+D    E++     + +  +  
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 214 RYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRTCLKES 252
             +V+ L +  +           L  +    + E +R  L+E+
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQEN 231

[Close]

BLAST of Sed0016947 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-12
Identity = 51/163 (31.29%), Postives = 76/163 (46.63%), Query Frame = 0


Query: 35  RPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 94
           R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 64

Query: 95  SVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 154
              +     P  GQ G   KE+  +L + ++   +L   P TT  V   V+   GS LP 
Sbjct: 65  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 124

Query: 155 VISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE 195
            I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Sbjct: 125 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160

[Close]

BLAST of Sed0016947 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-12
Identity = 51/163 (31.29%), Postives = 76/163 (46.63%), Query Frame = 0


Query: 35  RPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 94
           R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 64

Query: 95  SVSYTTFSTPVRGQ-GSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPV 154
              +     P  GQ G   KE+  +L + ++   +L   P TT  V   V+   GS LP 
Sbjct: 65  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 124

Query: 155 VISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE 195
            I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Sbjct: 125 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160

The following BLAST results are available for this feature:

BLAST of Sed0016947 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986160.1	1.4e-133	96.51	exosome complex component RRP41-like [Cucurbita maxima]	[more]
XP_023512894.1	2.4e-133	96.12	exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022140702.1	3.2e-133	94.94	exosome complex component RRP41-like [Momordica charantia] >XP_022140703.1 exoso...	[more]
KAG6570792.1	3.2e-133	96.12	Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma su...	[more]
XP_022944714.1	3.2e-133	96.12	exosome complex component RRP41-like [Cucurbita moschata]	[more]

BLAST of Sed0016947 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVK7	3.2e-104	73.54	Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L P...	[more]
Q6P0I8	3.4e-29	37.04	Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2	[more]
Q8U0L9	2.7e-26	33.48	Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM ...	[more]
O26779	3.5e-26	31.67	Exosome complex component Rrp41 OS=Methanothermobacter thermautotrophicus (strai...	[more]
O59223	4.6e-26	33.05	Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / D...	[more]

BLAST of Sed0016947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDA9	6.9e-134	96.51	exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981...	[more]
A0A6J1CHT0	1.5e-133	94.94	exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1FYV1	1.5e-133	96.12	exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A1S3CKF3	4.2e-131	94.59	exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=...	[more]
A0A0A0KEK6	7.9e-130	93.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1	[more]

BLAST of Sed0016947 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27490.1	2.3e-105	73.54	3'-5'-exoribonuclease family protein	[more]
AT3G61620.1	2.3e-20	30.04	3'-5'-exoribonuclease family protein	[more]
AT3G61620.2	2.3e-20	30.04	3'-5'-exoribonuclease family protein	[more]
AT3G46210.1	3.9e-12	31.29	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.2	3.9e-12	31.29	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 43..155 e-value: 7.0E-24 score: 84.8
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 13..157 e-value: 1.5E-38 score: 134.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11953:SF2	EXOSOME COMPLEX COMPONENT MTR3	coord: 17..156
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 17..156
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 33..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016947.1	Sed0016947.1	mRNA
Sed0016947.2	Sed0016947.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0009845	seed germination
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0016740	transferase activity