Sed0016634 (gene) Chayote v1

Overview


Name	Sed0016634
Type	gene
Organism	Sechium edule (Chayote v1)
Description	photosynthetic NDH subunit of subcomplex B 5, chloroplastic
Location	LG02: 49921585 .. 49926447 (+)
RNA-Seq Expression	Sed0016634
Synteny	Sed0016634

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCATTCTCCTCAGCCAAAAGGTTGGCGGGGATTTAAACCGCACGAATTAAAGAAGATAAAAACTCCCAAAAATGGCGCACTGTTCTTCTTCCCTCCCCGTTCTATCTTCTAATCCACTCCCCAAAATCATCTTCAAATCTTCCAAAATTAGGGCTACACCGTTCTCGATTCCAAGAATTCCGGCAATCAACGGAATCTCCGCCGCCAAGTTGCGCGGAAAATTAGCGAATGAAAGCCGCTTACGGCGGCCGAATGCCGGATTATCCCAAATCGAACCCGACTTAAACGAAGACCCTGTAGATCGTTGGGAGACCAACAGTGTTAGCGCTGTATGAACTGCTCTCCTTCTGCTCCCTCTGTTCCTCTTCTTATCTTGCTGATTTTGTTTTGTTGTTTTAGGGTTTCATGCTATGAATTGCGATAGAATTTAGATAAGTTTGAAATTGTATTTGGACTTCTTATTGGAACCTCTGACTGAGATTGTAGTAATTTTTTATTTCATTTCAGGAAGATTTTGAGTATGGAGTATACGATGGGCATCACACTTACTTTGAAGGCGAGAAAAAAGGTCAGTTCATTTAACTTGTATTATTGAGTTTATTTCCCTTCCTTGTTTGCCTGAATCTTTGAAATTTGAATGTTAGAATCTGGATGAACTTGTTCCTGTTTTGTCTTGAGTGGATTGTAGATTCGATCCTTAGAGGTGGTTCTTGATTATTGGAGCTCTTAGCTCTGTGAATTGGGTGTCTAAATTCTAGTTTTATATCTAAATGTCGTAAAACAGAGGTAGTTGAACGTGTAGGTTTGGGCTTCAGAGACATCGAAGGAGTAATGTTACAGTTGAGTCTTGAACTCAGGACCTTGAAGGGAGCATACTTTCAAAGCCCAAGTCTTCAATTGCTGCGCCTGCGCCTTTCCTTAGGGACAATTTTAGTCCGTTTGGATTAGAATCTCAAGCTTGGATTTTAGCTTTCCCATAAGTCTTTAAAGATCTAATTGGTGAGGATTCCACGATAGAAAAATGGGTAGAGCTCCTAGAATTTTTAAGATAGGTATACTATTTCTCTCATCAACAATTAACTTTGAGTTGTAACTTCATACTATCCAATACACTATTAATGTTCATTAAACCTAAAGGATTATTTAGTCTAATAAAAATAAAATTGGGTTCCAATCCAAGATTAGTGAACCCAAAAGAGACTCAATTTTGAAGAACATATTGAGGATTCCATATTGGAAAAGTGAAATCTCTTAACATATATAAGTTATGTGGGGTTATTCTCATTGATCATCACCATTTGGTTTTGAAATGGAACTCACGCTATCACATCCTAATTTCGTGAGTTATAGAGCCAAGACTTCCCCATGTTTCACTGCCATCATGGTCGGATCAAGGTGAAAATAAATTGTTTTTAGGGGTGCAACACTAGAACTTCCCAATTGGTCACCGAACTTAGTACTACACTTGCCCAAGCACACTTAATTGCGGAATTCTGATGGGATTCGGCTAAGAAGCACAGACACGGACACGAACACGAGATATGGACACGACATGATACGGACACGTAGACACCATTATTTAAAAATGTAGGACACAGATACGTTGAGGACTCGCGATTTATTATTATTTTTTTATAATATACTATTAAAAGATGAAATTTGAAGTGGAGAATGTATAGCAGCTACTACAACAACTGCACCTTTTTAGTTAGTTATAAGCCTACCTATAATAATCTCTAAATATTTTAGTTTTTATCTCATTTTCCTTCCCTCCATTTTATTTTCTCTCATTCTTTCCTTTTTTTAATTTTAGTCCATCTATCTTTGATAGATATTGTCGTCGACAACCTCCACCAACACTACCGGTTGTCGTGTCATTCGCAATTGGAAACAAATAAGTCTTAATTGAGGTGTCCATGAAGTGTCCGAAATTAAAAATAATAATAATAACATAGGACACGGAATTTTGAGTGTTCAACACTTATCCGATGAGTGTCTAGAAGTATCAATGTTGGACACGAGTACAGCACAGATACACTGTCAAAATAGAAGTGTTCGTGCTTCCTAGGGATCTGGTGCATTAGTGGTGGTATGATCGCACCCCCAAGGTGAAAATAAAATTGCAACCCCACTTTGAATATGTGCATGTTGAATATGTCTAACATGAACCTAGTTCAAATTGTAATGACATATATCTGACTGATTGAAGGTTCGAATCTCCACACTCACATATCATTGAACTCAATTATCATCTCGAGCATGTGACATTTAAAATCGTAAAAAGTGTTCTAATTAATGTAGAACACTTTAAATTTATCATGATGTGTAATATTGTTATATGGCTGGACTTTTTTTTTCTTTTGAAAATTTAAAGAACACTTAAAACCGTACTTGGGAATTTTTTTTCGATGTTGAAACCGTACTTAGGAATTAGGAAGAACAATTCACTTCCATTATGCCATCATAGTTGAGCCTCTAGGTGAATCCGTTAATCAACAATCTCACTCAGAATGTATAACAACTGACCTTTAGTATAGTGAAAAACGTTTTTTCTTAAAGAGTGAAAAGCATTTTAATCCATCACTAAAAACACTTCAGAAGTGCTCACGGTTTTTGTTTGTATGAGTAGAAGTAGTGCTTAAAATGTAAAGGAAACTTCAAACCAAGAAAAACTAATTTTTTCAACATTCCGAAAAGTACTTCATTTGCACCAACTTTAAAGTTACTCCAAACTCACTTTCAGCCAGTCAAATTGAGAAATCGATAATAGTGTTGTGTATGCGACCAGAGTCCCCCGGTGTAGAACAAAGAAGAATCAATGGCTCGGAATATTCTTTGATGCAGTAACCAACTAGTTTTTGTACCATGGTGATAAGGTTGGGCCTAGGGCTCTATTTAGCTTACTTAGAGAATAAGTTAGTATTTTGTTATAAATAGAGTGGGTTAGGTTAGAGTTTAGGCATCCAATTATTGAGTCAGTTATTGAGTGGTTTATTGTAGGGCTCAAGAGATTCTCTTGAGAGGGGAGGTTCCAAGACCTATCAAAACTTGGCTTATCTTGTATTCTTTTACTTTTGATATAATCTAGATCCTGGATCATATCAATTGGTATCAGAGCCGTTTCGATTCTTGGTTGTAGAGATGGATCTAGAAAATGTTCGCTTATTTCAAGAGTTGTGGCAAAATTTTTACAATGACATGAAAAGTTATTTTAGAGAGATAAGAGAGGAAAGTGCAAGGGAGCAGGAACAAAGAAGATTAGAAAGGGAGGAGCAGTCCAAGGCAAGAGAACAATGGTACTCAGAGATGGAAGCTAGGATTCGAGGAAGAAGGGAGGTTGTGGAAGAAACAGTGACGGTTAAGGTTTTGACACCGCCACCTCCGCTGCTGCCGTCACCACCTCCACCACCACCATCGCCGCCACCACCTCCGACATCGCCGCTGCCACCTCCGCCGCCACCACCGCTACCGCCATCGCCACCACCTCTGACATCGCCGCCGCCACCACCGCTGCCATCTTCGCCACCAACTGCGCCACCACCTCCGCCACCAACGCCGCCGTTTCCGCCACCACCGACGCGCCGCTGCCACAATTGCCGCTGCTGCCGCCGGAAAAAAAAAAAAGAAAAAAGAAAAAAAGAAAAAGAAAAAGATGTTTTCATTTTTTATTTTTCTATTTTTGTGTATGCCCACCTTGAGGACAAGGTGCTTTAAAGGGGCGGGTATTGATAAGGTTGGGCCTAGGGCTCGGTTGGGCCTAGGGCTCTATTTAGCTATTACTTAGAGAATAAGTTAGTATTTTGTTATAAATAGAGTGAGTTAGGTTAGGGTTTAGGCATCCAATTATTGAGTGAGTTATTGAGTGATTTATTGTAGGGCTCAAGAGATTCTCTTGAGAGGGGAGGTTCCAAGACCTATCAAAACTTGGCTTATCTTGTATTAGTTTACTTTTGATATAATCTAGATTCTGGATCATATCACATGGATATTCCTCTTGTAAAATCATTGGTTAGTAACTGCTGGTTCTGATTACTTTTCACTGGTAACTTCTTCTCAGGAACATCATTCTGGGGAGCCATTGCAGACGATATTGCAGCAGTTGGACCCCCAACAGGCTTTCAGGGTAAACCATTGTCACTCTCAGAAAACTCAAATCCTTTGACTTCAACATTCAGTATCATATCATCTTCCCATTTTTTTGCAGGCTTAATCTCATGGCTCTTCCTACCAGCAGTTGCTGCTGGGATGTACTTCAATGTTCCGGTAATTTTGAATTATATCTCCGAACGCCATTGATCCCCTTCTTTGCTATTTTCGGGGACACTTAGTTCTTATTAGGGACTGTGTTTCAGGGGGAGTATCTATACATTGGAGCAGCTGTATTTACAGTAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAACCACACAATTTTGAACCTCAAATATATAACATGGAGCGGGGCGCTCGTGACAAGTTGATATCGGATTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGTGACTTGTGGGATTTCACTGTGAAGAACGATGATATAACAAAGACTTGATTGCTAATTGCTACTCAGTAATGTGATGTGAGTTACAATTCGTTATCTAAATCATTATGAAAATGTATATCATATAACACTATGTTTAGTCTTGTCTTATAATGGATGTAAATTGTAACTATGAAATGAACCTATTATCAACCGTATAGCAAGAGTTTTACTCTTGTATTTCTTTTGACCATCTTTTGTATTATATACAGTGTTCTGTACAGCTCTGAAGGAATACTGTTTCCATTTGAAGTATTGAAGTAAATCAATTTGGATATAGAAAATTCTAT

mRNA sequence

GGCCATTCTCCTCAGCCAAAAGGTTGGCGGGGATTTAAACCGCACGAATTAAAGAAGATAAAAACTCCCAAAAATGGCGCACTGTTCTTCTTCCCTCCCCGTTCTATCTTCTAATCCACTCCCCAAAATCATCTTCAAATCTTCCAAAATTAGGGCTACACCGTTCTCGATTCCAAGAATTCCGGCAATCAACGGAATCTCCGCCGCCAAGTTGCGCGGAAAATTAGCGAATGAAAGCCGCTTACGGCGGCCGAATGCCGGATTATCCCAAATCGAACCCGACTTAAACGAAGACCCTGTAGATCGTTGGGAGACCAACAGTGTTAGCGCTGAAGATTTTGAGTATGGAGTATACGATGGGCATCACACTTACTTTGAAGGCGAGAAAAAAGGAACATCATTCTGGGGAGCCATTGCAGACGATATTGCAGCAGTTGGACCCCCAACAGGCTTTCAGGGCTTAATCTCATGGCTCTTCCTACCAGCAGTTGCTGCTGGGATGTACTTCAATGTTCCGGGGGAGTATCTATACATTGGAGCAGCTGTATTTACAGTAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAACCACACAATTTTGAACCTCAAATATATAACATGGAGCGGGGCGCTCGTGACAAGTTGATATCGGATTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGTGACTTGTGGGATTTCACTGTGAAGAACGATGATATAACAAAGACTTGATTGCTAATTGCTACTCAGTAATGTGATGTGAGTTACAATTCGTTATCTAAATCATTATGAAAATGTATATCATATAACACTATGTTTAGTCTTGTCTTATAATGGATGTAAATTGTAACTATGAAATGAACCTATTATCAACCGTATAGCAAGAGTTTTACTCTTGTATTTCTTTTGACCATCTTTTGTATTATATACAGTGTTCTGTACAGCTCTGAAGGAATACTGTTTCCATTTGAAGTATTGAAGTAAATCAATTTGGATATAGAAAATTCTAT

Coding sequence (CDS)

ATGGCGCACTGTTCTTCTTCCCTCCCCGTTCTATCTTCTAATCCACTCCCCAAAATCATCTTCAAATCTTCCAAAATTAGGGCTACACCGTTCTCGATTCCAAGAATTCCGGCAATCAACGGAATCTCCGCCGCCAAGTTGCGCGGAAAATTAGCGAATGAAAGCCGCTTACGGCGGCCGAATGCCGGATTATCCCAAATCGAACCCGACTTAAACGAAGACCCTGTAGATCGTTGGGAGACCAACAGTGTTAGCGCTGAAGATTTTGAGTATGGAGTATACGATGGGCATCACACTTACTTTGAAGGCGAGAAAAAAGGAACATCATTCTGGGGAGCCATTGCAGACGATATTGCAGCAGTTGGACCCCCAACAGGCTTTCAGGGCTTAATCTCATGGCTCTTCCTACCAGCAGTTGCTGCTGGGATGTACTTCAATGTTCCGGGGGAGTATCTATACATTGGAGCAGCTGTATTTACAGTAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAACCACACAATTTTGAACCTCAAATATATAACATGGAGCGGGGCGCTCGTGACAAGTTGATATCGGATTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGTGACTTGTGGGATTTCACTGTGAAGAACGATGATATAACAAAGACTTGA

Protein sequence

MAHCSSSLPVLSSNPLPKIIFKSSKIRATPFSIPRIPAINGISAAKLRGKLANESRLRRPNAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIAAVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT

Homology

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BLAST of Sed0016634 vs. NCBI nr
Match: XP_022948649.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata] >XP_022948658.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata])

HSP 1 Score: 399.4 bits (1025), Expect = 2.0e-107
Identity = 202/224 (90.18%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 1   MAHCSSSLPVLSSNPLPKIIFKSSKIRATPFSIPRIPAINGISAAKLRGKLANESRLRRP 60
           MA C SSLPVLS NPLPKIIFKSS IRAT FS   IP INGISAAKL GK A  SRLRR 
Sbjct: 1   MALC-SSLPVLSFNPLPKIIFKSSGIRATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60

Query: 61  N-AGLSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIA 120
           N AGLS+IEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGT FWGAIADDIA
Sbjct: 61  NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGT-FWGAIADDIA 120

Query: 121 AVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEP 180
           AVGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAAVFT+VFCIIEMDKPDQPHNFEP
Sbjct: 121 AVGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEP 180

Query: 181 QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 224
           QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222

[Close]

BLAST of Sed0016634 vs. NCBI nr
Match: KAG7028861.1 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398.3 bits (1022), Expect = 4.4e-107
Identity = 201/224 (89.73%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 1   MAHCSSSLPVLSSNPLPKIIFKSSKIRATPFSIPRIPAINGISAAKLRGKLANESRLRRP 60
           MA C SSLPVLS NPLPKIIFKSS+I AT FS   IP INGISAAKL GK A  SRLRR 
Sbjct: 1   MALC-SSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60

Query: 61  N-AGLSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIA 120
           N AGLS+IEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGT FWGAIADDIA
Sbjct: 61  NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGT-FWGAIADDIA 120

Query: 121 AVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEP 180
           AVGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAAVFT+VFCIIEMDKPDQPHNFEP
Sbjct: 121 AVGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEP 180

Query: 181 QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 224
           QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222

[Close]

BLAST of Sed0016634 vs. NCBI nr
Match: XP_022974431.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022974433.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucurbita maxima] >XP_022974434.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_023540737.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023540738.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397.1 bits (1019), Expect = 9.9e-107
Identity = 201/224 (89.73%), Postives = 204/224 (91.07%), Query Frame = 0


Query: 1   MAHCSSSLPVLSSNPLPKIIFKSSKIRATPFSIPRIPAINGISAAKLRGKLANESRLRRP 60
           MA C SSLPVLS NPLPKIIFKSS I AT FS   IP INGISAAKL GK A  SRLRR 
Sbjct: 1   MALC-SSLPVLSFNPLPKIIFKSSGISATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60

Query: 61  N-AGLSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIA 120
           N AGLS+IEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGT FWGAIADDIA
Sbjct: 61  NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGT-FWGAIADDIA 120

Query: 121 AVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEP 180
           AVGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAAVFT+VFCIIEMDKPDQPHNFEP
Sbjct: 121 AVGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEP 180

Query: 181 QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 224
           QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222

[Close]

BLAST of Sed0016634 vs. NCBI nr
Match: KAA0049312.1 (photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa] >TYK17246.1 photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa])

HSP 1 Score: 391.3 bits (1004), Expect = 5.4e-105
Identity = 194/221 (87.78%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 5   SSSLPVLSSNPLPKIIFKSSKIRATPFSIPRIPAINGISAAKLRGKLANESRLRRPN-AG 64
           SSSLPVLS NP+PKIIF SS+I A PFSI  I   NGIS++KL GKL   S  RR N AG
Sbjct: 4   SSSLPVLSFNPIPKIIFGSSEIVAAPFSIQTIQGSNGISSSKLLGKLTRRSLSRRLNAAG 63

Query: 65  LSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIAAVGP 124
           LS+IEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGT FWGAIADDIAAVGP
Sbjct: 64  LSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGT-FWGAIADDIAAVGP 123

Query: 125 PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEPQIYN 184
           PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAA+FT+VFCIIE+DKPDQPHNFEPQIYN
Sbjct: 124 PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYN 183

Query: 185 MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 225
           MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 184 MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223

[Close]

BLAST of Sed0016634 vs. NCBI nr
Match: XP_008438595.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 391.0 bits (1003), Expect = 7.1e-105
Identity = 194/221 (87.78%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 5   SSSLPVLSSNPLPKIIFKSSKIRATPFSIPRIPAINGISAAKLRGKLANESRLRRPN-AG 64
           SSSLPVLS NP+PKIIF SS+I A PFSI  I   NGIS++KL GKL   S  RR N AG
Sbjct: 4   SSSLPVLSFNPIPKIIFGSSEIVAAPFSIQTIRGSNGISSSKLLGKLTRRSLSRRLNAAG 63

Query: 65  LSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIAAVGP 124
           LS+IEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGT FWGAIADDIAAVGP
Sbjct: 64  LSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGT-FWGAIADDIAAVGP 123

Query: 125 PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEPQIYN 184
           PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAA+FT+VFCIIE+DKPDQPHNFEPQIYN
Sbjct: 124 PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYN 183

Query: 185 MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 225
           MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 184 MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223

[Close]

BLAST of Sed0016634 vs. ExPASy Swiss-Prot
Match: Q9FG89 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB5 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.1e-71
Identity = 121/160 (75.62%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 62  AGLSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIAAV 121
           AGLSQIEPD+NEDP+ ++ETNS+  EDF+YG YDG HTY+EGE +  +FWGAIADDIAAV
Sbjct: 50  AGLSQIEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAV 109

Query: 122 GPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEPQI 181
               GFQGLIS +FLPA+A GMYF+ PGEYL+IGAA+FTVVFCIIEMDKPDQPHNFEPQI
Sbjct: 110 DQTNGFQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQPHNFEPQI 169

Query: 182 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI 222
           Y +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI
Sbjct: 170 YKLERGARDKLINDYNTMSIWDFNDKYGDVWDFTIEKDDI 209

[Close]

BLAST of Sed0016634 vs. ExPASy TrEMBL
Match: A0A6J1GAI7 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452262 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 9.6e-108
Identity = 202/224 (90.18%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 1   MAHCSSSLPVLSSNPLPKIIFKSSKIRATPFSIPRIPAINGISAAKLRGKLANESRLRRP 60
           MA C SSLPVLS NPLPKIIFKSS IRAT FS   IP INGISAAKL GK A  SRLRR 
Sbjct: 1   MALC-SSLPVLSFNPLPKIIFKSSGIRATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60

Query: 61  N-AGLSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIA 120
           N AGLS+IEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGT FWGAIADDIA
Sbjct: 61  NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGT-FWGAIADDIA 120

Query: 121 AVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEP 180
           AVGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAAVFT+VFCIIEMDKPDQPHNFEP
Sbjct: 121 AVGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEP 180

Query: 181 QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 224
           QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222

[Close]

BLAST of Sed0016634 vs. ExPASy TrEMBL
Match: A0A6J1IBC3 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473099 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 4.8e-107
Identity = 201/224 (89.73%), Postives = 204/224 (91.07%), Query Frame = 0


Query: 1   MAHCSSSLPVLSSNPLPKIIFKSSKIRATPFSIPRIPAINGISAAKLRGKLANESRLRRP 60
           MA C SSLPVLS NPLPKIIFKSS I AT FS   IP INGISAAKL GK A  SRLRR 
Sbjct: 1   MALC-SSLPVLSFNPLPKIIFKSSGISATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60

Query: 61  N-AGLSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIA 120
           N AGLS+IEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGT FWGAIADDIA
Sbjct: 61  NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGT-FWGAIADDIA 120

Query: 121 AVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEP 180
           AVGPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAAVFT+VFCIIEMDKPDQPHNFEP
Sbjct: 121 AVGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEP 180

Query: 181 QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 224
           QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 QIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222

[Close]

BLAST of Sed0016634 vs. ExPASy TrEMBL
Match: A0A5A7U0K2 (Photosynthetic NDH subunit of subcomplex B 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00970 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.6e-105
Identity = 194/221 (87.78%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 5   SSSLPVLSSNPLPKIIFKSSKIRATPFSIPRIPAINGISAAKLRGKLANESRLRRPN-AG 64
           SSSLPVLS NP+PKIIF SS+I A PFSI  I   NGIS++KL GKL   S  RR N AG
Sbjct: 4   SSSLPVLSFNPIPKIIFGSSEIVAAPFSIQTIQGSNGISSSKLLGKLTRRSLSRRLNAAG 63

Query: 65  LSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIAAVGP 124
           LS+IEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGT FWGAIADDIAAVGP
Sbjct: 64  LSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGT-FWGAIADDIAAVGP 123

Query: 125 PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEPQIYN 184
           PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAA+FT+VFCIIE+DKPDQPHNFEPQIYN
Sbjct: 124 PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYN 183

Query: 185 MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 225
           MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 184 MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223

[Close]

BLAST of Sed0016634 vs. ExPASy TrEMBL
Match: A0A1S3AXF4 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483655 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 3.4e-105
Identity = 194/221 (87.78%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 5   SSSLPVLSSNPLPKIIFKSSKIRATPFSIPRIPAINGISAAKLRGKLANESRLRRPN-AG 64
           SSSLPVLS NP+PKIIF SS+I A PFSI  I   NGIS++KL GKL   S  RR N AG
Sbjct: 4   SSSLPVLSFNPIPKIIFGSSEIVAAPFSIQTIRGSNGISSSKLLGKLTRRSLSRRLNAAG 63

Query: 65  LSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIAAVGP 124
           LS+IEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGT FWGAIADDIAAVGP
Sbjct: 64  LSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGT-FWGAIADDIAAVGP 123

Query: 125 PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEPQIYN 184
           PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAA+FT+VFCIIE+DKPDQPHNFEPQIYN
Sbjct: 124 PTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYN 183

Query: 185 MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 225
           MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 184 MERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223

[Close]

BLAST of Sed0016634 vs. ExPASy TrEMBL
Match: A0A0A0L8H7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144120 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.5e-105
Identity = 197/226 (87.17%), Postives = 206/226 (91.15%), Query Frame = 0


Query: 1   MAHCSSSLPVLSSNPLPKIIFKSSK-IRATPFSIPRIPAINGISAAKLRGKLANES-RLR 60
           MA C SSLPVLS NP+PKIIFKSS+ I ATPFSI +I   NGIS++KL GKL   S  LR
Sbjct: 1   MALC-SSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLR 60

Query: 61  RPNAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDI 120
              AGLS+IEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGT FWGAIADDI
Sbjct: 61  LNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGT-FWGAIADDI 120

Query: 121 AAVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFE 180
           AAVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAA+FT+VFCIIE+DKPDQPHNFE
Sbjct: 121 AAVGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFE 180

Query: 181 PQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 225
           PQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 PQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224

[Close]

BLAST of Sed0016634 vs. TAIR 10
Match: AT5G43750.1 (NAD(P)H dehydrogenase 18 )

HSP 1 Score: 269.6 bits (688), Expect = 2.2e-72
Identity = 121/160 (75.62%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 62  AGLSQIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTSFWGAIADDIAAV 121
           AGLSQIEPD+NEDP+ ++ETNS+  EDF+YG YDG HTY+EGE +  +FWGAIADDIAAV
Sbjct: 50  AGLSQIEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAV 109

Query: 122 GPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAVFTVVFCIIEMDKPDQPHNFEPQI 181
               GFQGLIS +FLPA+A GMYF+ PGEYL+IGAA+FTVVFCIIEMDKPDQPHNFEPQI
Sbjct: 110 DQTNGFQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQPHNFEPQI 169

Query: 182 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI 222
           Y +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI
Sbjct: 170 YKLERGARDKLINDYNTMSIWDFNDKYGDVWDFTIEKDDI 209

The following BLAST results are available for this feature:

BLAST of Sed0016634 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948649.1	2.0e-107	90.18	photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata]...	[more]
KAG7028861.1	4.4e-107	89.73	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita ...	[more]
XP_022974431.1	9.9e-107	89.73	photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbit...	[more]
KAA0049312.1	5.4e-105	87.78	photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa] >TYK1724...	[more]
XP_008438595.1	7.1e-105	87.78	PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X...	[more]

BLAST of Sed0016634 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FG89	3.1e-71	75.63	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Sed0016634 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAI7	9.6e-108	90.18	photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1IBC3	4.8e-107	89.73	photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 OS=Cucurb...	[more]
A0A5A7U0K2	2.6e-105	87.78	Photosynthetic NDH subunit of subcomplex B 5 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3AXF4	3.4e-105	87.78	photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 OS=Cucumi...	[more]
A0A0A0L8H7	4.5e-105	87.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144120 PE=4 SV=1	[more]

BLAST of Sed0016634 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43750.1	2.2e-72	75.63	NAD(P)H dehydrogenase 18	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034569	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic	PANTHER	PTHR36399	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 5, CHLOROPLASTIC	coord: 5..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016634.1	Sed0016634.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane