Sed0016780 (gene) Chayote v1

Overview
NameSed0016780
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
LocationLG05: 36244680 .. 36248335 (-)
RNA-Seq ExpressionSed0016780
SyntenySed0016780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTATTTTCTCCTTGTTCCAGTCCTCTTATTAAAATGGAATACACAAATCTAGAAAATAAAAACATAGACTATGAAAAGAAAATGAATTAATTAAGTAAGAAGCAAAGGATGAAAAGTGGGAAGAAATCAAAATGAGAAGAGCAATCTTGAATGGAAGGCTAAAAATGGAGGGAAAAGAATTACCTCAACAAATGGAAAAGGATGATATCCAGATTTCCAACCACTCAACTTCTGGACTACGTGCTCTCCTAATTACCAATCACTCCCATTCCCTACCTTAACCTCTCTCGGTAATTACATCGAACACTTCGCGTGCACACCATTTCCAAATCGCAATCGCAATCGCCAATGGCTTCTTCTCTCAGCCTCAAATCCTCCGATTTTGCCATCGCTGCTCGCGGCCGGGTTCTCCCGTCGATCGCCAGGACTAACTCCTCGATCAAAGTAGTCGCCAGCGGCGGCAAGAAAATCAAAACCGATACACCCTACGGTACCCTTCCTCTCTATTCATCATATACTGAATTCGGTTCAGATTTGAGAATTTGTGGCGGTTATTTATTGAAATTTTGGCCGATTATGGGGGATTTATTGCAGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGACGGTAAGAGATTAAGTTTCCGATTCGCTGTTGTGTTCAAATTCTGATCATTATTTGCTTCTTTGACTTTCTCATCTTTCCCGCCATAATTAATTTTTTAAATCACGGGTTTTCAGTTACTTTCCAGTTATATTCCTAAATTAATTAAACATTTTTATCCTTTTTTGTATTAATAGTTTTTTAGTTAGATAATGAAATGTTGCCTTAACTAATTTTTTTATTTTAATTTCTAATATATCAATGAAATGATGATTTTTTTTTTTTTTTTGAAAAGTGATGAAATGATGATTTTAAGAGTGTGAAGTAGTAATTTTTTGTATACTAGTATATAATGATGCTGATGTCCTCTTTGACATTTTATGTCCATTTTTTTAGTTTTTTTTTATGGCGAAGGCTAAAATTTACATTTACAGATTTACTCCTTGTAATTCATGAATTAAAATAGTATTTTTAACTATAATTTTTCATAAATTTTAGAATATATTCTTGGCATTTCTCGTAGTAATTTTTTATTTGATAGTTTGTATTAAAATTATAAAATGCAATAAATATTCTATTTAAAAATTCATGAAGGAAGTTGAACAAACTCAAAAAATAAATAGATTAAAATAGTATTCCAAAATAAAGAGACTAAAATAGTATTTTAATTTTTTTTCAATAAAAACAATAGTTTAAATCTAAGCTATGTGCATAAATTCTTTAATTTAATTATTGGTGAACTCAAAAAAATATATTTTAATCGTTATTTAATTTATATTTTAACATGACATAATGTTGTACTCACTTGAATGAAAATTGCAACACTTTTAAAATTTAACGTTAAAATTACATCACTCATCAAAATTTGAAGTGAGATTTTTAAAGCATGCAGATGAAATTGACACAACTTCAAGTTTAAATAAAAAATATTATTTTCACTAATTTTTTAACAAAAAATAAAATTATTTTCTGTCTCACTCTCTTTTTCTTTTCTTTTTTTTTTAAATATATATACATATACACACGAATATGTTTCTTTTTTAGTACTTATATATATATATATATATATATATATATATATATATATATATATATCAACTATTGCTGGACTCACACACACAAAAAAAAAACTTTTAATTGCATTCTCTACTAAAATAATTTAAGTATAGGCTAGGAAATTTTTATACTATGAAAGTATTATTCATTGAGAATGATTCGAAAAGTCTCAATTGTAACTATAGGATTATTATTATTATTATTATTATTTATTATTATTATTTATTATTATTATTTTTTAATTTAGGGCAAGGGAGTATACCAATATGTGGACAAATACGGTGCCAATGTTGATGGATACAGGTACAATACCTTTTACCTTTTTCTTCATTTGACAAGCATTTTTATGCACTATAAAAAAAATAGTATTAAATTATAAATTCGGTCTTTTTATTTTGAAAAATGTAAAATTTAATTTAAATATATATAATATTTGAAGTTAGGATATAATTTTCATAATTTGATCAAACTTAAGAAAACAATTTATATTATTAATAATCGTAAACAAAACAAGAAGCTATAGTTGCTTAACTATGTGTAAATGATGTAGTCTTTTATATTCTTATTGAAAATGTAGGTTAAATAGTTAGATTGAATAAAATTAAGTTCCAATTTTCAATTTTGAATTACTAATTTTCTAATTTTTAATTTTATCTAATCATTTACTTCTTCTTTTTTAATCATTTACTTAAGTCCTTGTAAATAATTAATTATCCTAAATTTAATTTTTCTGCAATTATGAATGTGATAAACTCAAATACAACTTTTAAAACTATATAAACTAAAATTCATCTTGGAGTGATCTAGGTCAAGGTTTCGAATAATTGAGAGGGGTTGAATTTTCTTGAAATGATCAAATTTATAATTTCAACATAAAAATCTTAGAATTGCTTACTGGTATTAGAGTTTTGATGTGTATAATTTGGAATGAAAATATCAGATTATATATTTGTTATCTTGTGTGCTCTAGTTTTAAAAGCTTAAATTTAATTTTTGGGCTTTTCTTGCTTTTCTTTTTTACTTAATGATTATTTGTATTTTACAGTCCTATCTACAACACTGATGAATGGTCTGCTACTGGTGATGTATATGCTGGGGGTAAGAAATTGTAACCAATACTTTCTTACCATTTCAATTTCTACATGTTTGGTCAATGAGGAAAAAAAGAACAATATTGAAGCTTTTTCTTCTTTCTTTCTTTATTTAATTGTTTAATTATTGATAGACCATTTCAAATAGGTTATTAGCAATAAAGAATTGTTTAGGTTATGCTATATCCATTTTCGCTAAATATAAAAATATGAAATTTTAAAGTTAGAGAATTTTCAGATTTACCTTTTTTACTTTTTTTTTTTCTTTTCAATTTTGTGATTGGATTACTATAAATTGAAATCGTCACAGTTTTCCACTAAAAAAACAATTTTTTTTTTAATATTCACCCAACAATTCTAAACTTTTAACATTAAATTCTAAACACTAAATCTTGAATTCTAAACCCTCAACTTTAAATCATAAACATTAAATCTTAATAGAAAAGATATTTTCATAACATCTTACTTTAACATTTAAGATAAAAAATATATAATATTTAATATTTAATACTTAAGTGAAAATAAAATCTTATTTTTATTTATATACATTTTTGGAAATGACATTTTAAAAATATGGAATGTGTATTTTAGTATACTCATAGATAAAAGCCAAATTTGTAAAAATATGACATGTATTTTTTTTCACAATTTTGAATATTGAATTGCAGGTACAACGGGGCTGGCTATTTGGGCCGTGACTCTATTTGGGCTTCTTGCTGGAGGGGCCCTTCTTGTCTACAACACAAGTGCTCTGGCCCAGTGATCTCATACACAGCCCATTATCCATTCCTTGCCTATATATATACTATGAGCCCCTTTGTAATCTTTCATATTTAAAACCTAAACTCATTTGAATACACTCATTATGTTCTGACAAAA

mRNA sequence

GCTATTTTCTCCTTGTTCCAGTCCTCTTATTAAAATGGAATACACAAATCTAGAAAATAAAAACATAGACTATGAAAAGAAAATGAATTAATTAAGTAAGAAGCAAAGGATGAAAAGTGGGAAGAAATCAAAATGAGAAGAGCAATCTTGAATGGAAGGCTAAAAATGGAGGGAAAAGAATTACCTCAACAAATGGAAAAGGATGATATCCAGATTTCCAACCACTCAACTTCTGGACTACGTGCTCTCCTAATTACCAATCACTCCCATTCCCTACCTTAACCTCTCTCGGTAATTACATCGAACACTTCGCGTGCACACCATTTCCAAATCGCAATCGCAATCGCCAATGGCTTCTTCTCTCAGCCTCAAATCCTCCGATTTTGCCATCGCTGCTCGCGGCCGGGTTCTCCCGTCGATCGCCAGGACTAACTCCTCGATCAAAGTAGTCGCCAGCGGCGGCAAGAAAATCAAAACCGATACACCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGACGGGCAAGGGAGTATACCAATATGTGGACAAATACGGTGCCAATGTTGATGGATACAGTCCTATCTACAACACTGATGAATGGTCTGCTACTGGTGATGTATATGCTGGGGGTACAACGGGGCTGGCTATTTGGGCCGTGACTCTATTTGGGCTTCTTGCTGGAGGGGCCCTTCTTGTCTACAACACAAGTGCTCTGGCCCAGTGATCTCATACACAGCCCATTATCCATTCCTTGCCTATATATATACTATGAGCCCCTTTGTAATCTTTCATATTTAAAACCTAAACTCATTTGAATACACTCATTATGTTCTGACAAAA

Coding sequence (CDS)

ATGGCTTCTTCTCTCAGCCTCAAATCCTCCGATTTTGCCATCGCTGCTCGCGGCCGGGTTCTCCCGTCGATCGCCAGGACTAACTCCTCGATCAAAGTAGTCGCCAGCGGCGGCAAGAAAATCAAAACCGATACACCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGACGGGCAAGGGAGTATACCAATATGTGGACAAATACGGTGCCAATGTTGATGGATACAGTCCTATCTACAACACTGATGAATGGTCTGCTACTGGTGATGTATATGCTGGGGGTACAACGGGGCTGGCTATTTGGGCCGTGACTCTATTTGGGCTTCTTGCTGGAGGGGCCCTTCTTGTCTACAACACAAGTGCTCTGGCCCAGTGA

Protein sequence

MASSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ
Homology
BLAST of Sed0016780 vs. NCBI nr
Match: XP_038899014.1 (photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 217.6 bits (553), Expect = 6.4e-53
Identity = 116/139 (83.45%), Postives = 121/139 (87.05%), Query Frame = 0

Query: 2   ASSLSLKSSDFAI------AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNL 61
           ASSLSLK S+FA+        R   +PS+ART+SS KV ASGGKKIKTD PYGIGGGMNL
Sbjct: 8   ASSLSLKPSNFAVQRSAADLRRHVPIPSLARTSSSFKVEASGGKKIKTDKPYGIGGGMNL 67

Query: 62  RNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTL 121
           RNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS TGDVYA GTTGLAIWAVTL
Sbjct: 68  RNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYAAGTTGLAIWAVTL 127

Query: 122 FGLLAGGALLVYNTSALAQ 135
            GLLAGGALLVYNTSALAQ
Sbjct: 128 LGLLAGGALLVYNTSALAQ 146

BLAST of Sed0016780 vs. NCBI nr
Match: CAB4277098.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-49
Identity = 108/135 (80.00%), Postives = 119/135 (88.15%), Query Frame = 0

Query: 3   SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGV 62
           +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G 
Sbjct: 7   ASVSLKPSPFTVEKSAVRG--LPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMNLKDGK 66

Query: 63  DASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLL 122
           DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GDVYAGGTTGLAIWAVTL G+L
Sbjct: 67  DASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGTTGLAIWAVTLLGIL 126

Query: 123 AGGALLVYNTSALAQ 135
           AGGALLVYNTSAL+Q
Sbjct: 127 AGGALLVYNTSALSQ 139

BLAST of Sed0016780 vs. NCBI nr
Match: AFK39810.1 (unknown [Lotus japonicus] >AFK44073.1 unknown [Lotus japonicus])

HSP 1 Score: 205.3 bits (521), Expect = 3.3e-49
Identity = 105/133 (78.95%), Postives = 119/133 (89.47%), Query Frame = 0

Query: 3   SSLSLKSSDFAIAARG-RVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDA 62
           +S+SLK + F++     R LPS++R+++S +VVASGGKKIKTDTPYG GGGMNLRNGVDA
Sbjct: 7   ASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDA 66

Query: 63  SGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLLAG 122
           SGRKP GKGVYQYVDKYGANVDGYSPIY+T +WS TGDVYAGGTTGLAIWAVTL GLLAG
Sbjct: 67  SGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAG 126

Query: 123 GALLVYNTSALAQ 135
           GALLVYNTSAL+Q
Sbjct: 127 GALLVYNTSALSQ 139

BLAST of Sed0016780 vs. NCBI nr
Match: VVA34501.1 (PREDICTED: photosystem II [Prunus dulcis])

HSP 1 Score: 204.1 bits (518), Expect = 7.3e-49
Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0

Query: 3   SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGV 62
           +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G 
Sbjct: 42  ASVSLKPSPFTVEKSAVRG--LPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMNLKDGK 101

Query: 63  DASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLL 122
           DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GDVYAGG TGLAIWAVTL G+L
Sbjct: 102 DASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGATGLAIWAVTLLGIL 161

Query: 123 AGGALLVYNTSALAQ 135
           AGGALLVYNTSAL+Q
Sbjct: 162 AGGALLVYNTSALSQ 174

BLAST of Sed0016780 vs. NCBI nr
Match: XP_007212214.1 (photosystem II 10 kDa polypeptide, chloroplastic [Prunus persica] >XP_034212001.1 photosystem II 10 kDa polypeptide, chloroplastic [Prunus dulcis] >ONI12091.1 hypothetical protein PRUPE_4G143700 [Prunus persica])

HSP 1 Score: 204.1 bits (518), Expect = 7.3e-49
Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0

Query: 3   SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGV 62
           +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G 
Sbjct: 7   ASVSLKPSPFTVEKSAVRG--LPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMNLKDGK 66

Query: 63  DASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLL 122
           DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GDVYAGG TGLAIWAVTL G+L
Sbjct: 67  DASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGATGLAIWAVTLLGIL 126

Query: 123 AGGALLVYNTSALAQ 135
           AGGALLVYNTSAL+Q
Sbjct: 127 AGGALLVYNTSALSQ 139

BLAST of Sed0016780 vs. ExPASy Swiss-Prot
Match: P06183 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN=PSBR PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.4e-49
Identity = 103/132 (78.03%), Postives = 112/132 (84.85%), Query Frame = 0

Query: 3   SSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDAS 62
           SSLSLK +        + LPS+AR++SS KVVASG KK+KTD PYGI G M LR+GVDAS
Sbjct: 7   SSLSLKPTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDAS 66

Query: 63  GRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLLAGG 122
           GRKP GKGVYQYVDKYGANVDGYSPIYNTDEWS +GDVY GGTTGLAIWAVTL G+LAGG
Sbjct: 67  GRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGG 126

Query: 123 ALLVYNTSALAQ 135
           ALLVYNTSALAQ
Sbjct: 127 ALLVYNTSALAQ 138

BLAST of Sed0016780 vs. ExPASy Swiss-Prot
Match: Q40163 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBR PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.0e-48
Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 0

Query: 3   SSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDAS 62
           SSLSLK +        + LPS+ R++SS KVVASG KK+KTD PYGI G M LR+GVDAS
Sbjct: 7   SSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDAS 66

Query: 63  GRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLLAGG 122
           GRKP GKGVYQYVDKYGANVDGYSPIYNTDEWS +GDVY GGTTGLAIWAVTL G+LAGG
Sbjct: 67  GRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGG 126

Query: 123 ALLVYNTSALAQ 135
           ALLVYNTSALAQ
Sbjct: 127 ALLVYNTSALAQ 138

BLAST of Sed0016780 vs. ExPASy Swiss-Prot
Match: P10690 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBR PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.8e-48
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 0

Query: 3   SSLSLKSSDFAIAARGRV--LPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVD 62
           SSLSLK S F +  +  V  LPS++R+++S  V ASG KKIK D P GIGGGM LR+GVD
Sbjct: 7   SSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVD 66

Query: 63  ASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLLA 122
           +SGRKPTGKGVYQ+VDKYGANVDGYSPIYN +EW+ TGDVYAGGTTGL IWAVTL GLLA
Sbjct: 67  SSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLA 126

Query: 123 GGALLVYNTSALAQ 135
           GGALLVYNTSALAQ
Sbjct: 127 GGALLVYNTSALAQ 140

BLAST of Sed0016780 vs. ExPASy Swiss-Prot
Match: Q40519 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBR PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.7e-46
Identity = 100/138 (72.46%), Postives = 118/138 (85.51%), Query Frame = 0

Query: 1   MASS-LSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLR 60
           MAS+ +SLK + F++   A +G  LPS+AR++SS +V ASG KK+KTD PYGI G M+LR
Sbjct: 1   MASTVMSLKPAPFSVEKTAVKG--LPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLR 60

Query: 61  NGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLF 120
           +GVDASGRK  GKGVYQ+VDKYGANVDGYSPIYNTD+WS +GDVY GGTTGLAIWAVTL 
Sbjct: 61  DGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLV 120

Query: 121 GLLAGGALLVYNTSALAQ 135
           G+LAGGALLV+NTSALAQ
Sbjct: 121 GILAGGALLVFNTSALAQ 136

BLAST of Sed0016780 vs. ExPASy Swiss-Prot
Match: P27202 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBR PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.8e-45
Identity = 99/137 (72.26%), Postives = 112/137 (81.75%), Query Frame = 0

Query: 1   MASSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRN 60
           M SS++LK + F +   AARG  LPS+ R   S K+VASG KKIKTD P+GI G M+LR+
Sbjct: 6   MLSSVTLKPAGFTVEKTAARG--LPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRD 65

Query: 61  GVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFG 120
           GVDASGRK  G GVY+YVDKYGANVDGYSPIYN +EWSA+GDVY GG TGLAIWAVTL G
Sbjct: 66  GVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAG 125

Query: 121 LLAGGALLVYNTSALAQ 135
           +LAGGALLVYNTSALAQ
Sbjct: 126 ILAGGALLVYNTSALAQ 140

BLAST of Sed0016780 vs. ExPASy TrEMBL
Match: A0A6J5USX5 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS26567 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 9.4e-50
Identity = 108/135 (80.00%), Postives = 119/135 (88.15%), Query Frame = 0

Query: 3   SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGV 62
           +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G 
Sbjct: 7   ASVSLKPSPFTVEKSAVRG--LPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMNLKDGK 66

Query: 63  DASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLL 122
           DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GDVYAGGTTGLAIWAVTL G+L
Sbjct: 67  DASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGTTGLAIWAVTLLGIL 126

Query: 123 AGGALLVYNTSALAQ 135
           AGGALLVYNTSAL+Q
Sbjct: 127 AGGALLVYNTSALSQ 139

BLAST of Sed0016780 vs. ExPASy TrEMBL
Match: I3SHR8 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.6e-49
Identity = 105/133 (78.95%), Postives = 119/133 (89.47%), Query Frame = 0

Query: 3   SSLSLKSSDFAIAARG-RVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDA 62
           +S+SLK + F++     R LPS++R+++S +VVASGGKKIKTDTPYG GGGMNLRNGVDA
Sbjct: 7   ASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDA 66

Query: 63  SGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLLAG 122
           SGRKP GKGVYQYVDKYGANVDGYSPIY+T +WS TGDVYAGGTTGLAIWAVTL GLLAG
Sbjct: 67  SGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAG 126

Query: 123 GALLVYNTSALAQ 135
           GALLVYNTSAL+Q
Sbjct: 127 GALLVYNTSALSQ 139

BLAST of Sed0016780 vs. ExPASy TrEMBL
Match: M5WVP2 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus persica OX=3760 GN=PRUPE_4G143700 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.6e-49
Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0

Query: 3   SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGV 62
           +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G 
Sbjct: 7   ASVSLKPSPFTVEKSAVRG--LPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMNLKDGK 66

Query: 63  DASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLL 122
           DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GDVYAGG TGLAIWAVTL G+L
Sbjct: 67  DASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGATGLAIWAVTLLGIL 126

Query: 123 AGGALLVYNTSALAQ 135
           AGGALLVYNTSAL+Q
Sbjct: 127 AGGALLVYNTSALSQ 139

BLAST of Sed0016780 vs. ExPASy TrEMBL
Match: A0A5E4G3Z3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus dulcis OX=3755 GN=ALMOND_2B031350 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.6e-49
Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0

Query: 3   SSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGV 62
           +S+SLK S F +   A RG  LPS+ART+SS KV ASGGKKIKTDTPYG GGGMNL++G 
Sbjct: 42  ASVSLKPSPFTVEKSAVRG--LPSLARTSSSFKVQASGGKKIKTDTPYGTGGGMNLKDGK 101

Query: 63  DASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLL 122
           DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWS +GDVYAGG TGLAIWAVTL G+L
Sbjct: 102 DASGRKPTGKGVYQFVDKYGANVDGYSPIYNRDEWSPSGDVYAGGATGLAIWAVTLLGIL 161

Query: 123 AGGALLVYNTSALAQ 135
           AGGALLVYNTSAL+Q
Sbjct: 162 AGGALLVYNTSALSQ 174

BLAST of Sed0016780 vs. ExPASy TrEMBL
Match: A0A1U7Z3M3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104588920 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.9e-49
Identity = 106/132 (80.30%), Postives = 114/132 (86.36%), Query Frame = 0

Query: 3   SSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDAS 62
           SSLSLK S F   +  R LPS+AR +SS KV ASGGKKIKT+TPYG GGGMNL+NG+DAS
Sbjct: 7   SSLSLKPSPFLEKSAVRGLPSLARPSSSFKVQASGGKKIKTNTPYGPGGGMNLKNGLDAS 66

Query: 63  GRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLLAGG 122
           GRKPTGKGVYQ+VDKYGANVDGYSPIY  DEWS +GDVY GGTTGLAIWAVTL GLL GG
Sbjct: 67  GRKPTGKGVYQFVDKYGANVDGYSPIYTPDEWSPSGDVYVGGTTGLAIWAVTLAGLLLGG 126

Query: 123 ALLVYNTSALAQ 135
           ALLVYNTSALAQ
Sbjct: 127 ALLVYNTSALAQ 138

BLAST of Sed0016780 vs. TAIR 10
Match: AT1G79040.1 (photosystem II subunit R )

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-46
Identity = 99/137 (72.26%), Postives = 112/137 (81.75%), Query Frame = 0

Query: 1   MASSLSLKSSDFAI---AARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRN 60
           M SS++LK + F +   AARG  LPS+ R   S K+VASG KKIKTD P+GI G M+LR+
Sbjct: 6   MLSSVTLKPAGFTVEKTAARG--LPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRD 65

Query: 61  GVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFG 120
           GVDASGRK  G GVY+YVDKYGANVDGYSPIYN +EWSA+GDVY GG TGLAIWAVTL G
Sbjct: 66  GVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAG 125

Query: 121 LLAGGALLVYNTSALAQ 135
           +LAGGALLVYNTSALAQ
Sbjct: 126 ILAGGALLVYNTSALAQ 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038899014.16.4e-5383.45photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida][more]
CAB4277098.11.9e-4980.00unnamed protein product [Prunus armeniaca][more]
AFK39810.13.3e-4978.95unknown [Lotus japonicus] >AFK44073.1 unknown [Lotus japonicus][more]
VVA34501.17.3e-4979.26PREDICTED: photosystem II [Prunus dulcis][more]
XP_007212214.17.3e-4979.26photosystem II 10 kDa polypeptide, chloroplastic [Prunus persica] >XP_034212001.... [more]
Match NameE-valueIdentityDescription
P061833.4e-4978.03Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN... [more]
Q401631.0e-4877.27Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081... [more]
P106903.8e-4875.37Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea OX=3562 GN... [more]
Q405192.7e-4672.46Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN... [more]
P272021.8e-4572.26Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Match NameE-valueIdentityDescription
A0A6J5USX59.4e-5080.00Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus armeniaca OX=36596 GN... [more]
I3SHR81.6e-4978.95Photosystem II 10 kDa polypeptide, chloroplastic OS=Lotus japonicus OX=34305 PE=... [more]
M5WVP23.6e-4979.26Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus persica OX=3760 GN=PR... [more]
A0A5E4G3Z33.6e-4979.26Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus dulcis OX=3755 GN=ALM... [more]
A0A1U7Z3M37.9e-4980.30Photosystem II 10 kDa polypeptide, chloroplastic OS=Nelumbo nucifera OX=4432 GN=... [more]
Match NameE-valueIdentityDescription
AT1G79040.11.2e-4672.26photosystem II subunit R [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006814Photosystem II PsbRPFAMPF04725PsbRcoord: 36..133
e-value: 3.6E-49
score: 165.1
IPR006814Photosystem II PsbRPANTHERPTHR34369PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTICcoord: 1..134
NoneNo IPR availablePANTHERPTHR34369:SF2PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTICcoord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0016780.1Sed0016780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010270 photosystem II oxygen evolving complex assembly
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
cellular_component GO:0042651 thylakoid membrane
molecular_function GO:0003729 mRNA binding