Sed0016926 (gene) Chayote v1

Overview


Name	Sed0016926
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG02: 51217012 .. 51219766 (+)
RNA-Seq Expression	Sed0016926
Synteny	Sed0016926

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGAATGATCCAATTTCAGACAGCATTTGGCATTACCAGCTGTCTCTCTCTAGGTATGTATAGTCTCTTCCTTTCAACTTTTTTTTCTTCTTTTTTTCGATCGATTCTTTGGCTCTTCGATTTTTCGCTGATTCGAGTTTCGTTTTCGATTAATCTGCGCATGATCTTTGATTTTGTTTTCAACGCTCTTTGTTAAGAAATTCTTCATTCGCTTTAAACGCGAAAGGATATGGAATTTATGGAGAATCGAAGTCGAATTTTGTTGAACTTGTAAATTGGGGATTTTGGATTTGGAGACGGGAAATTATGAAGGTCGGGTTTGTAGATCGTCGATATTCGTTTTTTAATCGGAGTTTCGTGCAGTGGTTGTTAGGGTTCTTGAATTCATTGGGGATTTGCATCTCGATTGTGATAATACAGGGGTATACTTTAAATAGAAAATGCATTTATTTCACCATACAGTTTTTCTAGCGTCTGCTAGTTGTAGAAATTGTGTCAAGATGTTTGCACGTTGAACCACCCATGGCTTTGTGGTCAAGAGTACAATAAGTAACTTAGAGGTGTTGGGTTCCTAGGAAATAATTTCCTATGAATTTCCTTGTCGTCCAAATGTTGTAGGGTGGTCAGGCTGTGAAAATAGTCCAGTTACACGTAAGCTAGTCTTGGCACTAACAAATAAACAAAAAAAGTTTGCATGTTTTTCATCGCATTCTTCTTGGTGGACATGTTTTTTTGTTTTTTTTTTTAAATTTTCGTGACTGTCTGGACCAACTTGCTTGCACCTCGAGTAATGTTACAAGACATACTGTTTGACCCTACAACATTTGGATGCCAAGGAAATCCGTAGAAAATTAATTCCTTAGGTAGGATGATGAAATGAAATCAAATGATTGGAACATATATTTTTATTTTGAAACAAGAGTAACCACACCCTAGGCACTGGAGACATCGAAAGAGTACTAACACAGAGAAGACTCGAACTTGGGACCTTGGGGGAGCATAACCTCAAAGCTCAAGTCTTCAACCAGTGCCCCACCCCTTGGGGACGATTGGAATATATTTTTAATACAGTTGACTCATTTATTTCTGAATATAAACTAACTGTTTAAAACTATGACTGCAAGGTAAGTTCTGTTGTCTCACTAGATTATATAAGTTTTGGATTTTTGTAAGGCTTGAAAGAATATAGAGAACATCTAGTTTCTATGAGGATTGTGGAGATAATTTTTGTCAAGATAAGGTTCAAAAGCTGTATTTGGATTGAAGTTCTTAGTCTAATTAAAACATGTTTTCTTTTAAAAGATAGGCATGTCATATATATTTTTTGTTAGAATGGGAATGAACAGAGTATTGATTTCGTCAAGATGCATCATGCGTGCTAGTGAACCATGAGGAAGTTTTGTGCGTTCAATCTTAAAAGGGAAATAAAAGAATGCATTAGGACATGCAGCTTAGTTTTAAATGATTAGGTTAAGGTCCATACCTCTTTTTATTGTCCTTTTGTTATTTTTTGAAAGATCTGCATTTTGTACTATGGTTGAGTCGTCTTGCTGCTAGAATAGTAATTTCTGTGGGTATTGCATCCAAAGGCCGCCAAATCAACAGTCGAATTATCCTTTTCTTTTTTTTTATAAGAAACAATTTCAATCCATGATGGCATAAGAAACCATCATGGAGTGGCTCAATTGGTCAAGAAGGGTTTGAAGTGCATAAAGTGATGAGTTCAACCTATGGTGGCCACCTATCTAGGAATTAATTTCCTACGGGTTTCTTTAGCATTCAAATGTTGTAAGGTCAGACGGTATGACTTGTGGCATTAGTCGAGACGCGCGAAAACTGGCCCGGATGTAAAATAAAAAACAATTTCATTAATAGTATGAAATTTCGAAGCACAAAATATCATTGTAATAGATTTCTCCAACTATGGATAAGAGAATCGTAGCTATATTCGCAGAATAGCAGAGATATTTTACCCAAAGGCCGAATTATCAATTATGCATTCATTTCCTCCCCCATTTTCTTTACTGCCGTTGTGTGCTTGTCTGTATAAGCTGCAAGACTCTAGTCATCATTGTATTTACAGGATAGGTCTTTTGAAGTTTAAATTCTACAAAAGGGGTTTGATCTAGTGTTCGTGCAATTATTTTGTCGTCATAAATTGCCAATGCCGTTAATAGTTCATTACAACTTTTGGATCACTTTTTGCTCAGCTAGAATAACATATTCAGTCGTTTGCAGAAATAAAACAAACCGAGTCCATTATATGGATATAACAGTCCCTGGAAGGAATGCTCCTAAGGAAGTGACTCGGGAGTCGCTTATCGCCATCTCTTACACGGAACCAGAAACAGCTCTCACTTCGAAGCAATCATCTGGGAAACTTAGCAGTGAAAACCTCAATCTGGTCAACAGGATAGACGACAATCTGGTGGAAAGGAACGTATATGATGGAGAAGAGAAACATAGAACTGAGCTGATTGCTATTTCCTTCCTTGAGTTACCACCTGAAACTGAAAGTGTAACTGTGGGCAAACTCAAGGCTTAGTGCCTGGACGTCCGTTATCGTAATTGTATACGTTCTTATTGTATAAACGATACTAATCAAAGTTCATGGAGGTGTTGCGACTGTAGACCAACGCCGTCCATGTTTTTTGTTTCTGTATTATAGACCCTCACACGGGTTGTCTGTACTATCTTGTGGAAACTTATTGCTGTGTGAGCCCAATGAATGAACTTATGAAGCCTTGGTATCA

mRNA sequence

GGGAGAATGATCCAATTTCAGACAGCATTTGGCATTACCAGCTGTCTCTCTCTAGAAATAAAACAAACCGAGTCCATTATATGGATATAACAGTCCCTGGAAGGAATGCTCCTAAGGAAGTGACTCGGGAGTCGCTTATCGCCATCTCTTACACGGAACCAGAAACAGCTCTCACTTCGAAGCAATCATCTGGGAAACTTAGCAGTGAAAACCTCAATCTGGTCAACAGGATAGACGACAATCTGGTGGAAAGGAACGTATATGATGGAGAAGAGAAACATAGAACTGAGCTGATTGCTATTTCCTTCCTTGAGTTACCACCTGAAACTGAAAGTGTAACTGTGGGCAAACTCAAGGCTTAGTGCCTGGACGTCCGTTATCGTAATTGTATACGTTCTTATTGTATAAACGATACTAATCAAAGTTCATGGAGGTGTTGCGACTGTAGACCAACGCCGTCCATGTTTTTTGTTTCTGTATTATAGACCCTCACACGGGTTGTCTGTACTATCTTGTGGAAACTTATTGCTGTGTGAGCCCAATGAATGAACTTATGAAGCCTTGGTATCA

Coding sequence (CDS)

ATGGATATAACAGTCCCTGGAAGGAATGCTCCTAAGGAAGTGACTCGGGAGTCGCTTATCGCCATCTCTTACACGGAACCAGAAACAGCTCTCACTTCGAAGCAATCATCTGGGAAACTTAGCAGTGAAAACCTCAATCTGGTCAACAGGATAGACGACAATCTGGTGGAAAGGAACGTATATGATGGAGAAGAGAAACATAGAACTGAGCTGATTGCTATTTCCTTCCTTGAGTTACCACCTGAAACTGAAAGTGTAACTGTGGGCAAACTCAAGGCTTAG

Protein sequence

MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNVYDGEEKHRTELIAISFLELPPETESVTVGKLKA

Homology

[Close]

BLAST of Sed0016926 vs. NCBI nr
Match: KAG6582528.1 (hypothetical protein SDJN03_22530, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 70/92 (76.09%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNV 60
          MDITVPG N P+EVTRESLIAISY EPET L+SK+SSGKLSSENLNLVN ID NLVE   
Sbjct: 1  MDITVPGGNDPEEVTRESLIAISYEEPETTLSSKRSSGKLSSENLNLVNGIDHNLVEGKE 60

Query: 61 YDGEEKHRTELIAISFLELPPETESVTVGKLK 93
          YD  EK+R+ELIAISFLE PPE  S TV +LK
Sbjct: 61 YD-VEKYRSELIAISFLESPPEIGSGTVTELK 91

[Close]

BLAST of Sed0016926 vs. NCBI nr
Match: KAG7018913.1 (hypothetical protein SDJN02_20787, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 70/92 (76.09%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNV 60
          MDITVPG N P+EVTRESLIAISY EPET L+SK+SSGKLSSENLNLVN ID NLVE   
Sbjct: 1  MDITVPGGNDPEEVTRESLIAISYEEPETTLSSKRSSGKLSSENLNLVNGIDHNLVEGKE 60

Query: 61 YDGEEKHRTELIAISFLELPPETESVTVGKLK 93
          YD  EK+R+ELIAISFLE PPE  S TV +LK
Sbjct: 61 YD-VEKYRSELIAISFLESPPEIGSGTVTELK 91

[Close]

BLAST of Sed0016926 vs. NCBI nr
Match: KAA0049081.1 (hypothetical protein E6C27_scaffold171G003100 [Cucumis melo var. makuwa] >TYK17482.1 hypothetical protein E5676_scaffold434G003470 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 4.8e-23
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNV 60
          MDITVPGRNAP+EVTRESLI+ISY EPET L+SK+ S KLSSEN+NL N I+ N VE   
Sbjct: 1  MDITVPGRNAPEEVTRESLISISYEEPETILSSKRPSEKLSSENINLANGINHNQVEGKE 60

Query: 61 YDGEEKHRTELIAISFLELPPETESVTV 89
          YDG+EK R+ELIAISFLE  PET SV V
Sbjct: 61 YDGDEKFRSELIAISFLESLPETGSVPV 88

[Close]

BLAST of Sed0016926 vs. NCBI nr
Match: KGN56651.1 (hypothetical protein Csa_009703 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 62/92 (67.39%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 1  MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNV 60
          MD TVPGRNAP+EVTRESLI+ISY EPET L+S Q S K+S EN+NL N I+ N +E   
Sbjct: 1  MDTTVPGRNAPEEVTRESLISISYEEPETVLSSNQPSEKISRENINLANGINHNQMEGKE 60

Query: 61 YDGEEKHRTELIAISFLELPPETESVTVGKLK 93
          YDG+EK R+ELIAISFLE  PET SV V +LK
Sbjct: 61 YDGDEKFRSELIAISFLESLPETGSVPVAELK 92

[Close]

BLAST of Sed0016926 vs. NCBI nr
Match: XP_022974968.1 (uncharacterized protein LOC111473815 [Cucurbita maxima])

HSP 1 Score: 111.3 bits (277), Expect = 4.5e-21
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1   MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNV 60
           MDITVPG+N  +EVTRESLIAISY+EPE+AL+SK+ SGKL+S+NL        NLVE   
Sbjct: 25  MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNL--------NLVEGKE 84

Query: 61  YDGEEKHRTELIAISFLELPPETESVTVGKLK 93
           +D +EK+R+ELIAISFLE PPE  SV VGKLK
Sbjct: 85  FDADEKYRSELIAISFLESPPEIGSVPVGKLK 108

[Close]

BLAST of Sed0016926 vs. ExPASy TrEMBL
Match: A0A5A7U641 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003470 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.3e-23
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNV 60
          MDITVPGRNAP+EVTRESLI+ISY EPET L+SK+ S KLSSEN+NL N I+ N VE   
Sbjct: 1  MDITVPGRNAPEEVTRESLISISYEEPETILSSKRPSEKLSSENINLANGINHNQVEGKE 60

Query: 61 YDGEEKHRTELIAISFLELPPETESVTV 89
          YDG+EK R+ELIAISFLE  PET SV V
Sbjct: 61 YDGDEKFRSELIAISFLESLPETGSVPV 88

[Close]

BLAST of Sed0016926 vs. ExPASy TrEMBL
Match: A0A0A0L967 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127140 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.8e-23
Identity = 62/92 (67.39%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 1  MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNV 60
          MD TVPGRNAP+EVTRESLI+ISY EPET L+S Q S K+S EN+NL N I+ N +E   
Sbjct: 1  MDTTVPGRNAPEEVTRESLISISYEEPETVLSSNQPSEKISRENINLANGINHNQMEGKE 60

Query: 61 YDGEEKHRTELIAISFLELPPETESVTVGKLK 93
          YDG+EK R+ELIAISFLE  PET SV V +LK
Sbjct: 61 YDGDEKFRSELIAISFLESLPETGSVPVAELK 92

[Close]

BLAST of Sed0016926 vs. ExPASy TrEMBL
Match: A0A6J1IHW2 (uncharacterized protein LOC111473815 OS=Cucurbita maxima OX=3661 GN=LOC111473815 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.2e-21
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1   MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNV 60
           MDITVPG+N  +EVTRESLIAISY+EPE+AL+SK+ SGKL+S+NL        NLVE   
Sbjct: 25  MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNL--------NLVEGKE 84

Query: 61  YDGEEKHRTELIAISFLELPPETESVTVGKLK 93
           +D +EK+R+ELIAISFLE PPE  SV VGKLK
Sbjct: 85  FDADEKYRSELIAISFLESPPEIGSVPVGKLK 108

[Close]

BLAST of Sed0016926 vs. ExPASy TrEMBL
Match: A0A6J1HHB9 (uncharacterized protein LOC111463263 OS=Cucurbita moschata OX=3662 GN=LOC111463263 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.9e-21
Identity = 60/92 (65.22%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1   MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNV 60
           MDITVPG+N  +EVTRESLIAISY+EPE+AL+SK+ SGKL+S+NL        NLVE   
Sbjct: 25  MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNL--------NLVEGKE 84

Query: 61  YDGEEKHRTELIAISFLELPPETESVTVGKLK 93
           +D +EK+R+ELI+ISFLE PPE  SV VGKLK
Sbjct: 85  FDADEKYRSELISISFLESPPEIGSVPVGKLK 108

[Close]

BLAST of Sed0016926 vs. ExPASy TrEMBL
Match: A0A7N2LFG9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1   MDITVPGRNAPKEVTRESLIAISYTEPETALTSKQSSGKLSSENLNLVNRIDDNLVERNV 60
           MD TVPG+  P EVTRESLI+ISY+EP+   T+K SS KL+SE  N + R+D N      
Sbjct: 53  MDKTVPGKEVPDEVTRESLISISYSEPDKVPTTKLSSEKLNSE--NHLGRVDSN------ 112

Query: 61  YDGEEKHRTELIAISFLELPPET----ESVTVGKLK 93
             G+EK+R+ELI+IS+ +  PET     S+++G+LK
Sbjct: 113 --GDEKYRSELISISYTQ-SPETGGLPVSLSLGELK 137

The following BLAST results are available for this feature:

BLAST of Sed0016926 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582528.1	1.5e-24	76.09	hypothetical protein SDJN03_22530, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018913.1	1.5e-24	76.09	hypothetical protein SDJN02_20787, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0049081.1	4.8e-23	72.73	hypothetical protein E6C27_scaffold171G003100 [Cucumis melo var. makuwa] >TYK174...	[more]
KGN56651.1	1.4e-22	67.39	hypothetical protein Csa_009703 [Cucumis sativus]	[more]
XP_022974968.1	4.5e-21	66.30	uncharacterized protein LOC111473815 [Cucurbita maxima]	[more]

BLAST of Sed0016926 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0016926 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U641	2.3e-23	72.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L967	6.8e-23	67.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127140 PE=4 SV=1	[more]
A0A6J1IHW2	2.2e-21	66.30	uncharacterized protein LOC111473815 OS=Cucurbita maxima OX=3661 GN=LOC111473815...	[more]
A0A6J1HHB9	4.9e-21	65.22	uncharacterized protein LOC111463263 OS=Cucurbita moschata OX=3662 GN=LOC1114632...	[more]
A0A7N2LFG9	1.7e-10	50.00	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Sed0016926 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35282:SF2	F5D14.24 PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR35282	F5D14.24 PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016926.1	Sed0016926.1	mRNA