Sed0016605 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCGGTGGCTGGAATATATATCCGAGACGCCCCCTCTTGGAGCGTGAATTTGATACCCTTGCTTCATTATCTCATTCTTGGAAAAGACCGTCGACTTCTCCTATTGAAGACCAAATTCAATGGGAACACGAAAAGAATGGAATATTCAGTGTTAATTCTCTTCGTGGCAAGCTCGATTCTAGACAACCGATCCCTGGCAAATCCATTGTGCCGACGCTTTGGAACTTAACTATCCCGAAAAAATGCAAAATCTTTCTTTGGTGCCTTTTCTATGGCGGAATTAATACTAGCGAAATATCTCAAAAGAGAAACCCCACCTGA ATGAGCGGTGGCTGGAATATATATCCGAGACGCCCCCTCTTGGAGCGTGAATTTGATACCCTTGCTTCATTATCTCATTCTTGGAAAAGACCGTCGACTTCTCCTATTGAAGACCAAATTCAATGGGAACACGAAAAGAATGGAATATTCAGTGTTAATTCTCTTCGTGGCAAGCTCGATTCTAGACAACCGATCCCTGGCAAATCCATTGTGCCGACGCTTTGGAACTTAACTATCCCGAAAAAATGCAAAATCTTTCTTTGGTGCCTTTTCTATGGCGGAATTAATACTAGCGAAATATCTCAAAAGAGAAACCCCACCTGA ATGAGCGGTGGCTGGAATATATATCCGAGACGCCCCCTCTTGGAGCGTGAATTTGATACCCTTGCTTCATTATCTCATTCTTGGAAAAGACCGTCGACTTCTCCTATTGAAGACCAAATTCAATGGGAACACGAAAAGAATGGAATATTCAGTGTTAATTCTCTTCGTGGCAAGCTCGATTCTAGACAACCGATCCCTGGCAAATCCATTGTGCCGACGCTTTGGAACTTAACTATCCCGAAAAAATGCAAAATCTTTCTTTGGTGCCTTTTCTATGGCGGAATTAATACTAGCGAAATATCTCAAAAGAGAAACCCCACCTGA MSGGWNIYPRRPLLEREFDTLASLSHSWKRPSTSPIEDQIQWEHEKNGIFSVNSLRGKLDSRQPIPGKSIVPTLWNLTIPKKCKIFLWCLFYGGINTSEISQKRNPT Homology
BLAST of Sed0016605 vs. NCBI nr
Match: KAA0037436.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 77.8 bits (190), Expect = 6.3e-11 Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0
BLAST of Sed0016605 vs. NCBI nr
Match: TYK00226.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 77.8 bits (190), Expect = 6.3e-11 Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0
BLAST of Sed0016605 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09 Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 0
BLAST of Sed0016605 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09 Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 0
BLAST of Sed0016605 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08 Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = 0
BLAST of Sed0016605 vs. ExPASy TrEMBL
Match: A0A5A7T5L3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00210 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11 Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0
BLAST of Sed0016605 vs. ExPASy TrEMBL
Match: A0A5D3BPP1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00200 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11 Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0
BLAST of Sed0016605 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09 Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 0
BLAST of Sed0016605 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09 Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 0
BLAST of Sed0016605 vs. ExPASy TrEMBL
Match: A0A5A7VIU9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00940 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08 Identity = 36/108 (33.33%), Postives = 56/108 (51.85%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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