Sed0016574 (gene) Chayote v1

Overview


Name	Sed0016574
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L28-2-like
Location	LG06: 619392 .. 621962 (-)
RNA-Seq Expression	Sed0016574
Synteny	Sed0016574

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAAGTTCCGGTTCATGTTTAGAATTAGGGTTTAGTATAAAAGGCAGGCAACTCCCTTTTCCATTCTCCCTTCCGAGTATAGTATCCAAACATAAACCCTAATCTCAAATCAGGTCTCTCAATTTGTCTCAACGATTTCGTTTGAATTCTCATTTTTGTTAGCTGTTCTTGAAATAAATTCTACGCATTTCTATGTTTACAGATTTTTCTGATGATTTTCAATCGCGTTGCAGGTCGAGAAGAAGATCATGGCGGCGGTTCCAGGGCAGCTGGTTTGGGAGATCGTGAAGAGGAACAACTCGTTTTTGGTGAAGGAGTTTGGGCGTGGAACGGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAATTTATACAATCTCAACTCCTACAAATATTCTGGTAACTCATCTCTTTAATCCCTTGATTGTTGAGGATTCTGTTTGAATATGGAGACTCGGAGATGGGATCTTAAGTATATTGTGTATTTATTTGATGGTTTATGAATATGACTGTTTCGTTCTGATTCAAAGGGATTAAATCAAGAAATTTTTATAATTAGGGTGTTGTCTGTTTAGATTTTTCCCTGAAATTTTGCTAATGAGCTAGCAGAGTATTGGTTTATTGTTTGGAATCTAGATTTTATTGATATATATATATGTCCATATGATTCATGTGTTGTGGTTATGGGGATGGGAATGGGCCAATTTGATTTAGTAGATAAATCATATGAATTGTTTCAATTACACTGGGTCTTGTACTTGTTCACTGAAGGATATGTGCTCTCGATACATTGAGTGCTTGGGATTATATGTTTGGTATTTGATTATGAAGTTTGCTTGACCGAATCCTCCGATTGCTAATCTATGTGCACGAGAAATATAATAATTTGAGTATTTAACTGCTGGTTGTTTTCTGTCTTAGAACAGTTTTGGTTTATTTTTCCTTCTAAATTGGAATTTGTTTTCAAACTTCATTAGGAGTGATGAAAAGTTTCAGGGGTTTTATTTTTCTTTTCGATTGATTTTGTGTTACATTGAAAATATCACTGCCAATATTAGGTTCAGTTTTTGCGTAGAGATTCAATAGGATTCTTGTGTTTTAGGTTTGGCCAACAAGAAAACTGTTACAATCCAACCTGGAGGCAAAGACCAATCAATATTGCTTGCAACAACTAAGAGCAAGAAACAGAACAAACCTTCTTCATTGCTTAATAAATCTTTGATGAAGAAAGAGTTCCGTAGGATGGCAAAGGCTGTATCAAATCAGGTATATACAGTCCAAGCATTTTATGTTACATTTTTTTGTTTCCTCTGAAGATTTATTTTTTTTATAGGAAACTAAAACTTTCGTTGTTTCCTCTGGTGATATAACTATATTTGTAGCACATATCCCTGTTTAGCAAATTAACTTGGTACATTTTCCTATAAAATGTACTTTATACGGTTGGAACATCCCTGATCATACAGTTAGAACATAATCGGCTGGAAGAAAACAAGGAACCTAAGACCTATGAAGCACAGACATGCACACAGATACGGGACGATACGTCAATTTCTTAAAAACTAAGATATAGATACGGGACTTATGTCAATTTCTTTTCGATTGATAGGTACGTTTGAGATATGACAATTTTACTAAAATAAAACGTGTGAAATTGAAGTTAGGTTAGCTTTTTTCTTTTTATAATTTTACTAAATAAAACATATGAAATTGAATTTCGTTTTAGTAGCAATAAAATGAGAATAATGGGCTCGACTCACTAAAATGAGTTTAATTTGGTGAATATAATGGGTTGGGCTCAAAAAAACGGCTTTTAAAAAATGCTAAAGCATTCTTACATATCCTGGCCGTTTCTTCTGCATATCTTCCCATGTCCAATATTAAAAAAATAAAATAAAAAATAAAATAAAAAATAAGATACTTCAATTGACGTATCTGGTACCTATCTTAGGTGTATCTTGACATATCTATGTCCGAAACGTATCTAATACAAGATTCTCAGCTCAAAATGGTGTGTCCGTGCTTTATAGCCTTATACCAGCTAGAAAATGCTTTGCTTCTAACCTCAAGACCCACCAACCCACCCTTTTTTCTTCCTAAGCTCCGTCCCATTCTTCTTAATCGAGTAGGATATGCGATGGAGATTAGGATGAGCTTTGCTGAATCGAACTTGCTTTAACTTCACACCCTCATGATATGCAGGTGGGAGATAACTACTACAGGCCAGACCTGAAGAAGGCTGCCTTAGCAAGACTGAGTGCTGTAAACAGGAGCCTTAAGGTTGCTAAGTCTGGAGTTAAGAAGAGGACCAGGCAAGCATTGAAGTCCAGGAAGTGAGAATTGAGAATTGAGAAATGGGATGTTGCATTTTTCTTTGTGTTTTTAGTTGGGAATGCCAACTTTGTAGTGCACTTTGAAATCCAAAGAGTAGTCTGGCTATAAATATTTTGCATTCCTATCATTATTTTCATGTTGTGAACTCTTGGCAGATAATCTTATGACTTTGTTTTGGTTAATATGTTATTCTAATTGCAGTTCAAAATTACTAGATATTTTGCAATCTTTCCCTGAG

mRNA sequence

ATTGAAGTTCCGGTTCATGTTTAGAATTAGGGTTTAGTATAAAAGGCAGGCAACTCCCTTTTCCATTCTCCCTTCCGAGTATAGTATCCAAACATAAACCCTAATCTCAAATCAGGTCGAGAAGAAGATCATGGCGGCGGTTCCAGGGCAGCTGGTTTGGGAGATCGTGAAGAGGAACAACTCGTTTTTGGTGAAGGAGTTTGGGCGTGGAACGGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAATTTATACAATCTCAACTCCTACAAATATTCTGGTTTGGCCAACAAGAAAACTGTTACAATCCAACCTGGAGGCAAAGACCAATCAATATTGCTTGCAACAACTAAGAGCAAGAAACAGAACAAACCTTCTTCATTGCTTAATAAATCTTTGATGAAGAAAGAGTTCCGTAGGATGGCAAAGGCTGTATCAAATCAGGTGGGAGATAACTACTACAGGCCAGACCTGAAGAAGGCTGCCTTAGCAAGACTGAGTGCTGTAAACAGGAGCCTTAAGGTTGCTAAGTCTGGAGTTAAGAAGAGGACCAGGCAAGCATTGAAGTCCAGGAAGTGAGAATTGAGAATTGAGAAATGGGATGTTGCATTTTTCTTTGTGTTTTTAGTTGGGAATGCCAACTTTGTAGTGCACTTTGAAATCCAAAGAGTAGTCTGGCTATAAATATTTTGCATTCCTATCATTATTTTCATGTTGTGAACTCTTGGCAGATAATCTTATGACTTTGTTTTGGTTAATATGTTATTCTAATTGCAGTTCAAAATTACTAGATATTTTGCAATCTTTCCCTGAG

Coding sequence (CDS)

ATGGCGGCGGTTCCAGGGCAGCTGGTTTGGGAGATCGTGAAGAGGAACAACTCGTTTTTGGTGAAGGAGTTTGGGCGTGGAACGGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAATTTATACAATCTCAACTCCTACAAATATTCTGGTTTGGCCAACAAGAAAACTGTTACAATCCAACCTGGAGGCAAAGACCAATCAATATTGCTTGCAACAACTAAGAGCAAGAAACAGAACAAACCTTCTTCATTGCTTAATAAATCTTTGATGAAGAAAGAGTTCCGTAGGATGGCAAAGGCTGTATCAAATCAGGTGGGAGATAACTACTACAGGCCAGACCTGAAGAAGGCTGCCTTAGCAAGACTGAGTGCTGTAAACAGGAGCCTTAAGGTTGCTAAGTCTGGAGTTAAGAAGAGGACCAGGCAAGCATTGAAGTCCAGGAAGTGA

Protein sequence

MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQPGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRTRQALKSRK

Homology

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BLAST of Sed0016574 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida])

HSP 1 Score: 265.0 bits (676), Expect = 3.9e-67
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MAAVPGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYK+SGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSSLL+KSLMKKEFRRMAKAV+NQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQALKS 147
           RLSAVNRSLKVAKSGVKKR RQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

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BLAST of Sed0016574 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 264.6 bits (675), Expect = 5.1e-67
Identity = 140/148 (94.59%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MAAVPGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYK+SGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSSLL+KSLMKKEFRRMAKAV+NQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQALKSRK 149
           RLSAVNRSLKVAKSGVKKR RQALKS+K
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of Sed0016574 vs. NCBI nr
Match: XP_022949503.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023523885.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7036445.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 139/147 (94.56%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MAAVPGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYK+SGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKPSSLL+KSLMKKEFRRMAKAV+NQVGDNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQALKSR 148
           RLSAVNRSLKVAKSGVKKR RQALKSR
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 147

[Close]

BLAST of Sed0016574 vs. NCBI nr
Match: KAG6606729.1 (hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 139/147 (94.56%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1    MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
            MAAVPGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYK+SGLANKKTVTIQ
Sbjct: 1464 MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 1523

Query: 61   PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
            PGGKDQSIL ATTKSKKQNKPSSLL+KSLMKKEFRRMAKAV+NQVGDNYYRPDLK+ ALA
Sbjct: 1524 PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 1583

Query: 121  RLSAVNRSLKVAKSGVKKRTRQALKSR 148
            RLSAVNRSLKVAKSGVKKR RQALKSR
Sbjct: 1584 RLSAVNRSLKVAKSGVKKRNRQALKSR 1610

[Close]

BLAST of Sed0016574 vs. NCBI nr
Match: XP_004146830.1 (60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein Csa_000918 [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 1.5e-66
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MAAVPGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYK+SGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS L+KSLMKKEFRRMAKAV+NQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQALKSRK 149
           RLSAVNRSLKVAKSGVKKR RQALKS+K
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of Sed0016574 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.7e-54
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MA VPGQL+WEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYK+SGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   +NKS++KKEF RM+K V+NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQA 144
           RLSA+++ L+VAKSG K+R RQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Sed0016574 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.1e-52
Identity = 105/143 (73.43%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYK+SGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   +NKS++KKEF RM+KAV+NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQA 144
           RLSA+++ L+VAKSG K+R RQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Sed0016574 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.7e-13
Identity = 49/127 (38.58%), Postives = 67/127 (52.76%), Query Frame = 0


Query: 8   LVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQPGGKDQS 67
           L W I++ NN+FLVK   +      FSKE NN+ NLNSY+Y+GL  KK V +      + 
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  ILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALARLSAVNR 127
             +   K+K  NKP+    +   K   RR    V   +  N+YR DL KA L R SA+ R
Sbjct: 65  FTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILR 124

Query: 128 SLKVAKS 135
           S +  K+
Sbjct: 125 SQRPIKA 128

[Close]

BLAST of Sed0016574 vs. ExPASy Swiss-Prot
Match: P41105 (60S ribosomal protein L28 OS=Mus musculus OX=10090 GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 47/141 (33.33%), Postives = 78/141 (55.32%), Query Frame = 0


Query: 8   LVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQPGGKDQS 67
           L W +V+  +SFL+K   +      +S E NNL   NS++Y+GL ++KTV ++P    + 
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALARLSAVNR 127
           +++   +   Q KP++   ++ + K  R    ++ + +  N YRPDL+ AA+ R SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLK--VAKSGVKKRTRQALKS 147
           S K  V K   +KRTR    S
Sbjct: 125 SQKPVVVK---RKRTRPTKSS 137

[Close]

BLAST of Sed0016574 vs. ExPASy Swiss-Prot
Match: Q3T0L7 (60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-11
Identity = 44/139 (31.65%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 8   LVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQPGGKDQS 67
           L W +V+  +SFL+K   +      +S E NNL   NS++Y+GL ++KTV ++P    + 
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALARLSAVNR 127
           +++   +   Q KP++   ++ + K  R    ++ + +  N YRPDL+ AA+ R SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 124

Query: 128 SLKVAKSGVKKRTRQALKS 147
           S K     VK++  +  KS
Sbjct: 125 SQKPVM--VKRKPSRPTKS 136

[Close]

BLAST of Sed0016574 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.4e-67
Identity = 140/148 (94.59%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MAAVPGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYK+SGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSSLL+KSLMKKEFRRMAKAV+NQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQALKSRK 149
           RLSAVNRSLKVAKSGVKKR RQALKS+K
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of Sed0016574 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.4e-67
Identity = 140/148 (94.59%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MAAVPGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYK+SGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSSLL+KSLMKKEFRRMAKAV+NQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQALKSRK 149
           RLSAVNRSLKVAKSGVKKR RQALKS+K
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of Sed0016574 vs. ExPASy TrEMBL
Match: A0A6J1K7P5 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 139/147 (94.56%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MAAVPGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYK+SGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKPSSLL+KSLMKKEFRRMAKAV+NQVGDNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQALKSR 148
           RLSAVNRSLKVAKSGVKKR RQALKSR
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 147

[Close]

BLAST of Sed0016574 vs. ExPASy TrEMBL
Match: A0A6J1GC99 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 139/147 (94.56%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MAAVPGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYK+SGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
           PGGKDQSIL ATTKSKKQNKPSSLL+KSLMKKEFRRMAKAV+NQVGDNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQALKSR 148
           RLSAVNRSLKVAKSGVKKR RQALKSR
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSR 147

[Close]

BLAST of Sed0016574 vs. ExPASy TrEMBL
Match: A0A0A0LIG3 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849920 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.1e-67
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MAAVPGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYK+SGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPSS L+KSLMKKEFRRMAKAV+NQV DNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQALKSRK 149
           RLSAVNRSLKVAKSGVKKR RQALKS+K
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSKK 148

[Close]

BLAST of Sed0016574 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 211.5 bits (537), Expect = 4.7e-55
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MA VPGQL+WEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYK+SGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   +NKS++KKEF RM+K V+NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQA 144
           RLSA+++ L+VAKSG K+R RQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Sed0016574 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 211.5 bits (537), Expect = 4.7e-55
Identity = 107/143 (74.83%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MA VPGQL+WEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYK+SGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   +NKS++KKEF RM+K V+NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQA 144
           RLSA+++ L+VAKSG K+R RQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Sed0016574 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 105/143 (73.43%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYK+SGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   +NKS++KKEF RM+KAV+NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQA 144
           RLSA+++ L+VAKSG K+R RQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Sed0016574 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 105/143 (73.43%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYK+SGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   +NKS++KKEF RM+KAV+NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQA 144
           RLSA+++ L+VAKSG K+R RQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Sed0016574 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 105/143 (73.43%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAAVPGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKYSGLANKKTVTIQ 60
           MA VPGQL+WEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYK+SGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPSSLLNKSLMKKEFRRMAKAVSNQVGDNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   +NKS++KKEF RM+KAV+NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRTRQA 144
           RLSA+++ L+VAKSG K+R RQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of Sed0016574 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886678.1	3.9e-67	95.89	60S ribosomal protein L28-2-like [Benincasa hispida]	[more]
XP_008447584.1	5.1e-67	94.59	PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDI...	[more]
XP_022949503.1	1.1e-66	94.56	60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S riboso...	[more]
KAG6606729.1	1.1e-66	94.56	hypothetical protein SDJN03_00071, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004146830.1	1.5e-66	93.92	60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein C...	[more]

BLAST of Sed0016574 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	6.7e-54	74.83	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	2.1e-52	73.43	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
Q962T2	9.7e-13	38.58	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
P41105	2.4e-11	33.33	60S ribosomal protein L28 OS=Mus musculus OX=10090 GN=Rpl28 PE=1 SV=2	[more]
Q3T0L7	4.1e-11	31.65	60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3	[more]

BLAST of Sed0016574 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BIE3	2.4e-67	94.59	60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV...	[more]
A0A5D3BXS0	2.4e-67	94.59	60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1K7P5	5.5e-67	94.56	60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=...	[more]
A0A6J1GC99	5.5e-67	94.56	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 P...	[more]
A0A0A0LIG3	7.1e-67	93.92	Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849...	[more]

BLAST of Sed0016574 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	4.7e-55	74.83	Ribosomal L28e protein family	[more]
AT4G29410.2	4.7e-55	74.83	Ribosomal L28e protein family	[more]
AT2G19730.1	1.5e-53	73.43	Ribosomal L28e protein family	[more]
AT2G19730.2	1.5e-53	73.43	Ribosomal L28e protein family	[more]
AT2G19730.3	1.5e-53	73.43	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.390.110		coord: 6..123 e-value: 1.9E-33 score: 117.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..134
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..109
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..109 e-value: 5.5E-28 score: 98.0
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016574.1	Sed0016574.1	mRNA
Sed0016574.2	Sed0016574.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome