Sed0016745 (gene) Chayote v1

Overview
NameSed0016745
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG05: 5351290 .. 5353422 (+)
RNA-Seq ExpressionSed0016745
SyntenySed0016745
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATGATGTTGATCTAAAGTATGTAAGTAGAAAAAAAAAATTTGTTTAAAAAAAATGAAGAAGAGAGTAGAATTCTAAGTAAAGACAAGCATAATTTAGTTTGTATATAATATTTTTGTATATTGGTAAGGAAAGATAGTGATACAGAAGTTTTATTTCAAACAGAAAATAGATAAAGTTGTGGTTCAGTAGTTGTAGTTTGAAGGCATTCTCTGATTCCCTTCAATCTAGTTACCTTCCTCTCCTTTCAGTTCTGAAAAAACAGCCAAAAAAAAAAAAAAAAATGTTTTATATCATAAATTATTATAACAGAATAATAATTATGTTTTATATCATAAATTATTATAACAGAAATGGTTTGAAATGATAAAATATTCAAAGTTATAAAAGTATTTCATGTGTTTATAGGTAAATAAAATAATTAAGGCCCCTTTTGATAACCGTCGTTTTTTTTTTTGTTTATAAAATTAAAGCCTATTTTTACCCAAATTTCCTATTATGTGCTTATCTTTCCTACAATATATCCATATTTCCTTAAAGAAAGTAGGTGCATACTAATCAAATTTCAAAAAAAACAAAACAAGCTTTTGGAAGCTACTTTTTTTTATTTACAAATTTTGGTTTTGTTTATTAAAATATAGATAAGATGTAGATATCCAAATAAGAAAAAAATTATGGTAGGGGAGTTGTTGTAGGCTTAAATTTCAAAAACAAAAAATGAAAAAAATAAGGTTATCAACGGGGTCTAGCTTATTTGTTTTTCTAACTTAGATATTTCCATATAGCCTGGTCAATTCTTGAAAAAAAAGAAAAATAGAAAGTAGAAAATGAAAAATTGAAACTCTTTTCGGAGAAATACATTTTTAGTCTCTAGATTTTGAGATTATTTTTAATTTGGTCCTTAAGTTTCAAAATTGACCATTTTTAACACTGACATTTCAATAAAACTCACTTTTAGTCTTTGAGATAACAAATTTTTTAGTTACATATAGTAATGTTGTATGATAATTAGACGAATTTTAAATTGCAACATATTAATGAAGTGATTGTTTAATTTTCATATGAATTTAATTTTTTTTTTAAAAATAAGTATAAAAGTAAATTAAAATACCCACCAAAGATTAAAAGTTAATCAAATATGAGAAGTAAAAAATTGAAACTACGTCCCAAACCTAAGAACTTCCCAAATTTTTTAGTCTCTCGTGGTATGCAGCTAGGGGGGTCTTTTGGCTAGACGATTTGATGAATCCACCATCTACATGTTTCTTGTTAGGCTATCAATCCTTGTAAAAGTTTATAAGAAATGTTTAAGAGTAATGTTGGAGAAAGAGAACTAGCTTGCCTTCCTTAATTTAGTGACACTCATCGTCACTACTCTCGCTTTTGTAGCCAGAGCAATCCCCTTCCTTCTTTTTCCGATGTTCCTTCTTCGGCTTGCACGACCCTCCTGAATCGTCCTGCACCGCGCATGAGCCCTGGCCATGATTGTGACCGTGCTCAGCCACTGGACCCTGCCCGTGATGCTCCTCGTGTGCTACTGGCTGACACTGGTCGTATGCCGTTGACGAACCCTGCCCATGATACTCCCCGTGTGCCACATGTGGACCCTGCCCATGATGCTCGCCATGCGCCACATGTGGACCCTGGTTGTGGCCGTGTGCCCCCGGTGCACACTCATCGTGATGGTGGCCATGCACTACATGTGAACCCTGGCCGTGGCCGTGTGCCACCGGTGCACACTGCCCGTGATGGCCGCCATGTGGACCATGTCCATGATGGTGGCCATGCGGACCCTGTCCGTGATGGTGGCCATGCCCCACATGTGGACCGTGGCCGTGGCCATGTCCCGCTGGTGCACATTGCCCGTGATGGTGGCCATGCCCCCCATGTGGACCTTGGCCGTGGCCATGTCCCGCTGGTGCACATTGCCCGTGATGGTGGCCATGCCCCCCGTGTGGACCATGGCCGTGGCCGTGTGCCACTGGTGCACACTGCCCATGATGAGCGCCATGTGGACCATGCCCGTGATGGTGGCCATGAGGACCTTGTCCGTGATGGGGGCCATGCTGAGCTGGTTTGCCACACCGCTGAAAAGTCATGGATGCTAAAGATAGAGCGTTTGTTTTGA

mRNA sequence

ATGATTGATGATGTTGATCTAAACCAGAGCAATCCCCTTCCTTCTTTTTCCGATGTTCCTTCTTCGGCTTGCACGACCCTCCTGAATCGTCCTGCACCGCGCATGAGCCCTGGCCATGATTGTGACCGTGCTCAGCCACTGGACCCTGCCCGTGATGCTCCTCGTGTGCTACTGGCTGACACTGGTCGTATGCCGTTGACGAACCCTGCCCATGATACTCCCCGTGTGCCACATGTGGACCCTGCCCATGATGCTCGCCATGCGCCACATGTGGACCCTGGTTGTGGCCGTGTGCCCCCGGTGCACACTCATCGTGATGGTGGCCATGCACTACATGTGAACCCTGGCCGTGGCCGTGTGCCACCGGTGCACACTGCCCGTGATGGCCGCCATGTGGACCATGTCCATGATGGTGGCCATGCGGACCCTGTCCGTGATGGTGGCCATGCCCCACATGTGGACCGTGGCCGTGGCCATGTCCCGCTGGTGCACATTGCCCGTGATGGTGGCCATGCCCCCCATGTGGACCTTGGCCGTGGCCATGTCCCGCTGGTGCACATTGCCCGTGATGGTGGCCATGCCCCCCGTGTGGACCATGGCCGTGGCCGTGTGCCACTGGTGCACACTGCCCATGATGAGCGCCATGTGGACCATGCCCGTGATGGTGGCCATGAGGACCTTGTCCGTGATGGGGGCCATGCTGAGCTGGTTTGCCACACCGCTGAAAAGTCATGGATGCTAAAGATAGAGCGTTTGTTTTGA

Coding sequence (CDS)

ATGATTGATGATGTTGATCTAAACCAGAGCAATCCCCTTCCTTCTTTTTCCGATGTTCCTTCTTCGGCTTGCACGACCCTCCTGAATCGTCCTGCACCGCGCATGAGCCCTGGCCATGATTGTGACCGTGCTCAGCCACTGGACCCTGCCCGTGATGCTCCTCGTGTGCTACTGGCTGACACTGGTCGTATGCCGTTGACGAACCCTGCCCATGATACTCCCCGTGTGCCACATGTGGACCCTGCCCATGATGCTCGCCATGCGCCACATGTGGACCCTGGTTGTGGCCGTGTGCCCCCGGTGCACACTCATCGTGATGGTGGCCATGCACTACATGTGAACCCTGGCCGTGGCCGTGTGCCACCGGTGCACACTGCCCGTGATGGCCGCCATGTGGACCATGTCCATGATGGTGGCCATGCGGACCCTGTCCGTGATGGTGGCCATGCCCCACATGTGGACCGTGGCCGTGGCCATGTCCCGCTGGTGCACATTGCCCGTGATGGTGGCCATGCCCCCCATGTGGACCTTGGCCGTGGCCATGTCCCGCTGGTGCACATTGCCCGTGATGGTGGCCATGCCCCCCGTGTGGACCATGGCCGTGGCCGTGTGCCACTGGTGCACACTGCCCATGATGAGCGCCATGTGGACCATGCCCGTGATGGTGGCCATGAGGACCTTGTCCGTGATGGGGGCCATGCTGAGCTGGTTTGCCACACCGCTGAAAAGTCATGGATGCTAAAGATAGAGCGTTTGTTTTGA

Protein sequence

MIDDVDLNQSNPLPSFSDVPSSACTTLLNRPAPRMSPGHDCDRAQPLDPARDAPRVLLADTGRMPLTNPAHDTPRVPHVDPAHDARHAPHVDPGCGRVPPVHTHRDGGHALHVNPGRGRVPPVHTARDGRHVDHVHDGGHADPVRDGGHAPHVDRGRGHVPLVHIARDGGHAPHVDLGRGHVPLVHIARDGGHAPRVDHGRGRVPLVHTAHDERHVDHARDGGHEDLVRDGGHAELVCHTAEKSWMLKIERLF
Homology
BLAST of Sed0016745 vs. NCBI nr
Match: OXA39199.1 (hypothetical protein Fcan01_26054 [Folsomia candida])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-08
Identity = 52/118 (44.07%), Postives = 62/118 (52.54%), Query Frame = 0

Query: 102 HTHRDGGHALHVNPGRGRVPPVHTARDGRHVDHVHDG-GHADPVRDG-GHAPHVDRGRGH 161
           H HR  GH  HV+ GRG    VH  RD R+ DHVH G G+ D V+ G GH  HV RGRG+
Sbjct: 39  HVHRGRGHGDHVHRGRGHGDHVH--RDRRYGDHVHRGRGYGDHVQRGRGHGDHVHRGRGY 98

Query: 162 VPLVHIARDGGHAPHVDLGRGHVPLVHIARDGGHAPRVDHGRGRVPLVHTAHDERHVD 218
               H+ R  G+  HV  GRGH    H+ RD G+   V  GRG     H  H+    D
Sbjct: 99  GG--HVHRGRGYDGHVHRGRGHGD--HVHRDRGYGGLVHRGRGS---GHQEHESSGAD 147

BLAST of Sed0016745 vs. NCBI nr
Match: XP_003093512.1 (hypothetical protein CRE_27851 [Caenorhabditis remanei] >EFO94056.1 hypothetical protein CRE_27851 [Caenorhabditis remanei])

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-06
Identity = 65/198 (32.83%), Postives = 76/198 (38.38%), Query Frame = 0

Query: 71  HDTPRVPHVDPAH---DARHAPHVDPGC-GRVPPVHTHRDGGHALHVNPGRGRVPPVHTA 130
           H T    H D  H   +  HAPH + G  G     H H+DG HA H   G       HTA
Sbjct: 463 HHTAHHEHKDGHHAHGEHHHAPHHEHGTHGHHTVHHEHKDGHHAPHHEHGH------HTA 522

Query: 131 RDGRHVDHVHDGGHADP------------VRDGGHAPHVDRGRGHVPLVHIARDG----- 190
             G H  H    GH  P             +DG HAPH + G  H    H  +DG     
Sbjct: 523 HHGEHHAHGEHHGHHAPHHEHEYHTAHHEHKDGHHAPHNEHGTHHGH--HEHKDGHHAHG 582

Query: 191 --GHAPHVDLGRGHVPLVHIARDG--GHAPRVDHGRGRVPLVHTA--HDERHVDHARDGG 242
              HAPH + G  H    H    G   HAP  +HG       H    H   H +H    G
Sbjct: 583 EHHHAPHHEHGTHHTTHHHAPHHGEHHHAPHHEHGTHGHHTAHHGEHHHAPHHEHGTHHG 642

BLAST of Sed0016745 vs. ExPASy TrEMBL
Match: A0A226D1V0 (Uncharacterized protein OS=Folsomia candida OX=158441 GN=Fcan01_26054 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-09
Identity = 52/118 (44.07%), Postives = 62/118 (52.54%), Query Frame = 0

Query: 102 HTHRDGGHALHVNPGRGRVPPVHTARDGRHVDHVHDG-GHADPVRDG-GHAPHVDRGRGH 161
           H HR  GH  HV+ GRG    VH  RD R+ DHVH G G+ D V+ G GH  HV RGRG+
Sbjct: 39  HVHRGRGHGDHVHRGRGHGDHVH--RDRRYGDHVHRGRGYGDHVQRGRGHGDHVHRGRGY 98

Query: 162 VPLVHIARDGGHAPHVDLGRGHVPLVHIARDGGHAPRVDHGRGRVPLVHTAHDERHVD 218
               H+ R  G+  HV  GRGH    H+ RD G+   V  GRG     H  H+    D
Sbjct: 99  GG--HVHRGRGYDGHVHRGRGHGD--HVHRDRGYGGLVHRGRGS---GHQEHESSGAD 147

BLAST of Sed0016745 vs. ExPASy TrEMBL
Match: A0A2P4V1U7 (Uncharacterized protein (Fragment) OS=Caenorhabditis remanei OX=31234 GN=FL81_23552 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.4e-07
Identity = 65/198 (32.83%), Postives = 76/198 (38.38%), Query Frame = 0

Query: 71  HDTPRVPHVDPAH---DARHAPHVDPGC-GRVPPVHTHRDGGHALHVNPGRGRVPPVHTA 130
           H T    H D  H   +  HAPH + G  G     H H+DG HA H   G       HTA
Sbjct: 149 HHTAHHEHKDGHHAHGEHHHAPHHEHGTHGHHTVHHEHKDGHHAPHHEHGH------HTA 208

Query: 131 RDGRHVDHVHDGGHADP------------VRDGGHAPHVDRGRGHVPLVHIARDG----- 190
             G H  H    GH  P             +DG HAPH + G  H    H  +DG     
Sbjct: 209 HHGEHHAHGEHHGHHAPHHEHEYHTAHHEHKDGHHAPHNEHGTHHGH--HEHKDGHHAHG 268

Query: 191 --GHAPHVDLGRGHVPLVHIARDG--GHAPRVDHGRGRVPLVHTA--HDERHVDHARDGG 242
              HAPH + G  H    H    G   HAP  +HG       H    H   H +H    G
Sbjct: 269 EHHHAPHHEHGTHHTTHHHAPHHGEHHHAPHHEHGTHGHHTAHHGEHHHAPHHEHGTHHG 328

BLAST of Sed0016745 vs. ExPASy TrEMBL
Match: E3NDK4 (Uncharacterized protein OS=Caenorhabditis remanei OX=31234 GN=CRE_27851 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.4e-07
Identity = 65/198 (32.83%), Postives = 76/198 (38.38%), Query Frame = 0

Query: 71  HDTPRVPHVDPAH---DARHAPHVDPGC-GRVPPVHTHRDGGHALHVNPGRGRVPPVHTA 130
           H T    H D  H   +  HAPH + G  G     H H+DG HA H   G       HTA
Sbjct: 463 HHTAHHEHKDGHHAHGEHHHAPHHEHGTHGHHTVHHEHKDGHHAPHHEHGH------HTA 522

Query: 131 RDGRHVDHVHDGGHADP------------VRDGGHAPHVDRGRGHVPLVHIARDG----- 190
             G H  H    GH  P             +DG HAPH + G  H    H  +DG     
Sbjct: 523 HHGEHHAHGEHHGHHAPHHEHEYHTAHHEHKDGHHAPHNEHGTHHGH--HEHKDGHHAHG 582

Query: 191 --GHAPHVDLGRGHVPLVHIARDG--GHAPRVDHGRGRVPLVHTA--HDERHVDHARDGG 242
              HAPH + G  H    H    G   HAP  +HG       H    H   H +H    G
Sbjct: 583 EHHHAPHHEHGTHHTTHHHAPHHGEHHHAPHHEHGTHGHHTAHHGEHHHAPHHEHGTHHG 642

BLAST of Sed0016745 vs. ExPASy TrEMBL
Match: A0A803K4J7 (Uncharacterized protein OS=Xenopus tropicalis OX=8364 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 50/134 (37.31%), Postives = 63/134 (47.01%), Query Frame = 0

Query: 76  VPHVDPAHDARHAPHVDPGCGRVPPVHTHRDGGHALHVNPGRGRVPPVHTARDGRHVDHV 135
           VPH+ P   A    H+ P  G     H +   G   H++PGRG V P +  R G    H+
Sbjct: 153 VPHIYP--QAGGCTHIYPQAGGC--THIYPQAGGCTHISPGRGAV-PTYIPRQGGCTPHI 212

Query: 136 HDG----GHADPVRDGGHAPHVDRGRGHVPLVHIARDGGHAPHVDLGRGHVPLVHIARDG 195
             G     H  P + GG  PH+  GRG VP  +I R GG  PH+  GRG  P  HI+   
Sbjct: 213 SPGRGGCTHIYP-QAGGLYPHISPGRGAVP-TYIPRQGGCYPHISPGRGCTP--HISPGR 272

Query: 196 GHAPRVDHGRGRVP 206
           G  P +  GRG  P
Sbjct: 273 GLYPHISPGRGLYP 277

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OXA39199.11.1e-0844.07hypothetical protein Fcan01_26054 [Folsomia candida][more]
XP_003093512.11.3e-0632.83hypothetical protein CRE_27851 [Caenorhabditis remanei] >EFO94056.1 hypothetical... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A226D1V05.2e-0944.07Uncharacterized protein OS=Folsomia candida OX=158441 GN=Fcan01_26054 PE=4 SV=1[more]
A0A2P4V1U76.4e-0732.83Uncharacterized protein (Fragment) OS=Caenorhabditis remanei OX=31234 GN=FL81_23... [more]
E3NDK46.4e-0732.83Uncharacterized protein OS=Caenorhabditis remanei OX=31234 GN=CRE_27851 PE=4 SV=... [more]
A0A803K4J71.1e-0637.31Uncharacterized protein OS=Xenopus tropicalis OX=8364 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0016745.1Sed0016745.1mRNA