Sed0016605 (gene) Chayote v1

Overview
NameSed0016605
Typegene
OrganismSechium edule (Chayote v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationLG01: 14625237 .. 14625560 (+)
RNA-Seq ExpressionSed0016605
SyntenySed0016605
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGTGGCTGGAATATATATCCGAGACGCCCCCTCTTGGAGCGTGAATTTGATACCCTTGCTTCATTATCTCATTCTTGGAAAAGACCGTCGACTTCTCCTATTGAAGACCAAATTCAATGGGAACACGAAAAGAATGGAATATTCAGTGTTAATTCTCTTCGTGGCAAGCTCGATTCTAGACAACCGATCCCTGGCAAATCCATTGTGCCGACGCTTTGGAACTTAACTATCCCGAAAAAATGCAAAATCTTTCTTTGGTGCCTTTTCTATGGCGGAATTAATACTAGCGAAATATCTCAAAAGAGAAACCCCACCTGA

mRNA sequence

ATGAGCGGTGGCTGGAATATATATCCGAGACGCCCCCTCTTGGAGCGTGAATTTGATACCCTTGCTTCATTATCTCATTCTTGGAAAAGACCGTCGACTTCTCCTATTGAAGACCAAATTCAATGGGAACACGAAAAGAATGGAATATTCAGTGTTAATTCTCTTCGTGGCAAGCTCGATTCTAGACAACCGATCCCTGGCAAATCCATTGTGCCGACGCTTTGGAACTTAACTATCCCGAAAAAATGCAAAATCTTTCTTTGGTGCCTTTTCTATGGCGGAATTAATACTAGCGAAATATCTCAAAAGAGAAACCCCACCTGA

Coding sequence (CDS)

ATGAGCGGTGGCTGGAATATATATCCGAGACGCCCCCTCTTGGAGCGTGAATTTGATACCCTTGCTTCATTATCTCATTCTTGGAAAAGACCGTCGACTTCTCCTATTGAAGACCAAATTCAATGGGAACACGAAAAGAATGGAATATTCAGTGTTAATTCTCTTCGTGGCAAGCTCGATTCTAGACAACCGATCCCTGGCAAATCCATTGTGCCGACGCTTTGGAACTTAACTATCCCGAAAAAATGCAAAATCTTTCTTTGGTGCCTTTTCTATGGCGGAATTAATACTAGCGAAATATCTCAAAAGAGAAACCCCACCTGA

Protein sequence

MSGGWNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPGKSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNPT
Homology
BLAST of Sed0016605 vs. NCBI nr
Match: KAA0037436.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 6.3e-11
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 5   WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQP 64
           WN++PRRPL +RE +   +L    K  + +  ++ + W     G ++  S + +L S +P
Sbjct: 620 WNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAASAKRQLLSERP 679

Query: 65  IPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNP 107
            P    ++   TLW   +PKK K F+W LF+  INT+++ QKR P
Sbjct: 680 TPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLP 724

BLAST of Sed0016605 vs. NCBI nr
Match: TYK00226.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 6.3e-11
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 5   WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQP 64
           WN++PRRPL +RE +   +L    K  + +  ++ + W     G ++  S + +L S +P
Sbjct: 595 WNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAASAKRQLLSERP 654

Query: 65  IPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNP 107
            P    ++   TLW   +PKK K F+W LF+  INT+++ QKR P
Sbjct: 655 TPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLP 699

BLAST of Sed0016605 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09
Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 5   WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLD 64
           WNI+  RPL + E     +L H+ K    +P+ D    +  W+   N IF   S++  L 
Sbjct: 705 WNIHVNRPLRDHE----KNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLS 764

Query: 65  SRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNP 107
                P     S+  TLW +  PKKCK F+W L +G INT++  QKR P
Sbjct: 765 EASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLP 809

BLAST of Sed0016605 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09
Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 5   WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLD 64
           WNI+  RPL + E     +L H+ K    +P+ D    +  W+   N IF   S++  L 
Sbjct: 799 WNIHVNRPLRDHE----KNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLS 858

Query: 65  SRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNP 107
                P     S+  TLW +  PKKCK F+W L +G INT++  QKR P
Sbjct: 859 EASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLP 903

BLAST of Sed0016605 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = 0

Query: 5   WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKL----D 64
           W++ PRR L E E+   A L +S         +D   W    NG+++V S++  L     
Sbjct: 306 WDLNPRRQLREWEYPLWAELKNSLNASFCENGKDSPTWTLNSNGLYTVASVKKALQQPDQ 365

Query: 65  SRQPIPGKSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNP 107
           S   +  ++    LW  +IPKKC  F+W L Y  +NT+E   KR P
Sbjct: 366 SLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLP 411

BLAST of Sed0016605 vs. ExPASy TrEMBL
Match: A0A5A7T5L3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00210 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 5   WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQP 64
           WN++PRRPL +RE +   +L    K  + +  ++ + W     G ++  S + +L S +P
Sbjct: 620 WNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAASAKRQLLSERP 679

Query: 65  IPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNP 107
            P    ++   TLW   +PKK K F+W LF+  INT+++ QKR P
Sbjct: 680 TPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLP 724

BLAST of Sed0016605 vs. ExPASy TrEMBL
Match: A0A5D3BPP1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00200 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 5   WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQP 64
           WN++PRRPL +RE +   +L    K  + +  ++ + W     G ++  S + +L S +P
Sbjct: 595 WNLHPRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAASAKRQLLSERP 654

Query: 65  IPG---KSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNP 107
            P    ++   TLW   +PKK K F+W LF+  INT+++ QKR P
Sbjct: 655 TPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLP 699

BLAST of Sed0016605 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 5   WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLD 64
           WNI+  RPL + E     +L H+ K    +P+ D    +  W+   N IF   S++  L 
Sbjct: 799 WNIHVNRPLRDHE----KNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLS 858

Query: 65  SRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNP 107
                P     S+  TLW +  PKKCK F+W L +G INT++  QKR P
Sbjct: 859 EASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLP 903

BLAST of Sed0016605 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 5   WNIYPRRPLLEREFDTLASLSHSWKRPSTSPIED----QIQWEHEKNGIFSVNSLRGKLD 64
           WNI+  RPL + E     +L H+ K    +P+ D    +  W+   N IF   S++  L 
Sbjct: 705 WNIHVNRPLRDHE----KNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLS 764

Query: 65  SRQPIPGK---SIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNP 107
                P     S+  TLW +  PKKCK F+W L +G INT++  QKR P
Sbjct: 765 EASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLP 809

BLAST of Sed0016605 vs. ExPASy TrEMBL
Match: A0A5A7VIU9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00940 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 36/108 (33.33%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 4   GWNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQ 63
           GWNI PRRPL ERE     S+  S  +  ++    +  W+   + ++SV S +       
Sbjct: 276 GWNINPRRPLNERENHIWESIKMSLPQIHSNRGISKPLWKPSDSNVYSVASAKDLAFKET 335

Query: 64  PIPGKS----IVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNPT 108
            IP ++     +  LW   IP+KCK F+W + +  +NT +  QKRNP+
Sbjct: 336 SIPRETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPS 383

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0037436.16.3e-1134.29LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK00226.16.3e-1134.29LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0044556.13.5e-0935.78LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.13.5e-0935.78LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0040037.11.3e-0833.02LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T5L33.1e-1134.29LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BPP13.1e-1134.29LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TIB81.7e-0935.78LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR151.7e-0935.78LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7VIU91.4e-0833.33LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0016605.1Sed0016605.1mRNA