Sed0016879 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAAAGATAGAAGCAAAATCTGTAAAATCAGTGGAGAAATTGAATAAATCGCAAGCAGAAAATGGCGACGATCTTCATCGCCGTCCAGTGCTACCAGTGCTCCACCATGCAGGCACCGATCTCGTTCCGTCTTTTTCCGTTTCTTGTTTTTCTTCTCTGTTAACATCTCTAATGGCGGTGGTTTCGGTTCAGGTAAAGCAGCAGCGGCGGAGCGGGAACAAGTGGAACTGTGCAGTGTGCAACGAGAAGCAATCGGTGCAGAAGGTCTTCGCTCGAGCTTCAATGGCGAAAGACGTCCGTAAGTTCGTACAGAGCTTCAACATGTCTCGGAGATACGCGGATGAACAGACGAAAATCGACGAGCTAGAGGAAGAAATTGTCGACGAAGATCAGATTGAGTGCAGTGCGAAGAAGGAAAGACGCAGCGATTGGAATGAGTACCTCGATCTCGAAGAAGATCGCAGCCAAAGTGGAGGAGAAAACAATCGAGAATTAGGTCACCGATTCTGTAAATACATTTTTACGATTAGTTAATCGATCTCTGTTGGATGATGATTTTCTCTGTAGCAGGGAGTGATTTTTCCGAAGTTAAGATCGTGACGGAGTTTCCAGAAGTAAAGAACAAGAGATCTGGTTCAACGAGCCGTTCAAGCTGGTCCGAAGATGGCGAAGGAGATGGACTTTACAGACCAGTTTTCTCTAAAAGGAAACACATCGCCAAGAATTCGAGCTCCCAAGGTAACATTTGTATATGATCCTAATATTTCTGCACTGTTTCAAAACTAATGTTAGCAAAAAAATGGCTTTAAATTGCAGATGAGATTCGAAACTGGGAGTCTCCATCAGCCATTGATGCATCAAAATGGAGTAATGAAAACATTTCCACGAAGAGGCAACACATCGCCAAGAATTTCAAATCCAGAGGTAAAACGTTGAGATGATCTTCTTAATACTCGTTTCAAAAATTAAAAATATCGAGTCCAAACGGCCATGAATTGCAGATGGGATCCGAAAATGGAAGTCGCCATTAGCCATTGATGCATCAAAATGGAGTAAAGAAGAAGATGGAAATGCAAGAACGAAAACCAGCATTTTAGCAAAGGTAAGAGGACCTTCGAAGTGGAGTGAATACATAACTGAAGAAGAAAACTATGGAGCCGAAAATGGAGCAATTTTGTCAACAGAACAGGGCATAAACATCTTCGAGACAATGCTGAATGATGATAGAGTTGAAGATGATATCCACCCTGATTTCAAATGACAAGCTCATAAAATTCTACCAAACCAACATCGTGGTGAGCCCGAAATGACCGCGATCAAACAATTTTCGCTTAATTTTTGGGATATGCCCTTCCACTTGCATGGAACTGAAACCTCTTATTCACCTTTGTTTTGATATTAAGGAGAAGATAGTGAAGATAAGAGAGGTTTCTGGTATTACAGTATCATACCCTGCATTCAATTTTAGTTTAGCTTTTATAAATAATTTTGAAGCCAACTCCAAATATGAATGAATGTTCATACCCGAAAGTTTCCTGAGAAAAATTATTATGTTAGTAGGCTGAATTTTCCATTTAGCAGTAACATCAC AGAAAAGATAGAAGCAAAATCTGTAAAATCAGTGGAGAAATTGAATAAATCGCAAGCAGAAAATGGCGACGATCTTCATCGCCGTCCAGTGCTACCAGTGCTCCACCATGCAGGTAAAGCAGCAGCGGCGGAGCGGGAACAAGTGGAACTGTGCAGTGTGCAACGAGAAGCAATCGGTGCAGAAGGTCTTCGCTCGAGCTTCAATGGCGAAAGACGTCCGTAAGTTCGTACAGAGCTTCAACATGTCTCGGAGATACGCGGATGAACAGACGAAAATCGACGAGCTAGAGGAAGAAATTGTCGACGAAGATCAGATTGAGTGCAGTGCGAAGAAGGAAAGACGCAGCGATTGGAATGAGTACCTCGATCTCGAAGAAGATCGCAGCCAAAGTGGAGGAGAAAACAATCGAGAATTAGGGAGTGATTTTTCCGAAGTTAAGATCGTGACGGAGTTTCCAGAAGTAAAGAACAAGAGATCTGGTTCAACGAGCCGTTCAAGCTGGTCCGAAGATGGCGAAGGAGATGGACTTTACAGACCAGTTTTCTCTAAAAGGAAACACATCGCCAAGAATTCGAGCTCCCAAGATGAGATTCGAAACTGGGAGTCTCCATCAGCCATTGATGCATCAAAATGGAGTAATGAAAACATTTCCACGAAGAGGCAACACATCGCCAAGAATTTCAAATCCAGAGATGGGATCCGAAAATGGAAGTCGCCATTAGCCATTGATGCATCAAAATGGAGTAAAGAAGAAGATGGAAATGCAAGAACGAAAACCAGCATTTTAGCAAAGGTAAGAGGACCTTCGAAGTGGAGTGAATACATAACTGAAGAAGAAAACTATGGAGCCGAAAATGGAGCAATTTTGTCAACAGAACAGGGCATAAACATCTTCGAGACAATGCTGAATGATGATAGAGTTGAAGATGATATCCACCCTGATTTCAAATGACAAGCTCATAAAATTCTACCAAACCAACATCGTGGTGAGCCCGAAATGACCGCGATCAAACAATTTTCGCTTAATTTTTGGGATATGCCCTTCCACTTGCATGGAACTGAAACCTCTTATTCACCTTTGTTTTGATATTAAGGAGAAGATAGTGAAGATAAGAGAGGTTTCTGGTATTACAGTATCATACCCTGCATTCAATTTTAGTTTAGCTTTTATAAATAATTTTGAAGCCAACTCCAAATATGAATGAATGTTCATACCCGAAAGTTTCCTGAGAAAAATTATTATGTTAGTAGGCTGAATTTTCCATTTAGCAGTAACATCAC ATGGCGACGATCTTCATCGCCGTCCAGTGCTACCAGTGCTCCACCATGCAGGTAAAGCAGCAGCGGCGGAGCGGGAACAAGTGGAACTGTGCAGTGTGCAACGAGAAGCAATCGGTGCAGAAGGTCTTCGCTCGAGCTTCAATGGCGAAAGACGTCCGTAAGTTCGTACAGAGCTTCAACATGTCTCGGAGATACGCGGATGAACAGACGAAAATCGACGAGCTAGAGGAAGAAATTGTCGACGAAGATCAGATTGAGTGCAGTGCGAAGAAGGAAAGACGCAGCGATTGGAATGAGTACCTCGATCTCGAAGAAGATCGCAGCCAAAGTGGAGGAGAAAACAATCGAGAATTAGGGAGTGATTTTTCCGAAGTTAAGATCGTGACGGAGTTTCCAGAAGTAAAGAACAAGAGATCTGGTTCAACGAGCCGTTCAAGCTGGTCCGAAGATGGCGAAGGAGATGGACTTTACAGACCAGTTTTCTCTAAAAGGAAACACATCGCCAAGAATTCGAGCTCCCAAGATGAGATTCGAAACTGGGAGTCTCCATCAGCCATTGATGCATCAAAATGGAGTAATGAAAACATTTCCACGAAGAGGCAACACATCGCCAAGAATTTCAAATCCAGAGATGGGATCCGAAAATGGAAGTCGCCATTAGCCATTGATGCATCAAAATGGAGTAAAGAAGAAGATGGAAATGCAAGAACGAAAACCAGCATTTTAGCAAAGGTAAGAGGACCTTCGAAGTGGAGTGAATACATAACTGAAGAAGAAAACTATGGAGCCGAAAATGGAGCAATTTTGTCAACAGAACAGGGCATAAACATCTTCGAGACAATGCTGAATGATGATAGAGTTGAAGATGATATCCACCCTGATTTCAAATGA MATIFIAVQCYQCSTMQVKQQRRSGNKWNCAVCNEKQSVQKVFARASMAKDVRKFVQSFNMSRRYADEQTKIDELEEEIVDEDQIECSAKKERRSDWNEYLDLEEDRSQSGGENNRELGSDFSEVKIVTEFPEVKNKRSGSTSRSSWSEDGEGDGLYRPVFSKRKHIAKNSSSQDEIRNWESPSAIDASKWSNENISTKRQHIAKNFKSRDGIRKWKSPLAIDASKWSKEEDGNARTKTSILAKVRGPSKWSEYITEEENYGAENGAILSTEQGINIFETMLNDDRVEDDIHPDFK Homology
BLAST of Sed0016879 vs. NCBI nr
Match: XP_038885326.1 (MRN complex-interacting protein [Benincasa hispida]) HSP 1 Score: 365.5 bits (937), Expect = 4.2e-97 Identity = 199/314 (63.38%), Postives = 246/314 (78.34%), Query Frame = 0
BLAST of Sed0016879 vs. NCBI nr
Match: XP_004141004.1 (MRN complex-interacting protein [Cucumis sativus] >KGN46102.1 hypothetical protein Csa_005258 [Cucumis sativus]) HSP 1 Score: 356.3 bits (913), Expect = 2.6e-94 Identity = 198/311 (63.67%), Postives = 239/311 (76.85%), Query Frame = 0
BLAST of Sed0016879 vs. NCBI nr
Match: XP_008456719.1 (PREDICTED: UPF0544 protein C5orf45 homolog [Cucumis melo] >KAA0031637.1 UPF0544 protein C5orf45-like protein [Cucumis melo var. makuwa] >TYK04473.1 UPF0544 protein C5orf45-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 350.1 bits (897), Expect = 1.8e-92 Identity = 199/311 (63.99%), Postives = 239/311 (76.85%), Query Frame = 0
BLAST of Sed0016879 vs. NCBI nr
Match: XP_023549686.1 (MRN complex-interacting protein isoform X2 [Cucurbita pepo subsp. pepo] >XP_023549687.1 MRN complex-interacting protein isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 327.4 bits (838), Expect = 1.3e-85 Identity = 192/307 (62.54%), Postives = 224/307 (72.96%), Query Frame = 0
BLAST of Sed0016879 vs. NCBI nr
Match: XP_023549685.1 (MRN complex-interacting protein isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 325.9 bits (834), Expect = 3.7e-85 Identity = 197/322 (61.18%), Postives = 229/322 (71.12%), Query Frame = 0
BLAST of Sed0016879 vs. ExPASy Swiss-Prot
Match: Q32PP1 (MRN complex-interacting protein OS=Danio rerio OX=7955 GN=mrnip PE=2 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 2.0e-04 Identity = 61/212 (28.77%), Postives = 89/212 (41.98%), Query Frame = 0
BLAST of Sed0016879 vs. ExPASy TrEMBL
Match: A0A0A0KCJ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052770 PE=4 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 1.2e-94 Identity = 198/311 (63.67%), Postives = 239/311 (76.85%), Query Frame = 0
BLAST of Sed0016879 vs. ExPASy TrEMBL
Match: A0A5D3BXL1 (UPF0544 protein C5orf45-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00830 PE=4 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 8.9e-93 Identity = 199/311 (63.99%), Postives = 239/311 (76.85%), Query Frame = 0
BLAST of Sed0016879 vs. ExPASy TrEMBL
Match: A0A1S3C3H7 (UPF0544 protein C5orf45 homolog OS=Cucumis melo OX=3656 GN=LOC103496578 PE=4 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 8.9e-93 Identity = 199/311 (63.99%), Postives = 239/311 (76.85%), Query Frame = 0
BLAST of Sed0016879 vs. ExPASy TrEMBL
Match: A0A6J1JWE4 (MRN complex-interacting protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488952 PE=4 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 6.8e-85 Identity = 184/303 (60.73%), Postives = 220/303 (72.61%), Query Frame = 0
BLAST of Sed0016879 vs. ExPASy TrEMBL
Match: A0A6J1FH51 (MRN complex-interacting protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445345 PE=4 SV=1) HSP 1 Score: 323.2 bits (827), Expect = 1.2e-84 Identity = 187/304 (61.51%), Postives = 220/304 (72.37%), Query Frame = 0
BLAST of Sed0016879 vs. TAIR 10
Match: AT1G71760.1 (unknown protein; Has 92 Blast hits to 92 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). ) HSP 1 Score: 131.7 bits (330), Expect = 9.5e-31 Identity = 92/234 (39.32%), Postives = 133/234 (56.84%), Query Frame = 0
BLAST of Sed0016879 vs. TAIR 10
Match: AT1G71760.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 84 Blast hits to 84 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 128.3 bits (321), Expect = 1.1e-29 Identity = 97/310 (31.29%), Postives = 161/310 (51.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|