Sed0016780 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTATTTTCTCCTTGTTCCAGTCCTCTTATTAAAATGGAATACACAAATCTAGAAAATAAAAACATAGACTATGAAAAGAAAATGAATTAATTAAGTAAGAAGCAAAGGATGAAAAGTGGGAAGAAATCAAAATGAGAAGAGCAATCTTGAATGGAAGGCTAAAAATGGAGGGAAAAGAATTACCTCAACAAATGGAAAAGGATGATATCCAGATTTCCAACCACTCAACTTCTGGACTACGTGCTCTCCTAATTACCAATCACTCCCATTCCCTACCTTAACCTCTCTCGGTAATTACATCGAACACTTCGCGTGCACACCATTTCCAAATCGCAATCGCAATCGCCAATGGCTTCTTCTCTCAGCCTCAAATCCTCCGATTTTGCCATCGCTGCTCGCGGCCGGGTTCTCCCGTCGATCGCCAGGACTAACTCCTCGATCAAAGTAGTCGCCAGCGGCGGCAAGAAAATCAAAACCGATACACCCTACGGTACCCTTCCTCTCTATTCATCATATACTGAATTCGGTTCAGATTTGAGAATTTGTGGCGGTTATTTATTGAAATTTTGGCCGATTATGGGGGATTTATTGCAGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGACGGTAAGAGATTAAGTTTCCGATTCGCTGTTGTGTTCAAATTCTGATCATTATTTGCTTCTTTGACTTTCTCATCTTTCCCGCCATAATTAATTTTTTAAATCACGGGTTTTCAGTTACTTTCCAGTTATATTCCTAAATTAATTAAACATTTTTATCCTTTTTTGTATTAATAGTTTTTTAGTTAGATAATGAAATGTTGCCTTAACTAATTTTTTTATTTTAATTTCTAATATATCAATGAAATGATGATTTTTTTTTTTTTTTTGAAAAGTGATGAAATGATGATTTTAAGAGTGTGAAGTAGTAATTTTTTGTATACTAGTATATAATGATGCTGATGTCCTCTTTGACATTTTATGTCCATTTTTTTAGTTTTTTTTTATGGCGAAGGCTAAAATTTACATTTACAGATTTACTCCTTGTAATTCATGAATTAAAATAGTATTTTTAACTATAATTTTTCATAAATTTTAGAATATATTCTTGGCATTTCTCGTAGTAATTTTTTATTTGATAGTTTGTATTAAAATTATAAAATGCAATAAATATTCTATTTAAAAATTCATGAAGGAAGTTGAACAAACTCAAAAAATAAATAGATTAAAATAGTATTCCAAAATAAAGAGACTAAAATAGTATTTTAATTTTTTTTCAATAAAAACAATAGTTTAAATCTAAGCTATGTGCATAAATTCTTTAATTTAATTATTGGTGAACTCAAAAAAATATATTTTAATCGTTATTTAATTTATATTTTAACATGACATAATGTTGTACTCACTTGAATGAAAATTGCAACACTTTTAAAATTTAACGTTAAAATTACATCACTCATCAAAATTTGAAGTGAGATTTTTAAAGCATGCAGATGAAATTGACACAACTTCAAGTTTAAATAAAAAATATTATTTTCACTAATTTTTTAACAAAAAATAAAATTATTTTCTGTCTCACTCTCTTTTTCTTTTCTTTTTTTTTTAAATATATATACATATACACACGAATATGTTTCTTTTTTAGTACTTATATATATATATATATATATATATATATATATATATATATATATATCAACTATTGCTGGACTCACACACACAAAAAAAAAACTTTTAATTGCATTCTCTACTAAAATAATTTAAGTATAGGCTAGGAAATTTTTATACTATGAAAGTATTATTCATTGAGAATGATTCGAAAAGTCTCAATTGTAACTATAGGATTATTATTATTATTATTATTATTTATTATTATTATTTATTATTATTATTTTTTAATTTAGGGCAAGGGAGTATACCAATATGTGGACAAATACGGTGCCAATGTTGATGGATACAGGTACAATACCTTTTACCTTTTTCTTCATTTGACAAGCATTTTTATGCACTATAAAAAAAATAGTATTAAATTATAAATTCGGTCTTTTTATTTTGAAAAATGTAAAATTTAATTTAAATATATATAATATTTGAAGTTAGGATATAATTTTCATAATTTGATCAAACTTAAGAAAACAATTTATATTATTAATAATCGTAAACAAAACAAGAAGCTATAGTTGCTTAACTATGTGTAAATGATGTAGTCTTTTATATTCTTATTGAAAATGTAGGTTAAATAGTTAGATTGAATAAAATTAAGTTCCAATTTTCAATTTTGAATTACTAATTTTCTAATTTTTAATTTTATCTAATCATTTACTTCTTCTTTTTTAATCATTTACTTAAGTCCTTGTAAATAATTAATTATCCTAAATTTAATTTTTCTGCAATTATGAATGTGATAAACTCAAATACAACTTTTAAAACTATATAAACTAAAATTCATCTTGGAGTGATCTAGGTCAAGGTTTCGAATAATTGAGAGGGGTTGAATTTTCTTGAAATGATCAAATTTATAATTTCAACATAAAAATCTTAGAATTGCTTACTGGTATTAGAGTTTTGATGTGTATAATTTGGAATGAAAATATCAGATTATATATTTGTTATCTTGTGTGCTCTAGTTTTAAAAGCTTAAATTTAATTTTTGGGCTTTTCTTGCTTTTCTTTTTTACTTAATGATTATTTGTATTTTACAGTCCTATCTACAACACTGATGAATGGTCTGCTACTGGTGATGTATATGCTGGGGGTAAGAAATTGTAACCAATACTTTCTTACCATTTCAATTTCTACATGTTTGGTCAATGAGGAAAAAAAGAACAATATTGAAGCTTTTTCTTCTTTCTTTCTTTATTTAATTGTTTAATTATTGATAGACCATTTCAAATAGGTTATTAGCAATAAAGAATTGTTTAGGTTATGCTATATCCATTTTCGCTAAATATAAAAATATGAAATTTTAAAGTTAGAGAATTTTCAGATTTACCTTTTTTACTTTTTTTTTTTCTTTTCAATTTTGTGATTGGATTACTATAAATTGAAATCGTCACAGTTTTCCACTAAAAAAACAATTTTTTTTTTAATATTCACCCAACAATTCTAAACTTTTAACATTAAATTCTAAACACTAAATCTTGAATTCTAAACCCTCAACTTTAAATCATAAACATTAAATCTTAATAGAAAAGATATTTTCATAACATCTTACTTTAACATTTAAGATAAAAAATATATAATATTTAATATTTAATACTTAAGTGAAAATAAAATCTTATTTTTATTTATATACATTTTTGGAAATGACATTTTAAAAATATGGAATGTGTATTTTAGTATACTCATAGATAAAAGCCAAATTTGTAAAAATATGACATGTATTTTTTTTCACAATTTTGAATATTGAATTGCAGGTACAACGGGGCTGGCTATTTGGGCCGTGACTCTATTTGGGCTTCTTGCTGGAGGGGCCCTTCTTGTCTACAACACAAGTGCTCTGGCCCAGTGATCTCATACACAGCCCATTATCCATTCCTTGCCTATATATATACTATGAGCCCCTTTGTAATCTTTCATATTTAAAACCTAAACTCATTTGAATACACTCATTATGTTCTGACAAAA GCTATTTTCTCCTTGTTCCAGTCCTCTTATTAAAATGGAATACACAAATCTAGAAAATAAAAACATAGACTATGAAAAGAAAATGAATTAATTAAGTAAGAAGCAAAGGATGAAAAGTGGGAAGAAATCAAAATGAGAAGAGCAATCTTGAATGGAAGGCTAAAAATGGAGGGAAAAGAATTACCTCAACAAATGGAAAAGGATGATATCCAGATTTCCAACCACTCAACTTCTGGACTACGTGCTCTCCTAATTACCAATCACTCCCATTCCCTACCTTAACCTCTCTCGGTAATTACATCGAACACTTCGCGTGCACACCATTTCCAAATCGCAATCGCAATCGCCAATGGCTTCTTCTCTCAGCCTCAAATCCTCCGATTTTGCCATCGCTGCTCGCGGCCGGGTTCTCCCGTCGATCGCCAGGACTAACTCCTCGATCAAAGTAGTCGCCAGCGGCGGCAAGAAAATCAAAACCGATACACCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGACGGGCAAGGGAGTATACCAATATGTGGACAAATACGGTGCCAATGTTGATGGATACAGTCCTATCTACAACACTGATGAATGGTCTGCTACTGGTGATGTATATGCTGGGGGTACAACGGGGCTGGCTATTTGGGCCGTGACTCTATTTGGGCTTCTTGCTGGAGGGGCCCTTCTTGTCTACAACACAAGTGCTCTGGCCCAGTGATCTCATACACAGCCCATTATCCATTCCTTGCCTATATATATACTATGAGCCCCTTTGTAATCTTTCATATTTAAAACCTAAACTCATTTGAATACACTCATTATGTTCTGACAAAA ATGGCTTCTTCTCTCAGCCTCAAATCCTCCGATTTTGCCATCGCTGCTCGCGGCCGGGTTCTCCCGTCGATCGCCAGGACTAACTCCTCGATCAAAGTAGTCGCCAGCGGCGGCAAGAAAATCAAAACCGATACACCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGACGGGCAAGGGAGTATACCAATATGTGGACAAATACGGTGCCAATGTTGATGGATACAGTCCTATCTACAACACTGATGAATGGTCTGCTACTGGTGATGTATATGCTGGGGGTACAACGGGGCTGGCTATTTGGGCCGTGACTCTATTTGGGCTTCTTGCTGGAGGGGCCCTTCTTGTCTACAACACAAGTGCTCTGGCCCAGTGA MASSLSLKSSDFAIAARGRVLPSIARTNSSIKVVASGGKKIKTDTPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSATGDVYAGGTTGLAIWAVTLFGLLAGGALLVYNTSALAQ Homology
BLAST of Sed0016780 vs. NCBI nr
Match: XP_038899014.1 (photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 217.6 bits (553), Expect = 6.4e-53 Identity = 116/139 (83.45%), Postives = 121/139 (87.05%), Query Frame = 0
BLAST of Sed0016780 vs. NCBI nr
Match: CAB4277098.1 (unnamed protein product [Prunus armeniaca]) HSP 1 Score: 206.1 bits (523), Expect = 1.9e-49 Identity = 108/135 (80.00%), Postives = 119/135 (88.15%), Query Frame = 0
BLAST of Sed0016780 vs. NCBI nr
Match: AFK39810.1 (unknown [Lotus japonicus] >AFK44073.1 unknown [Lotus japonicus]) HSP 1 Score: 205.3 bits (521), Expect = 3.3e-49 Identity = 105/133 (78.95%), Postives = 119/133 (89.47%), Query Frame = 0
BLAST of Sed0016780 vs. NCBI nr
Match: VVA34501.1 (PREDICTED: photosystem II [Prunus dulcis]) HSP 1 Score: 204.1 bits (518), Expect = 7.3e-49 Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0
BLAST of Sed0016780 vs. NCBI nr
Match: XP_007212214.1 (photosystem II 10 kDa polypeptide, chloroplastic [Prunus persica] >XP_034212001.1 photosystem II 10 kDa polypeptide, chloroplastic [Prunus dulcis] >ONI12091.1 hypothetical protein PRUPE_4G143700 [Prunus persica]) HSP 1 Score: 204.1 bits (518), Expect = 7.3e-49 Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0
BLAST of Sed0016780 vs. ExPASy Swiss-Prot
Match: P06183 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN=PSBR PE=2 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 3.4e-49 Identity = 103/132 (78.03%), Postives = 112/132 (84.85%), Query Frame = 0
BLAST of Sed0016780 vs. ExPASy Swiss-Prot
Match: Q40163 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBR PE=2 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 1.0e-48 Identity = 102/132 (77.27%), Postives = 111/132 (84.09%), Query Frame = 0
BLAST of Sed0016780 vs. ExPASy Swiss-Prot
Match: P10690 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBR PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 3.8e-48 Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 0
BLAST of Sed0016780 vs. ExPASy Swiss-Prot
Match: Q40519 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBR PE=2 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 2.7e-46 Identity = 100/138 (72.46%), Postives = 118/138 (85.51%), Query Frame = 0
BLAST of Sed0016780 vs. ExPASy Swiss-Prot
Match: P27202 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBR PE=1 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 1.8e-45 Identity = 99/137 (72.26%), Postives = 112/137 (81.75%), Query Frame = 0
BLAST of Sed0016780 vs. ExPASy TrEMBL
Match: A0A6J5USX5 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS26567 PE=3 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 9.4e-50 Identity = 108/135 (80.00%), Postives = 119/135 (88.15%), Query Frame = 0
BLAST of Sed0016780 vs. ExPASy TrEMBL
Match: I3SHR8 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 1.6e-49 Identity = 105/133 (78.95%), Postives = 119/133 (89.47%), Query Frame = 0
BLAST of Sed0016780 vs. ExPASy TrEMBL
Match: M5WVP2 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus persica OX=3760 GN=PRUPE_4G143700 PE=3 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 3.6e-49 Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0
BLAST of Sed0016780 vs. ExPASy TrEMBL
Match: A0A5E4G3Z3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Prunus dulcis OX=3755 GN=ALMOND_2B031350 PE=3 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 3.6e-49 Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0
BLAST of Sed0016780 vs. ExPASy TrEMBL
Match: A0A1U7Z3M3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104588920 PE=3 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 7.9e-49 Identity = 106/132 (80.30%), Postives = 114/132 (86.36%), Query Frame = 0
BLAST of Sed0016780 vs. TAIR 10
Match: AT1G79040.1 (photosystem II subunit R ) HSP 1 Score: 183.3 bits (464), Expect = 1.2e-46 Identity = 99/137 (72.26%), Postives = 112/137 (81.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|