Sed0016834 (gene) Chayote v1

Overview


Name	Sed0016834
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SKP1-like protein
Location	LG07: 38376692 .. 38377310 (-)
RNA-Seq Expression	Sed0016834
Synteny	Sed0016834

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAAAATCCTCTCTGCTTCTGCAACTCCGCCACCATGAGAACGATCACACTGAAATCCGCCGACGAGAAAACCTTCGAGGTCGATGAATCCATCGCGAATCAATCGGAAGTGATTCGCAAAATGCTCGAAGAATACAAAGAATCACCGTCGTCGTTGTCGTCGACCGGTTCGATTACGATTCCGCTGCCGAACGTGAAGGGGGGAATGCTGAGCATGGTGATCGAGTGGATCGCGAAGCACGTCGCCGAGCAGATGTCGGAAGACGAGCTTCGAAATTGGGAAACGGAGTTCGTGAATGTGGATCTGGATCTCCTCTATGAGATCATACTCGCCGCCGATTACCTCGAAGTCAGCGCGTTGTTTCACCGCGCCTGCAAGAAGGTCGCCGATCTCATCGTCGGCAAGTCGCCGGAGGAGATTCGCCGGACTTTCAACATCGAGAACGATTTCTCGCCGGAAGAGGAGGCCGACCTCCGCCGCCAGAATGCTTGGACCTTTGAGACCGATGCCACCACCAGCACCGGTCAATAGACACTTCTCATTCTACAGATTCTACCCATTTTATTTGGTTTCTTGATTTTCTTGTTCTTCGGAGTTTGTTTAGTTTTGGTTTTAG

mRNA sequence

CTAAAAAATCCTCTCTGCTTCTGCAACTCCGCCACCATGAGAACGATCACACTGAAATCCGCCGACGAGAAAACCTTCGAGGTCGATGAATCCATCGCGAATCAATCGGAAGTGATTCGCAAAATGCTCGAAGAATACAAAGAATCACCGTCGTCGTTGTCGTCGACCGGTTCGATTACGATTCCGCTGCCGAACGTGAAGGGGGGAATGCTGAGCATGGTGATCGAGTGGATCGCGAAGCACGTCGCCGAGCAGATGTCGGAAGACGAGCTTCGAAATTGGGAAACGGAGTTCGTGAATGTGGATCTGGATCTCCTCTATGAGATCATACTCGCCGCCGATTACCTCGAAGTCAGCGCGTTGTTTCACCGCGCCTGCAAGAAGGTCGCCGATCTCATCGTCGGCAAGTCGCCGGAGGAGATTCGCCGGACTTTCAACATCGAGAACGATTTCTCGCCGGAAGAGGAGGCCGACCTCCGCCGCCAGAATGCTTGGACCTTTGAGACCGATGCCACCACCAGCACCGGTCAATAGACACTTCTCATTCTACAGATTCTACCCATTTTATTTGGTTTCTTGATTTTCTTGTTCTTCGGAGTTTGTTTAGTTTTGGTTTTAG

Coding sequence (CDS)

ATGAGAACGATCACACTGAAATCCGCCGACGAGAAAACCTTCGAGGTCGATGAATCCATCGCGAATCAATCGGAAGTGATTCGCAAAATGCTCGAAGAATACAAAGAATCACCGTCGTCGTTGTCGTCGACCGGTTCGATTACGATTCCGCTGCCGAACGTGAAGGGGGGAATGCTGAGCATGGTGATCGAGTGGATCGCGAAGCACGTCGCCGAGCAGATGTCGGAAGACGAGCTTCGAAATTGGGAAACGGAGTTCGTGAATGTGGATCTGGATCTCCTCTATGAGATCATACTCGCCGCCGATTACCTCGAAGTCAGCGCGTTGTTTCACCGCGCCTGCAAGAAGGTCGCCGATCTCATCGTCGGCAAGTCGCCGGAGGAGATTCGCCGGACTTTCAACATCGAGAACGATTTCTCGCCGGAAGAGGAGGCCGACCTCCGCCGCCAGAATGCTTGGACCTTTGAGACCGATGCCACCACCAGCACCGGTCAATAG

Protein sequence

MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLSMVIEWIAKHVAEQMSEDELRNWETEFVNVDLDLLYEIILAADYLEVSALFHRACKKVADLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFETDATTSTGQ

Homology

[Close]

BLAST of Sed0016834 vs. NCBI nr
Match: XP_038892847.1 (SKP1-like protein 14 [Benincasa hispida])

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-41
Identity = 89/165 (53.94%), Postives = 127/165 (76.97%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           MRT+ L+S++ + F+V E IA QS V+R  LEE +      S++  +TIPLPN+ G +L+
Sbjct: 1   MRTVNLRSSENEVFKVREEIAKQSVVVRNFLEEDE------SNSDEVTIPLPNISGRILA 60

Query: 61  MVIEWIAKHVAEQMSEDELRNWETEFV-NVDLDLLYEIILAADYLEVSALFHRACKKVAD 120
           MVIEWI KHV E+++E  L++W+ +FV ++DLD L+E+I+AA+YLEV+ LFH+ C+ VAD
Sbjct: 61  MVIEWIVKHVEEKLTETALKDWQIKFVGDLDLDSLFELIMAANYLEVTDLFHQTCQSVAD 120

Query: 121 LIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFETDATTSTG 165
            I GKSPEEIR+ FNI NDF+PEEEA++RRQNAW FE+   +++G
Sbjct: 121 KIAGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFESGTGSTSG 159

[Close]

BLAST of Sed0016834 vs. NCBI nr
Match: TYK09255.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 6.9e-41
Identity = 91/164 (55.49%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           MRT+ L+S++ + F+V E +A QS V+R  LEE        S+   ITIPLPN+ G +L 
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE------DNSNGDEITIPLPNISGKLLG 60

Query: 61  MVIEWIAKHVAEQMSEDELRNWETEFV-NVDLDLLYEIILAADYLEVSALFHRACKKVAD 120
           MVIEWIA HV E+++E++L  W+T+F+ ++DLDLL+E+I+AA+YLEV+ LFH  C+ VAD
Sbjct: 61  MVIEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVAD 120

Query: 121 LIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFETDATTST 164
            I GKSPEEIR+ FNI NDF+PEEEA++RRQNAW FE   + ST
Sbjct: 121 KISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGST 158

[Close]

BLAST of Sed0016834 vs. NCBI nr
Match: XP_008446842.1 (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 6.9e-41
Identity = 91/164 (55.49%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           MRT+ L+S++ + F+V E +A QS V+R  LEE        S+   ITIPLPN+ G +L 
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE------DNSNGDEITIPLPNISGKLLG 60

Query: 61  MVIEWIAKHVAEQMSEDELRNWETEFV-NVDLDLLYEIILAADYLEVSALFHRACKKVAD 120
           MVIEWIA HV E+++E++L  W+T+F+ ++DLDLL+E+I+AA+YLEV+ LFH  C+ VAD
Sbjct: 61  MVIEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVAD 120

Query: 121 LIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFETDATTST 164
            I GKSPEEIR+ FNI NDF+PEEEA++RRQNAW FE   + ST
Sbjct: 121 KISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGST 158

[Close]

BLAST of Sed0016834 vs. NCBI nr
Match: KAA0034704.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 6.9e-41
Identity = 91/164 (55.49%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           MRT+ L+S++ + F+V E +A QS V+R  LEE        S+   ITIPLPN+ G +L 
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE------DNSNGDEITIPLPNISGKLLG 60

Query: 61  MVIEWIAKHVAEQMSEDELRNWETEFV-NVDLDLLYEIILAADYLEVSALFHRACKKVAD 120
           MVIEWIA HV E+++E++L  W+T+F+ ++DLDLL+E+I+AA+YLEV+ LFH  C+ VAD
Sbjct: 61  MVIEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVAD 120

Query: 121 LIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFETDATTST 164
            I GKSPEEIR+ FNI NDF+PEEEA++RRQNAW FE   + ST
Sbjct: 121 KISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGST 158

[Close]

BLAST of Sed0016834 vs. NCBI nr
Match: XP_004142439.1 (SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-38
Identity = 88/163 (53.99%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           MR + L+S++ + F+V E +A QS V+R  LEE        S+   ITIPLPN+ G +L 
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEE------DDSNNDEITIPLPNISGRLLG 60

Query: 61  MVIEWIAKHVAEQMSEDELRNWETEFV-NVDLDLLYEIILAADYLEVSALFHRACKKVAD 120
           MVIEWI  HV E+++E+ L  W+T+F+ ++DLDLL+E+I+AA+YLEV+ LFH  C+ VAD
Sbjct: 61  MVIEWIVMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVAD 120

Query: 121 LIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFETDATTS 163
            I GKSPEEIR+ FNI NDF+PEEEA++RRQNAW FE   + S
Sbjct: 121 KISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of Sed0016834 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-32
Identity = 75/177 (42.37%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           +R ITLKS+D + FE+DE++A +S+ I+ M+E+        +  G   IPLPNV   +LS
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIED------DCTDNG---IPLPNVTSKILS 63

Query: 61  MVIEWIAKH---------------------VAEQMSEDELRNWETEFVNVDLDLLYEIIL 120
            VIE+  +H                     VA   S+++L+ W++EF+ VD   L+++IL
Sbjct: 64  KVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLIL 123

Query: 121 AADYLEVSALFHRACKKVADLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
           AA+YL +  L    C+ VAD+I GK+PEEIR+TFNI+NDF+PEEE ++RR+N W FE
Sbjct: 124 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Sed0016834 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-31
Identity = 77/175 (44.00%), Postives = 111/175 (63.43%), Query Frame = 0


Query: 2   RTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLSM 61
           + ITLKS+D + FEV+E++A +S+ IR M+E+        +  G   IPLPNV   +LS 
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIED------DCADNG---IPLPNVNSKILSK 67

Query: 62  VIEWIAKHV------AEQMSED--------------ELRNWETEFVNVDLDLLYEIILAA 121
           VIE+  KHV      A + ++D              +L+NW+ +FV VD   L+++ILAA
Sbjct: 68  VIEYCNKHVHAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAA 127

Query: 122 DYLEVSALFHRACKKVADLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
           +YL +  L    C+ VAD+I GK+PEEIR+TFNI+NDF+PEEE ++RR+N W FE
Sbjct: 128 NYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of Sed0016834 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-31
Identity = 77/174 (44.25%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 4   ITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLSMVI 63
           ITL+S + + FEV E++A +S+ IR M+E+        + TG   IPLPNV   +LS VI
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIED------KCADTG---IPLPNVSAKILSKVI 70

Query: 64  EWIAKHV---------------------AEQMSEDELRNWETEFVNVDLDLLYEIILAAD 123
           E+ +KHV                     A +  EDEL+ ++ EFV VD   L+++ILAA+
Sbjct: 71  EYCSKHVEARGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAAN 130

Query: 124 YLEVSALFHRACKKVADLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
           YL +  L    C+ VAD+I GK+PEEIR+TFNI+NDF+PEEE ++RR+N W FE
Sbjct: 131 YLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of Sed0016834 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.4e-30
Identity = 73/167 (43.71%), Postives = 108/167 (64.67%), Query Frame = 0


Query: 2   RTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLSM 61
           + I LKS+D ++FE++E++A +S+ I+ M+E+        +  G   IPLPNV G +L+ 
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIED------DCADNG---IPLPNVTGAILAK 65

Query: 62  VIEWIAKHV---AE---------QMSEDELRNWETEFVNVDLDLLYEIILAADYLEVSAL 121
           VIE+  KHV   AE             DEL+NW++EFV VD   L+++ILAA+YL +  L
Sbjct: 66  VIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGL 125

Query: 122 FHRACKKVADLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
               CK VAD + GK+PE++R  FNI+ND++PEEEA++R +N W FE
Sbjct: 126 LDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Sed0016834 vs. ExPASy Swiss-Prot
Match: B0Y3B5 (E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=sconC PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 74/166 (44.58%), Postives = 103/166 (62.05%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           M T+TL S+D     VD  +A +S +I+ MLE+  ES  +        IP+PNV   +L 
Sbjct: 1   MTTVTLTSSDGVDITVDRDVAERSILIKNMLEDLGESDEA--------IPIPNVNEVVLK 60

Query: 61  MVIEWIAKHVAEQMS---EDELR-------NWETEFVNVDLDLLYEIILAADYLEVSALF 120
            VIEW   H  +  S   +D+ R        W+ +F+ VD ++L+EIILAA+YL++ AL 
Sbjct: 61  KVIEWCTHHKNDPPSTGDDDDSRRKTTDIDEWDQKFMQVDQEMLFEIILAANYLDIKALL 120

Query: 121 HRACKKVADLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
              CK VA++I GKSPEEIR+TFNI+NDF+PEEE  +RR+N W  E
Sbjct: 121 DVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEEDQIRRENEWAEE 158

[Close]

BLAST of Sed0016834 vs. ExPASy TrEMBL
Match: A0A5A7SU15 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007240 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.4e-41
Identity = 91/164 (55.49%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           MRT+ L+S++ + F+V E +A QS V+R  LEE        S+   ITIPLPN+ G +L 
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE------DNSNGDEITIPLPNISGKLLG 60

Query: 61  MVIEWIAKHVAEQMSEDELRNWETEFV-NVDLDLLYEIILAADYLEVSALFHRACKKVAD 120
           MVIEWIA HV E+++E++L  W+T+F+ ++DLDLL+E+I+AA+YLEV+ LFH  C+ VAD
Sbjct: 61  MVIEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVAD 120

Query: 121 LIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFETDATTST 164
            I GKSPEEIR+ FNI NDF+PEEEA++RRQNAW FE   + ST
Sbjct: 121 KISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGST 158

[Close]

BLAST of Sed0016834 vs. ExPASy TrEMBL
Match: A0A5D3CCN6 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002490 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.4e-41
Identity = 91/164 (55.49%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           MRT+ L+S++ + F+V E +A QS V+R  LEE        S+   ITIPLPN+ G +L 
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE------DNSNGDEITIPLPNISGKLLG 60

Query: 61  MVIEWIAKHVAEQMSEDELRNWETEFV-NVDLDLLYEIILAADYLEVSALFHRACKKVAD 120
           MVIEWIA HV E+++E++L  W+T+F+ ++DLDLL+E+I+AA+YLEV+ LFH  C+ VAD
Sbjct: 61  MVIEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVAD 120

Query: 121 LIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFETDATTST 164
            I GKSPEEIR+ FNI NDF+PEEEA++RRQNAW FE   + ST
Sbjct: 121 KISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGST 158

[Close]

BLAST of Sed0016834 vs. ExPASy TrEMBL
Match: A0A1S3BGP6 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.4e-41
Identity = 91/164 (55.49%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           MRT+ L+S++ + F+V E +A QS V+R  LEE        S+   ITIPLPN+ G +L 
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE------DNSNGDEITIPLPNISGKLLG 60

Query: 61  MVIEWIAKHVAEQMSEDELRNWETEFV-NVDLDLLYEIILAADYLEVSALFHRACKKVAD 120
           MVIEWIA HV E+++E++L  W+T+F+ ++DLDLL+E+I+AA+YLEV+ LFH  C+ VAD
Sbjct: 61  MVIEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVAD 120

Query: 121 LIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFETDATTST 164
            I GKSPEEIR+ FNI NDF+PEEEA++RRQNAW FE   + ST
Sbjct: 121 KISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGST 158

[Close]

BLAST of Sed0016834 vs. ExPASy TrEMBL
Match: A0A0A0KRJ8 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 5.4e-39
Identity = 88/163 (53.99%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           MR + L+S++ + F+V E +A QS V+R  LEE        S+   ITIPLPN+ G +L 
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEE------DDSNNDEITIPLPNISGRLLG 60

Query: 61  MVIEWIAKHVAEQMSEDELRNWETEFV-NVDLDLLYEIILAADYLEVSALFHRACKKVAD 120
           MVIEWI  HV E+++E+ L  W+T+F+ ++DLDLL+E+I+AA+YLEV+ LFH  C+ VAD
Sbjct: 61  MVIEWIVMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVAD 120

Query: 121 LIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFETDATTS 163
            I GKSPEEIR+ FNI NDF+PEEEA++RRQNAW FE   + S
Sbjct: 121 KISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of Sed0016834 vs. ExPASy TrEMBL
Match: A0A6J1CDL6 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111010258 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 6.6e-37
Identity = 84/157 (53.50%), Postives = 112/157 (71.34%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           MR I LK+ D + +EV+E+IA QS VIR  LE++            + IPL  V   ML 
Sbjct: 1   MRRILLKTCDNQIYEVEEAIAKQSGVIRNFLEDF--------DGDCVEIPLLKVNERMLK 60

Query: 61  MVIEWIAKHVAEQMSEDELRNWETEFVNV-DLDLLYEIILAADYLEVSALFHRACKKVAD 120
           +V+EW A H  E++ E EL++WE++FV + DLD LYE+++AA+YLEV  L HR CKKVAD
Sbjct: 61  VVMEWCAMHAGEELEEKELQDWESKFVAMDDLDFLYEVLMAANYLEVVDLVHRLCKKVAD 120

Query: 121 LIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
           +I GK PEEIR+ FNIENDF+PEEEA+LR++NAWT +
Sbjct: 121 IIAGKQPEEIRKIFNIENDFTPEEEAELRKRNAWTLD 149

[Close]

BLAST of Sed0016834 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-33
Identity = 75/177 (42.37%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 1   MRTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLS 60
           +R ITLKS+D + FE+DE++A +S+ I+ M+E+        +  G   IPLPNV   +LS
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIED------DCTDNG---IPLPNVTSKILS 63

Query: 61  MVIEWIAKH---------------------VAEQMSEDELRNWETEFVNVDLDLLYEIIL 120
            VIE+  +H                     VA   S+++L+ W++EF+ VD   L+++IL
Sbjct: 64  KVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLIL 123

Query: 121 AADYLEVSALFHRACKKVADLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
           AA+YL +  L    C+ VAD+I GK+PEEIR+TFNI+NDF+PEEE ++RR+N W FE
Sbjct: 124 AANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Sed0016834 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-31
Identity = 73/167 (43.71%), Postives = 108/167 (64.67%), Query Frame = 0


Query: 2   RTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLSM 61
           + I LKS+D ++FE++E++A +S+ I+ M+E+        +  G   IPLPNV G +L+ 
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIED------DCADNG---IPLPNVTGAILAK 65

Query: 62  VIEWIAKHV---AE---------QMSEDELRNWETEFVNVDLDLLYEIILAADYLEVSAL 121
           VIE+  KHV   AE             DEL+NW++EFV VD   L+++ILAA+YL +  L
Sbjct: 66  VIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGL 125

Query: 122 FHRACKKVADLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
               CK VAD + GK+PE++R  FNI+ND++PEEEA++R +N W FE
Sbjct: 126 LDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Sed0016834 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-30
Identity = 72/166 (43.37%), Postives = 108/166 (65.06%), Query Frame = 0


Query: 2   RTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLSM 61
           + I LKS+D ++FEV+E++A +S+ I  M+E+           G   +PLPNV   +L+ 
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVED------DCVDNG---VPLPNVTSKILAK 63

Query: 62  VIEWIAKHV------AEQM-----SEDELRNWETEFVNVDLDLLYEIILAADYLEVSALF 121
           VIE+  +HV      AE +     S+D+L+ W+ +F+ +D   L+E+ILAA+YL +  L 
Sbjct: 64  VIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLL 123

Query: 122 HRACKKVADLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
              C+ VAD+I GK+PEEIR TFNI+NDF+PEEE ++RR+N W FE
Sbjct: 124 DLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Sed0016834 vs. TAIR 10
Match: AT3G21850.1 (SKP1-like 9 )

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-30
Identity = 70/158 (44.30%), Postives = 102/158 (64.56%), Query Frame = 0


Query: 2   RTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLSM 61
           + I LKS+D  +FEV+E  A Q ++I   + E     +  +  G   IPLPNV G +L+M
Sbjct: 4   KKIILKSSDGHSFEVEEEAARQCQIIIAHMSE-----NDCTDNG---IPLPNVTGKILAM 63

Query: 62  VIEWIAKH---VAEQMSEDELRNWETEFVNVDLDLLYEIILAADYLEVSALFHRACKKVA 121
           VIE+  KH    A   S+D+L+ W+ EF+  D   ++++I AA+YL + +LF  AC+ VA
Sbjct: 64  VIEYCNKHHVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVA 123

Query: 122 DLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
           ++I G +PE+IR  FNIEND +PEEEA +RR+N W FE
Sbjct: 124 EIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153

[Close]

BLAST of Sed0016834 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-30
Identity = 69/158 (43.67%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 2   RTITLKSADEKTFEVDESIANQSEVIRKMLEEYKESPSSLSSTGSITIPLPNVKGGMLSM 61
           + I L S+D ++FEV+E++A QS+ I  M+E+            +  IPL NV+  +L  
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVED---------DCVADGIPLANVESKILVK 63

Query: 62  VIEWIAKH---VAEQMSEDELRNWETEFVNVDLDLLYEIILAADYLEVSALFHRACKKVA 121
           VIE+  KH    A  +SE++L NW+ +F++++   ++E+ILAA+YL + +L    C+ VA
Sbjct: 64  VIEYCKKHHVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVA 123

Query: 122 DLIVGKSPEEIRRTFNIENDFSPEEEADLRRQNAWTFE 157
           D+I GK+PEEIR TFNIENDF+PEEE  +R++N W FE
Sbjct: 124 DMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

The following BLAST results are available for this feature:

BLAST of Sed0016834 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892847.1	2.4e-41	53.94	SKP1-like protein 14 [Benincasa hispida]	[more]
TYK09255.1	6.9e-41	55.49	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_008446842.1	6.9e-41	55.49	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]
KAA0034704.1	6.9e-41	55.49	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_004142439.1	1.1e-38	53.99	SKP1-like protein 14 [Cucumis sativus]	[more]

BLAST of Sed0016834 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW7	4.7e-32	42.37	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q6PL11	1.4e-31	44.00	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	3.0e-31	44.25	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
Q9LNT9	3.4e-30	43.71	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]
B0Y3B5	1.7e-29	44.58	E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya fumigata (strain CE...	[more]

BLAST of Sed0016834 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SU15	3.4e-41	55.49	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G...	[more]
A0A5D3CCN6	3.4e-41	55.49	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]
A0A1S3BGP6	3.4e-41	55.49	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1	[more]
A0A0A0KRJ8	5.4e-39	53.99	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1	[more]
A0A6J1CDL6	6.6e-37	53.50	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111010258 PE=3 SV=1	[more]

BLAST of Sed0016834 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	3.3e-33	42.37	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G20140.1	2.4e-31	43.71	SKP1-like 4	[more]
AT1G75950.1	1.5e-30	43.37	S phase kinase-associated protein 1	[more]
AT3G21850.1	1.5e-30	44.30	SKP1-like 9	[more]
AT4G34210.1	2.0e-30	43.67	SKP1-like 11	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 1..106 e-value: 1.3E-26 score: 104.5
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..157 e-value: 3.0E-54 score: 185.5
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 2..72
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 3..70 e-value: 3.6E-16 score: 59.1
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..157 e-value: 6.3E-50 score: 167.1
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 2..156
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 109..153 e-value: 5.1E-21 score: 74.5
None	No IPR available	PANTHER	PTHR11165:SF114	SKP1-LIKE PROTEIN 13	coord: 2..156
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 79..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016834.1	Sed0016834.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0097602	cullin family protein binding