Sed0016773 (gene) Chayote v1

Overview


Name	Sed0016773
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat-containing protein
Location	LG07: 8159653 .. 8160774 (+)
RNA-Seq Expression	Sed0016773
Synteny	Sed0016773

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCCTACTGATGCCAATTGCGAGCCATTGACCGTGGTATTCAAATTCATGACCTTTTACTCACATTTTTTTTACGGAGAAATGTGGGCGTTTCTTCCAAACTTCTTCGTCTCTTTGCATCTTTTGGGTACATGGAGAATGCGCACCAAGTGTTCGATGAAATGGGTCAACGAAATCTCTTTGCATTTACCTGGAATTCTCTTATTTCTGGTAGTGGTGAACTTGGTCTTTTTGAAGCTCTTCTTTGGAATGGAAGATGAAGGTGTTGAATCTGACCATTTCACTTTTTCTCATGAGCTCAAGGCCTGTTGTGGCATTGGGTCGGTTCGAATCAGGGAGGCGGTGCACCGGGATAGATGTGTTTGTCTTCAATGCTCTAGTTGATATATATTCCAAATGTGGCAACATTGTGAGGGCTAAGAAAGTGTTGGATCAGACTGTTTGTAAGGATAGATAGTTTCATGAAACTAATGCTCACTGGCTACATTGCCACGGGCTACTCTTGGGGGTATTGGACATCTTTGATAAAATGATTCGAGAAGCGTACGGGCTGGATTCAGTTGCTCTGTCCACCATTCTTTCTGAAGTTTTGTTTATGAGATTCAAGTTACATATTGATGGATGGGTGATTCGACACGGAGTTGAATGGAATTTGTCCATTGTTAACTCTTCGATTGTCCTGTATGGCAACTGTGGTAAGATCGACAGAGCGAAATTCGATATAGTCTCATGGAACTCCATAATCTCTGCCCATTTCAATACCTTAAAACCTTTGACATATTTTGAAGAAATGGAAAGCTTTGGTGTTTTGGTAGACAGTGTAACAACACCTGTGTCATTATTGTCAACTTTTTCCCTTCTGGGCTTGGTGAAGGAAGGGGAAAAGTTATGTCTCCTGATGGGAATTGTGGAATAAAACCAATCATAGAACTTTATGCTTGTATGGTGAATCTTTATGGGAGGGCAGAGCAGCGTAACAGGACGAATGGAGATCGAGCCTGGTCCGATCGTATGGAGGGTGCTGTTGTGTGCGTGCTTTCTCCATGGTAATGTACGTGTCGCCGAGATCGCTACTGAAAAACCTTTTGTATGGCAATGCCGGGAGATTGGAAGATGA

mRNA sequence

ATGGCGTCCCTACTGATAAATGTGGGCGTTTCTTCCAAACTTCTTCGTCTCTTTGCATCTTTTGGGTACATGGAGAATGCGCACCAAGTGTTCGATGAAATGGGTCAACGAAATCTCTTTGCATTTACCTGGAATTCTCTTATTTCTGGTAGTGGTGAACTTGATGAAGGTGTTGAATCTGACCATTTCACTTTTTCTCATGAGCTCAAGGCCTGTTGTGATGTGTTTGTCTTCAATGCTCTAGTTGATATATATTCCAAATGTGGCAACATTGTGAGGGCTAAGAAATTTCATGAAACTAATGCTCACTGGCTACATTGCCACGGGCTACTCTTGGGGGTATTGGACATCTTTGATAAAATGATTCGAGAAGCGTACGGGCTGGATTCAGTTGCTCTGTCCACCATTCTTTCTGAAGTTTTGTTTATGAGATTCAAGTTACATATTGATGGATGGGTGATTCGACACGGAGTTGAATGGAATTTGTCCATTGTTAACTCTTCGATTGTCCTGTATGGCAACTGTGGTAAGATCGACAGAGCGAAATTCGATATAGTCTCATGGAACTCCATAATCTCTGCCCATTTCAATACCTTAAAACCTTTGACATATTTTGAAGAAATGGAAAGCTTTGGTGTTTTGGTAGACAGTGTAACAACACCTGTGTCATTATTGTCAACTTTTTCCCTTCTGGGCTTGGTGAAGGAAGGGGAAAAGTTATGTCTCCTGATGGGAATTAGCAGCGTAACAGGACGAATGGAGATCGAGCCTGGTCCGATCGTATGGAGGGTGCTGTTGTGTGCGTGCTTTCTCCATGGTAATGTACGTGTCGCCGAGATCGCTACTGAAAAACCTTTTGTATGGCAATGCCGGGAGATTGGAAGATGA

Coding sequence (CDS)

ATGGCGTCCCTACTGATAAATGTGGGCGTTTCTTCCAAACTTCTTCGTCTCTTTGCATCTTTTGGGTACATGGAGAATGCGCACCAAGTGTTCGATGAAATGGGTCAACGAAATCTCTTTGCATTTACCTGGAATTCTCTTATTTCTGGTAGTGGTGAACTTGATGAAGGTGTTGAATCTGACCATTTCACTTTTTCTCATGAGCTCAAGGCCTGTTGTGATGTGTTTGTCTTCAATGCTCTAGTTGATATATATTCCAAATGTGGCAACATTGTGAGGGCTAAGAAATTTCATGAAACTAATGCTCACTGGCTACATTGCCACGGGCTACTCTTGGGGGTATTGGACATCTTTGATAAAATGATTCGAGAAGCGTACGGGCTGGATTCAGTTGCTCTGTCCACCATTCTTTCTGAAGTTTTGTTTATGAGATTCAAGTTACATATTGATGGATGGGTGATTCGACACGGAGTTGAATGGAATTTGTCCATTGTTAACTCTTCGATTGTCCTGTATGGCAACTGTGGTAAGATCGACAGAGCGAAATTCGATATAGTCTCATGGAACTCCATAATCTCTGCCCATTTCAATACCTTAAAACCTTTGACATATTTTGAAGAAATGGAAAGCTTTGGTGTTTTGGTAGACAGTGTAACAACACCTGTGTCATTATTGTCAACTTTTTCCCTTCTGGGCTTGGTGAAGGAAGGGGAAAAGTTATGTCTCCTGATGGGAATTAGCAGCGTAACAGGACGAATGGAGATCGAGCCTGGTCCGATCGTATGGAGGGTGCTGTTGTGTGCGTGCTTTCTCCATGGTAATGTACGTGTCGCCGAGATCGCTACTGAAAAACCTTTTGTATGGCAATGCCGGGAGATTGGAAGATGA

Protein sequence

MASLLINVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGELDEGVESDHFTFSHELKACCDVFVFNALVDIYSKCGNIVRAKKFHETNAHWLHCHGLLLGVLDIFDKMIREAYGLDSVALSTILSEVLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKFDIVSWNSIISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLMGISSVTGRMEIEPGPIVWRVLLCACFLHGNVRVAEIATEKPFVWQCREIGR

Homology

[Close]

BLAST of Sed0016773 vs. NCBI nr
Match: XP_038901542.1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Benincasa hispida])

HSP 1 Score: 323.6 bits (828), Expect = 1.8e-84
Identity = 194/363 (53.44%), Postives = 218/363 (60.06%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           NVGVSSKLLRL+ASFGYME AHQVFDEM +RN+ AF WNSLISG  EL            
Sbjct: 128 NVGVSSKLLRLYASFGYMEIAHQVFDEMTKRNVSAFAWNSLISGYAELGLYEDALALYFQ 187

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             +EGVE DHFTF   LKAC                       DVFV NALVD+YSKCG+
Sbjct: 188 MEEEGVEPDHFTFPRVLKACGGIASLQIGEAVHRHVIRSGFAGDVFVLNALVDMYSKCGS 247

Query: 127 IVRAKKFHE-----TNAHWLHC------HGLLLGVLDIFDKMIREAYGLDSVALSTILSE 186
           IVRA+K  +         W         HGLL   LDIFD+MI+E Y  DSVALSTILS 
Sbjct: 248 IVRARKVFDQIVCKDTVSWNSMLTGYTRHGLLCEALDIFDQMIQEGYEPDSVALSTILSN 307

Query: 187 VLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNSI 246
           +  ++F+LHI GWVIRHGVEWNLSI NS IV+Y NCGKI+RAK+        D VSWNSI
Sbjct: 308 ISSLKFRLHIHGWVIRHGVEWNLSIANSLIVMYANCGKINRAKWLFQQMPQKDSVSWNSI 367

Query: 247 ISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM------- 287
           ISAHFN+ + LTYFE MES GVL DSVT  VSLLST + LGLVKEG KL  LM       
Sbjct: 368 ISAHFNSPEALTYFEVMESLGVLPDSVTF-VSLLSTCAYLGLVKEGGKLYSLMKGKYRIR 427

[Close]

BLAST of Sed0016773 vs. NCBI nr
Match: KAA0067680.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK23684.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.5 bits (815), Expect = 5.9e-83
Identity = 189/363 (52.07%), Postives = 217/363 (59.78%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           NVG+SSKLLRL+AS GYME+AHQVFDEMG+RN  AF WNSLISG  EL            
Sbjct: 128 NVGISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYEDALALYFQ 187

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             +EGVE DHFTF   LKAC                       DVFV NALVD+YSKCG 
Sbjct: 188 MEEEGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGC 247

Query: 127 IVRAKKFHETNAH-----WLHC------HGLLLGVLDIFDKMIREAYGLDSVALSTILSE 186
           IVRA+K  +   +     W         HGL    LDIFD+MI+E Y  DSVALST+LS 
Sbjct: 248 IVRARKVFDQIVYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYKPDSVALSTLLSN 307

Query: 187 VLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNSI 246
           +L ++FKLHI GWVIRHGVEWNLSI NS IV+Y  CGK++RAK+        D+VSWNSI
Sbjct: 308 ILSLKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSI 367

Query: 247 ISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM------- 287
           ISAHFNT + LTYFE MES GVL D VT  VSLLST + LGLVKEG +L  LM       
Sbjct: 368 ISAHFNTTEALTYFEVMESLGVLPDRVTF-VSLLSTCAHLGLVKEGGRLYSLMKGKYRIR 427

[Close]

BLAST of Sed0016773 vs. NCBI nr
Match: XP_016898932.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucumis melo])

HSP 1 Score: 318.5 bits (815), Expect = 5.9e-83
Identity = 189/363 (52.07%), Postives = 217/363 (59.78%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           NVG+SSKLLRL+AS GYME+AHQVFDEMG+RN  AF WNSLISG  EL            
Sbjct: 128 NVGISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYEDALALYFQ 187

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             +EGVE DHFTF   LKAC                       DVFV NALVD+YSKCG 
Sbjct: 188 MEEEGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGC 247

Query: 127 IVRAKKFHETNAH-----WLHC------HGLLLGVLDIFDKMIREAYGLDSVALSTILSE 186
           IVRA+K  +   +     W         HGL    LDIFD+MI+E Y  DSVALST+LS 
Sbjct: 248 IVRARKVFDQIVYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYKPDSVALSTLLSN 307

Query: 187 VLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNSI 246
           +L ++FKLHI GWVIRHGVEWNLSI NS IV+Y  CGK++RAK+        D+VSWNSI
Sbjct: 308 ILSLKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSI 367

Query: 247 ISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM------- 287
           ISAHFNT + LTYFE MES GVL D VT  VSLLST + LGLVKEG +L  LM       
Sbjct: 368 ISAHFNTTEALTYFEVMESLGVLPDRVTF-VSLLSTCAHLGLVKEGGRLYSLMKGKYRIR 427

[Close]

BLAST of Sed0016773 vs. NCBI nr
Match: XP_023549868.1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.2 bits (809), Expect = 2.9e-82
Identity = 188/363 (51.79%), Postives = 219/363 (60.33%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           NVGVSSKLLRL+ASFGYME+AHQVFDEM QRNL AF+WNSLISG  EL            
Sbjct: 128 NVGVSSKLLRLYASFGYMEDAHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQ 187

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             +EGVE DHFTF   LKAC                       D+FV NALVD+Y+KCG+
Sbjct: 188 MEEEGVEPDHFTFPRVLKACGGIGSIRVGEGVHRHIVRSGFAGDIFVLNALVDMYAKCGD 247

Query: 127 IVRAKK-----FHETNAHWLHC------HGLLLGVLDIFDKMIREAYGLDSVALSTILSE 186
           I+RA+K      H+    W         HGLLL  L+ FD+MI+E Y  DSVALST++S 
Sbjct: 248 IMRARKVFDQIVHKDTVSWNSMLTGYTRHGLLLEALNTFDQMIQEGYEPDSVALSTMISN 307

Query: 187 VLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNSI 246
           +   +FKLHI GW IRHG+EWNLSIVNS I +Y N GKI+RA++        DIVSWN+I
Sbjct: 308 ISSSKFKLHIHGWAIRHGIEWNLSIVNSLIAMYANSGKINRARWLFEQMPERDIVSWNTI 367

Query: 247 ISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM----GIS 287
           ISAH NT K LTYFE MES G L DSVT  VSLLST + L LVKEG KL  +M    GI 
Sbjct: 368 ISAHSNTSKALTYFEVMESLGFLPDSVTF-VSLLSTCAHLSLVKEGGKLYSVMKGKYGIR 427

[Close]

BLAST of Sed0016773 vs. NCBI nr
Match: XP_022993795.1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita maxima])

HSP 1 Score: 315.5 bits (807), Expect = 5.0e-82
Identity = 189/363 (52.07%), Postives = 221/363 (60.88%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           NVGVSSKLLRL+ASFGYME+AHQVFDEM QRNL AF+WNSLISG  EL            
Sbjct: 128 NVGVSSKLLRLYASFGYMEDAHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQ 187

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             +EGVE DHFTF   LKAC                       D+FV NALVD+Y+KCG+
Sbjct: 188 MEEEGVEPDHFTFPRVLKACGGIGSIRVGEAVHRHIVRSGFAGDIFVLNALVDMYAKCGD 247

Query: 127 IVRAKK-----FHETNAHWLHC------HGLLLGVLDIFDKMIREAYGLDSVALSTILSE 186
           I+RA+K      H+    W         HGLLL  L+ FD+MI+E Y  DSVALST++S 
Sbjct: 248 IMRARKVFDQIIHKDTVSWNSMLTGYTRHGLLLEALNTFDQMIQEGYEPDSVALSTMISN 307

Query: 187 VLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNSI 246
           +   +FKLHI GW IRHG+EWNLSI NS I +Y N GKI+RA++        DIVSWN+I
Sbjct: 308 ITSSKFKLHIHGWAIRHGIEWNLSIANSLIAMYANSGKINRARWLFEQMPQRDIVSWNTI 367

Query: 247 ISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM----GIS 287
           ISAH NT K LTYFE MES GVL DSVT  VSLLST + L LVKEG KL  +M    GI 
Sbjct: 368 ISAHSNTSKALTYFEVMESLGVLPDSVTF-VSLLSTCAHLSLVKEGGKLYSVMKGKYGIR 427

[Close]

BLAST of Sed0016773 vs. ExPASy Swiss-Prot
Match: Q9SB36 (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E53 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.9e-56
Identity = 137/364 (37.64%), Postives = 185/364 (50.82%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           N+G+SSKL+RL+AS GY E AH+VFD M +R+   F WNSLISG  EL            
Sbjct: 126 NLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQ 185

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             ++GV+ D FTF   LKAC                       DV+V NALV +Y+KCG+
Sbjct: 186 MAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGD 245

Query: 127 IVRAKKFHETNAH------------WLHCHGLLLGVLDIFDKMIREAYGLDSVALSTILS 186
           IV+A+   +   H            +LH HGLL   LDIF  M++     D VA+S++L+
Sbjct: 246 IVKARNVFDMIPHKDYVSWNSMLTGYLH-HGLLHEALDIFRLMVQNGIEPDKVAISSVLA 305

Query: 187 EVLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNS 246
            VL  +    + GWVIR G+EW LS+ N+ IVLY   G++ +A F        D VSWN+
Sbjct: 306 RVLSFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNA 365

Query: 247 IISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM------ 287
           IISAH      L YFE+M       D +T  VS+LS  +  G+V++GE+L  LM      
Sbjct: 366 IISAHSKNSNGLKYFEQMHRANAKPDGITF-VSVLSLCANTGMVEDGERLFSLMSKEYGI 425

[Close]

BLAST of Sed0016773 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.8e-19
Identity = 85/326 (26.07%), Postives = 139/326 (42.64%), Query Frame = 0


Query: 24  MENAHQVFDEMGQRNLFAFTWNSLISGSGELDEGVESDHFTFSHEL---KACCDVFVFNA 83
           +E A ++FD+M +RN    +WN++++G       V+ +    + EL     C +V  +N 
Sbjct: 297 VEEARELFDKMPERN--EVSWNAMLAGY------VQGERMEMAKELFDVMPCRNVSTWNT 356

Query: 84  LVDIYSKCGNIVRAKKFHE-----TNAHWLHC------HGLLLGVLDIFDKMIREAYGLD 143
           ++  Y++CG I  AK   +         W          G     L +F +M RE   L+
Sbjct: 357 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 416

Query: 144 SVALSTILS---EVLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAK---- 203
             + S+ LS   +V+ +     + G +++ G E    + N+ +++Y  CG I+ A     
Sbjct: 417 RSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK 476

Query: 204 ----FDIVSWNSII---SAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVK 263
                DIVSWN++I   S H      L +FE M+  G+  D  T  V++LS  S  GLV 
Sbjct: 477 EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM-VAVLSACSHTGLVD 536

Query: 264 EGE---------------------------KLCLLMGISSVTGRMEIEPGPIVWRVLLCA 295
           +G                            +  LL    ++   M  EP   +W  LL A
Sbjct: 537 KGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGA 596

[Close]

BLAST of Sed0016773 vs. ExPASy Swiss-Prot
Match: Q9SN39 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-18
Identity = 90/362 (24.86%), Postives = 154/362 (42.54%), Query Frame = 0


Query: 14  LLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISG------SGEL--------DEGVE 73
           LL +++  G +++A  VF EM  R++ ++T  S+I+G      +GE         +EG+ 
Sbjct: 337 LLDMYSKCGDLDSAKAVFREMSDRSVVSYT--SMIAGYAREGLAGEAVKLFEEMEEEGIS 396

Query: 74  SDHFTFSHELKACC----------------------DVFVFNALVDIYSKCGNIVRAK-K 133
            D +T +  L  C                       D+FV NAL+D+Y+KCG++  A+  
Sbjct: 397 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 456

Query: 134 FHETNAHWLHCHGLLLG----------VLDIFDKMIRE-AYGLDSVALSTIL---SEVLF 193
           F E     +     ++G           L +F+ ++ E  +  D   ++ +L   + +  
Sbjct: 457 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 516

Query: 194 MRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKI--------DRAKFDIVSWNSIISA 253
                 I G+++R+G   +  + NS + +Y  CG +        D A  D+VSW  +I+ 
Sbjct: 517 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAG 576

Query: 254 ---HFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEG-------------- 287
              H    + +  F +M   G+  D ++  VSLL   S  GLV EG              
Sbjct: 577 YGMHGFGKEAIALFNQMRQAGIEADEISF-VSLLYACSHSGLVDEGWRFFNIMRHECKIE 636

[Close]

BLAST of Sed0016773 vs. ExPASy Swiss-Prot
Match: Q9CA54 (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.4e-17
Identity = 91/336 (27.08%), Postives = 146/336 (43.45%), Query Frame = 0


Query: 10  VSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLI---------SGSGEL-DEGVE 69
           V + L+ ++   G +E A +VFDEM Q NL A  WN++I         +G+ E+ D+ + 
Sbjct: 143 VGTTLIGMYGGCGCVEFARKVFDEMHQPNLVA--WNAVITACFRGNDVAGAREIFDKMLV 202

Query: 70  SDHFTFSHELKACCDVFVFNALVDIYSKCGNIVRAKKF-----HETNAHWLHCHGLLLGV 129
            +H +             +N ++  Y K G +  AK+      H  +  W     +++G+
Sbjct: 203 RNHTS-------------WNVMLAGYIKAGELESAKRIFSEMPHRDDVSW---STMIVGI 262

Query: 130 LD---------IFDKMIREAYGLDSVALSTIL---SEVLFMRFKLHIDGWVIRHGVEWNL 189
                       F ++ R     + V+L+ +L   S+     F   + G+V + G  W +
Sbjct: 263 AHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIV 322

Query: 190 SIVNSSIVLYGNCGKIDRA---------KFDIVSWNSIISA---HFNTLKPLTYFEEMES 249
           S+ N+ I +Y  CG +  A         K  IVSW S+I+    H    + +  F EM +
Sbjct: 323 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 382

Query: 250 FGVLVDSVTTPVSLLSTFSLLGLVKEGEKL------------------CL--LMGISSVT 280
           +GV  D ++  +SLL   S  GL++EGE                    C+  L G S   
Sbjct: 383 YGVTPDGISF-ISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKL 442

[Close]

BLAST of Sed0016773 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.6e-17
Identity = 80/275 (29.09%), Postives = 129/275 (46.91%), Query Frame = 0


Query: 75  VFVFNALVDIYSKCGNIVRAKKFH-----ETNAHW---LHCH---GLLLGVLDIFDKMIR 134
           V++   LVD+Y++ G +  A              W   + C+   G     L  F +M+R
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276

Query: 135 EA--YGLDSVALSTIL----SEVLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGK 194
           E      +SV + ++L    S     + KL I G+++R G++  L ++++ + +YG CGK
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKL-IHGYILRRGLDSILPVISALVTMYGRCGK 336

Query: 195 IDRAK--------FDIVSWNSIISA---HFNTLKPLTYFEEMESFGVLVDSVTTPVSLLS 254
           ++  +         D+VSWNS+IS+   H    K +  FEEM + G     VT  VS+L 
Sbjct: 337 LEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTF-VSVLG 396

Query: 255 TFSLLGLVKEGEKL------------------CL--LMG-------ISSVTGRMEIEPGP 295
             S  GLV+EG++L                  C+  L+G        + +   M  EPGP
Sbjct: 397 ACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 456

[Close]

BLAST of Sed0016773 vs. ExPASy TrEMBL
Match: A0A5D3DJ70 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00500 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.8e-83
Identity = 189/363 (52.07%), Postives = 217/363 (59.78%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           NVG+SSKLLRL+AS GYME+AHQVFDEMG+RN  AF WNSLISG  EL            
Sbjct: 128 NVGISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYEDALALYFQ 187

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             +EGVE DHFTF   LKAC                       DVFV NALVD+YSKCG 
Sbjct: 188 MEEEGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGC 247

Query: 127 IVRAKKFHETNAH-----WLHC------HGLLLGVLDIFDKMIREAYGLDSVALSTILSE 186
           IVRA+K  +   +     W         HGL    LDIFD+MI+E Y  DSVALST+LS 
Sbjct: 248 IVRARKVFDQIVYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYKPDSVALSTLLSN 307

Query: 187 VLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNSI 246
           +L ++FKLHI GWVIRHGVEWNLSI NS IV+Y  CGK++RAK+        D+VSWNSI
Sbjct: 308 ILSLKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSI 367

Query: 247 ISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM------- 287
           ISAHFNT + LTYFE MES GVL D VT  VSLLST + LGLVKEG +L  LM       
Sbjct: 368 ISAHFNTTEALTYFEVMESLGVLPDRVTF-VSLLSTCAHLGLVKEGGRLYSLMKGKYRIR 427

[Close]

BLAST of Sed0016773 vs. ExPASy TrEMBL
Match: A0A1S4DSF7 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107990382 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.8e-83
Identity = 189/363 (52.07%), Postives = 217/363 (59.78%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           NVG+SSKLLRL+AS GYME+AHQVFDEMG+RN  AF WNSLISG  EL            
Sbjct: 128 NVGISSKLLRLYASSGYMEDAHQVFDEMGKRNFSAFAWNSLISGYAELGLYEDALALYFQ 187

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             +EGVE DHFTF   LKAC                       DVFV NALVD+YSKCG 
Sbjct: 188 MEEEGVEPDHFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGC 247

Query: 127 IVRAKKFHETNAH-----WLHC------HGLLLGVLDIFDKMIREAYGLDSVALSTILSE 186
           IVRA+K  +   +     W         HGL    LDIFD+MI+E Y  DSVALST+LS 
Sbjct: 248 IVRARKVFDQIVYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYKPDSVALSTLLSN 307

Query: 187 VLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNSI 246
           +L ++FKLHI GWVIRHGVEWNLSI NS IV+Y  CGK++RAK+        D+VSWNSI
Sbjct: 308 ILSLKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSI 367

Query: 247 ISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM------- 287
           ISAHFNT + LTYFE MES GVL D VT  VSLLST + LGLVKEG +L  LM       
Sbjct: 368 ISAHFNTTEALTYFEVMESLGVLPDRVTF-VSLLSTCAHLGLVKEGGRLYSLMKGKYRIR 427

[Close]

BLAST of Sed0016773 vs. ExPASy TrEMBL
Match: A0A6J1JZI1 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489696 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 2.4e-82
Identity = 189/363 (52.07%), Postives = 221/363 (60.88%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           NVGVSSKLLRL+ASFGYME+AHQVFDEM QRNL AF+WNSLISG  EL            
Sbjct: 128 NVGVSSKLLRLYASFGYMEDAHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQ 187

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             +EGVE DHFTF   LKAC                       D+FV NALVD+Y+KCG+
Sbjct: 188 MEEEGVEPDHFTFPRVLKACGGIGSIRVGEAVHRHIVRSGFAGDIFVLNALVDMYAKCGD 247

Query: 127 IVRAKK-----FHETNAHWLHC------HGLLLGVLDIFDKMIREAYGLDSVALSTILSE 186
           I+RA+K      H+    W         HGLLL  L+ FD+MI+E Y  DSVALST++S 
Sbjct: 248 IMRARKVFDQIIHKDTVSWNSMLTGYTRHGLLLEALNTFDQMIQEGYEPDSVALSTMISN 307

Query: 187 VLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNSI 246
           +   +FKLHI GW IRHG+EWNLSI NS I +Y N GKI+RA++        DIVSWN+I
Sbjct: 308 ITSSKFKLHIHGWAIRHGIEWNLSIANSLIAMYANSGKINRARWLFEQMPQRDIVSWNTI 367

Query: 247 ISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM----GIS 287
           ISAH NT K LTYFE MES GVL DSVT  VSLLST + L LVKEG KL  +M    GI 
Sbjct: 368 ISAHSNTSKALTYFEVMESLGVLPDSVTF-VSLLSTCAHLSLVKEGGKLYSVMKGKYGIR 427

[Close]

BLAST of Sed0016773 vs. ExPASy TrEMBL
Match: A0A0A0L5M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176270 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 5.4e-82
Identity = 187/363 (51.52%), Postives = 215/363 (59.23%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           NVG+SSKLLRL+ASFGYME+AHQVFDEMG RN  AF WNSLISG  EL            
Sbjct: 143 NVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQ 202

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             +EGVE D+FTF   LKAC                       DVFV NALVD+YSKCG 
Sbjct: 203 MEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGC 262

Query: 127 IVRAKKF-----HETNAHWLHC------HGLLLGVLDIFDKMIREAYGLDSVALSTILSE 186
           IVRA+K      ++    W         HGL    LDIFD+MI+E Y  DSVALST+LS 
Sbjct: 263 IVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSN 322

Query: 187 VLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNSI 246
           +  M+FKLHI GWVIRHGVEWNLSI NS IV+Y  CGK++RAK+        D+VSWNSI
Sbjct: 323 ISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSI 382

Query: 247 ISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM------- 287
           ISAHFN+ + LTYFE MES GV  D VT  VSLLST + LGLVKEG KL  LM       
Sbjct: 383 ISAHFNSAEALTYFEVMESLGVSPDGVTF-VSLLSTCAHLGLVKEGGKLYFLMKGKYGIR 442

[Close]

BLAST of Sed0016773 vs. ExPASy TrEMBL
Match: A0A6J1FPF9 (pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447624 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 2.0e-81
Identity = 187/363 (51.52%), Postives = 219/363 (60.33%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           NVGVSSKLLRL+ASFGYME+AHQVFDEM QRNL AF+WNSLISG  EL            
Sbjct: 128 NVGVSSKLLRLYASFGYMEDAHQVFDEMCQRNLSAFSWNSLISGYAELGLYEDALALYFQ 187

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             +EGVE DHFTF   LKAC                       D+FV NALVD+Y+KCG+
Sbjct: 188 MEEEGVEPDHFTFPRVLKACGGIGSIRVGEAVHRHIVRSGFAGDIFVLNALVDMYAKCGD 247

Query: 127 IVRAKKFHE-----TNAHWLHC------HGLLLGVLDIFDKMIREAYGLDSVALSTILSE 186
           I+RA+K  +         W         HGLLL  L+ FD+MI+E Y  DSVALST++S 
Sbjct: 248 IMRARKVFDQIVSKDTVSWNSMLTGYTRHGLLLEALNTFDQMIQEGYEPDSVALSTMISN 307

Query: 187 VLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNSI 246
           +   +FKLHI GW IRHG+EWNLSI NS I +Y N GKI+RA++        DIVSWN+I
Sbjct: 308 ISSSKFKLHIHGWAIRHGIEWNLSIANSLIAMYANSGKINRARWLFEQMPERDIVSWNTI 367

Query: 247 ISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKL----------- 287
           ISAH NT K LTYFE MES GVL DSVT  VSLLST + L LVKEG KL           
Sbjct: 368 ISAHSNTSKALTYFEVMESLGVLPDSVTF-VSLLSTCAHLSLVKEGGKLYTEMKGKYGIR 427

[Close]

BLAST of Sed0016773 vs. TAIR 10
Match: AT4G25270.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 220.3 bits (560), Expect = 2.0e-57
Identity = 137/364 (37.64%), Postives = 185/364 (50.82%), Query Frame = 0


Query: 7   NVGVSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISGSGEL------------ 66
           N+G+SSKL+RL+AS GY E AH+VFD M +R+   F WNSLISG  EL            
Sbjct: 126 NLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQ 185

Query: 67  --DEGVESDHFTFSHELKAC----------------------CDVFVFNALVDIYSKCGN 126
             ++GV+ D FTF   LKAC                       DV+V NALV +Y+KCG+
Sbjct: 186 MAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGD 245

Query: 127 IVRAKKFHETNAH------------WLHCHGLLLGVLDIFDKMIREAYGLDSVALSTILS 186
           IV+A+   +   H            +LH HGLL   LDIF  M++     D VA+S++L+
Sbjct: 246 IVKARNVFDMIPHKDYVSWNSMLTGYLH-HGLLHEALDIFRLMVQNGIEPDKVAISSVLA 305

Query: 187 EVLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAKF--------DIVSWNS 246
            VL  +    + GWVIR G+EW LS+ N+ IVLY   G++ +A F        D VSWN+
Sbjct: 306 RVLSFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNA 365

Query: 247 IISAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEGEKLCLLM------ 287
           IISAH      L YFE+M       D +T  VS+LS  +  G+V++GE+L  LM      
Sbjct: 366 IISAHSKNSNGLKYFEQMHRANAKPDGITF-VSVLSLCANTGMVEDGERLFSLMSKEYGI 425

[Close]

BLAST of Sed0016773 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-20
Identity = 85/326 (26.07%), Postives = 139/326 (42.64%), Query Frame = 0


Query: 24  MENAHQVFDEMGQRNLFAFTWNSLISGSGELDEGVESDHFTFSHEL---KACCDVFVFNA 83
           +E A ++FD+M +RN    +WN++++G       V+ +    + EL     C +V  +N 
Sbjct: 297 VEEARELFDKMPERN--EVSWNAMLAGY------VQGERMEMAKELFDVMPCRNVSTWNT 356

Query: 84  LVDIYSKCGNIVRAKKFHE-----TNAHWLHC------HGLLLGVLDIFDKMIREAYGLD 143
           ++  Y++CG I  AK   +         W          G     L +F +M RE   L+
Sbjct: 357 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 416

Query: 144 SVALSTILS---EVLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKIDRAK---- 203
             + S+ LS   +V+ +     + G +++ G E    + N+ +++Y  CG I+ A     
Sbjct: 417 RSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK 476

Query: 204 ----FDIVSWNSII---SAHFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVK 263
                DIVSWN++I   S H      L +FE M+  G+  D  T  V++LS  S  GLV 
Sbjct: 477 EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM-VAVLSACSHTGLVD 536

Query: 264 EGE---------------------------KLCLLMGISSVTGRMEIEPGPIVWRVLLCA 295
           +G                            +  LL    ++   M  EP   +W  LL A
Sbjct: 537 KGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGA 596

[Close]

BLAST of Sed0016773 vs. TAIR 10
Match: AT4G18750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 7.5e-20
Identity = 90/362 (24.86%), Postives = 154/362 (42.54%), Query Frame = 0


Query: 14  LLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLISG------SGEL--------DEGVE 73
           LL +++  G +++A  VF EM  R++ ++T  S+I+G      +GE         +EG+ 
Sbjct: 337 LLDMYSKCGDLDSAKAVFREMSDRSVVSYT--SMIAGYAREGLAGEAVKLFEEMEEEGIS 396

Query: 74  SDHFTFSHELKACC----------------------DVFVFNALVDIYSKCGNIVRAK-K 133
            D +T +  L  C                       D+FV NAL+D+Y+KCG++  A+  
Sbjct: 397 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 456

Query: 134 FHETNAHWLHCHGLLLG----------VLDIFDKMIRE-AYGLDSVALSTIL---SEVLF 193
           F E     +     ++G           L +F+ ++ E  +  D   ++ +L   + +  
Sbjct: 457 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 516

Query: 194 MRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGKI--------DRAKFDIVSWNSIISA 253
                 I G+++R+G   +  + NS + +Y  CG +        D A  D+VSW  +I+ 
Sbjct: 517 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAG 576

Query: 254 ---HFNTLKPLTYFEEMESFGVLVDSVTTPVSLLSTFSLLGLVKEG-------------- 287
              H    + +  F +M   G+  D ++  VSLL   S  GLV EG              
Sbjct: 577 YGMHGFGKEAIALFNQMRQAGIEADEISF-VSLLYACSHSGLVDEGWRFFNIMRHECKIE 636

[Close]

BLAST of Sed0016773 vs. TAIR 10
Match: AT1G74630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-18
Identity = 91/336 (27.08%), Postives = 146/336 (43.45%), Query Frame = 0


Query: 10  VSSKLLRLFASFGYMENAHQVFDEMGQRNLFAFTWNSLI---------SGSGEL-DEGVE 69
           V + L+ ++   G +E A +VFDEM Q NL A  WN++I         +G+ E+ D+ + 
Sbjct: 143 VGTTLIGMYGGCGCVEFARKVFDEMHQPNLVA--WNAVITACFRGNDVAGAREIFDKMLV 202

Query: 70  SDHFTFSHELKACCDVFVFNALVDIYSKCGNIVRAKKF-----HETNAHWLHCHGLLLGV 129
            +H +             +N ++  Y K G +  AK+      H  +  W     +++G+
Sbjct: 203 RNHTS-------------WNVMLAGYIKAGELESAKRIFSEMPHRDDVSW---STMIVGI 262

Query: 130 LD---------IFDKMIREAYGLDSVALSTIL---SEVLFMRFKLHIDGWVIRHGVEWNL 189
                       F ++ R     + V+L+ +L   S+     F   + G+V + G  W +
Sbjct: 263 AHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIV 322

Query: 190 SIVNSSIVLYGNCGKIDRA---------KFDIVSWNSIISA---HFNTLKPLTYFEEMES 249
           S+ N+ I +Y  CG +  A         K  IVSW S+I+    H    + +  F EM +
Sbjct: 323 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 382

Query: 250 FGVLVDSVTTPVSLLSTFSLLGLVKEGEKL------------------CL--LMGISSVT 280
           +GV  D ++  +SLL   S  GL++EGE                    C+  L G S   
Sbjct: 383 YGVTPDGISF-ISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKL 442

[Close]

BLAST of Sed0016773 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-18
Identity = 80/275 (29.09%), Postives = 129/275 (46.91%), Query Frame = 0


Query: 75  VFVFNALVDIYSKCGNIVRAKKFH-----ETNAHW---LHCH---GLLLGVLDIFDKMIR 134
           V++   LVD+Y++ G +  A              W   + C+   G     L  F +M+R
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276

Query: 135 EA--YGLDSVALSTIL----SEVLFMRFKLHIDGWVIRHGVEWNLSIVNSSIVLYGNCGK 194
           E      +SV + ++L    S     + KL I G+++R G++  L ++++ + +YG CGK
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKL-IHGYILRRGLDSILPVISALVTMYGRCGK 336

Query: 195 IDRAK--------FDIVSWNSIISA---HFNTLKPLTYFEEMESFGVLVDSVTTPVSLLS 254
           ++  +         D+VSWNS+IS+   H    K +  FEEM + G     VT  VS+L 
Sbjct: 337 LEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTF-VSVLG 396

Query: 255 TFSLLGLVKEGEKL------------------CL--LMG-------ISSVTGRMEIEPGP 295
             S  GLV+EG++L                  C+  L+G        + +   M  EPGP
Sbjct: 397 ACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGP 456

The following BLAST results are available for this feature:

BLAST of Sed0016773 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901542.1	1.8e-84	53.44	pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Benincasa ...	[more]
KAA0067680.1	5.9e-83	52.07	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK23684...	[more]
XP_016898932.1	5.9e-83	52.07	PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic ...	[more]
XP_023549868.1	2.9e-82	51.79	pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita ...	[more]
XP_022993795.1	5.0e-82	52.07	pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Cucurbita ...	[more]

BLAST of Sed0016773 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SB36	2.9e-56	37.64	Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidop...	[more]
Q9SY02	4.8e-19	26.07	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
Q9SN39	1.1e-18	24.86	Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t...	[more]
Q9CA54	3.4e-17	27.08	Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX...	[more]
Q9STF3	7.6e-17	29.09	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]

BLAST of Sed0016773 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJ70	2.8e-83	52.07	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DSF7	2.8e-83	52.07	pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucumis ...	[more]
A0A6J1JZI1	2.4e-82	52.07	pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucurbit...	[more]
A0A0A0L5M0	5.4e-82	51.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176270 PE=4 SV=1	[more]
A0A6J1FPF9	2.0e-81	51.52	pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Cucurbit...	[more]

BLAST of Sed0016773 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25270.1	2.0e-57	37.64	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G02750.1	3.4e-20	26.07	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18750.1	7.5e-20	24.86	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G74630.1	2.4e-18	27.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G46790.1	5.4e-18	29.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 14..38 e-value: 0.09 score: 13.1 coord: 77..98 e-value: 0.15 score: 12.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 142..286 e-value: 1.9E-8 score: 35.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..141 e-value: 2.7E-9 score: 38.9
None	No IPR available	PANTHER	PTHR47925:SF105	SUBFAMILY NOT NAMED	coord: 6..65 coord: 74..244 coord: 249..286
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 6..65 coord: 74..244 coord: 249..286

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016773.1	Sed0016773.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
molecular_function	GO:0019205	nucleobase-containing compound kinase activity
molecular_function	GO:0005515	protein binding