Sed0016505 (gene) Chayote v1

Overview


Name	Sed0016505
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Dynein light chain
Location	LG11: 957275 .. 960582 (-)
RNA-Seq Expression	Sed0016505
Synteny	Sed0016505

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCCTAATCATTTTAAATTCCTCCCATTTTCTTTATATACCTAATGAACCAAACTATATTCTCTTCAACATCCTAATGTCTACTCTAAACAAGCAAATGAAAGGATTCAAATCCTTCTACAAGTCGCGCAATGTAGCATCTTGCGAGCTGCCTGATTCGTCGAGTTCGGTAGATAAAGCATCAATTTATAAGTATAATTGGTTGGGGAGGAAGTCTAAGAAAGCGATGGACGAGCACGGCGGGCGGAGAGGGACGACGTTGGGGAGCGATGGCGTGGCGGGAGGAATCGGGGGAAGACGGGTGGTGGTGGTTGAGGGTAGGAAGTCAGTTTCTCATGTGGAAACAAACTTGGAATCAGTGGCTAAATTTCTTCAAGTTAAGGTATTGGTAGCTGACATGCCTGAGATGATGCAGATTCATGCTTTTAGGTGTGCAAGGAGGAGTTATGACAGCTTGGAGAAGTTAAGCTCAAAACATGTGGCTTACAATATTAAAAAGGTATTGTTTTTCATTTGGCAAGTTTAATTTTGTGGATTTTCAGTGAGTTTATTCATTTATTTTGGTTGGATTCATTGAAGTAAAGAGAAGAGATTTTTGGAACAAATTATAAAATGGGGTTTTACAAAGTGAGAAACTTTGGTCAAATTCTTACCTTTTTTTGCAAGTATTGTTTTCTCTTTTCTTTTTTGGGCATTGGGAATTTTCATATTGATCTGTTTTTTTTTAGGAAATGGTCAAATGAGAGGCAGAGTAGAATTCCCCTTTAATTTTGTTTTCAAGATTTAAAACTTAGTTTTTCAAAGTACTTTTAAAATGTTGGTATGAAGCAAGAAAGCCAGGATAAGGTCTGTTTATAGCCTTAATTTTCAAATATAGAAATGAAAACTAAAAACAAATTAGTTATACAATATTACTTTAGTTTTTGTTTTTAAAATTTGAAAATTATACCAAAAACCAATACTTCTGATTATAATTTTTTTCCTTTTGTTTTGTTACCTATTTTCTAAAATGTTTTAAAAACACAAAAGCCAAAATTTGAAAACTTAAACATTTCTCTAAGAAGGTAGAAAACCATCGTAAGGTTTTTTTTATAGAGATTAAAATTCATAATCTCATAGTTACTAGGTTATACAGTATGTCACTAGAACTCTTGTTGGCCCATAAGTTTACGAATCATAAAACTAAAAATGAAATCGTAATTAAACGGATCGTACGTATCGAACTTTCCGGGGTCCATATAAATTCTTTAAACAAAGTCCATGACAGATTCACACCATTCCCATCTCTCTTTCTATGATCCATGTTTCTAATCAGAGAGACAGTTGTTCAAACACTAAATCTGTACATTTTATTATTATCTAAAAATTTTGAGACAAAATTCAACTGGTCATTTGGTCACGGATCCGACAACCCATGTGTTTAGATCAGTAATACATAGTGATTAGAACATATTTTAAGCTAACAATCTTACATTTCAATCAAATGGAGCAATTATTTTTCTTTAAATCCATGTGCTTTACTTGATTTCTTAGTGTTGTTGATTTTTCAATCATTTTCCAAGATTTTCACTTATTACTTAATTAGTTTGACTAAAATTAGTTATGAGATGCTCATTTTATGAGATGTCAAAAGAAGGAGTACTTCAGTGACATCATGTATCACATAGTAACTAGTTGCTTACGAGTTCGAGTCTCAATTATTGTTATTTTTTATATATAAAAAAATAGTTATGAGATGCTAACAAGAATAATGGCTCGATCAACACAAGTTTGTGTCTATGACTAAAAAGTTATAGATTTAAATTCTCCTAACATTAATTATTGTTGAGCTAAAAAATGGGTATAGAATTGATAGGGAGAGATAGAGGAAGTTTGTAGGATGGTAGATGAATTACAAGAAAGATTTGATTTAGAGAAGTGATGTCATTGTAAGATGTCTATTTGTTAAAAAATAAAAATAAATAAATTACAAGTTTATGTCTTTAAAAGTTGTGTTTAAATAGGGGTCGTTGAATTGTCAATTTTCTGTTCAATATTTCCTTGCCATGTTCAACATTTTTGTAAATTCACAAATCTTTTTTTATATACAAAATTGAAGTTAAAGGTCTATTAGACACGATTTAAATTTGCTATAGATTCGTTTATTTAAAAAGATAAGTGTGTTAGCGACTTATTAGTCATATAATTGAAATTTCAAAAACTTATTAGACATATAAATTTGAGAGACTTATTAGATACAAAATTGAAAATTTAGAAACTTATTTGACATAAATCTTAAAAGTTTAGGCCCTTCTGATAATCATTTTATTTTTAAAATTTAAGCCTACAACAATTACGTTACCATATATTTATTCTTACATGAATACCTATATCTTACCTATATATTTAGAAACAAAACCAAAATTTGGAAACAAAAAAAATTAATTTCCAAACTCTTATTTTTGTTTTTTAAATTTGGTTAGTATTAACATATTTTCTTAAGGAAAGATAGATTGTATGAAAGATGGAACACATGGTAGAAATTTTGGACAAGAATAAACTTAAATTTCAAAAACCAAAAACCAAATAGTTATCAAGGCCTAGTGACTAAATTTGTATTTAACCGTTGAAAATACTCATCTTGTTCCATATTAGAAAAGAGTGAGGAGACTTCAATTCTTTATAAGATATATGAACTATTCCCCTCATAACCCATTATTTTTTAGGTGGACGTATATATTCTATAATATAACATTAGAGTTTCATGTGAGTTGATCTAGCCCAAATACTTAAAACTTAAACTAGTATTCGATCCAAACATTCAAATCTAATCCAAGATGGTATTTCTAATATGGTACCATGAAGATACTCACCTTGTCCCAATTTGGAAAGGGAGGTGCATATTTATACTAGCTAATATTATTAACAAAATAAATAAGGGTTAATATATAATTTTATGTCACAAAAACCTGAGCTTCTACTCCATACTTGACTATTTTTTTTCTTCAAATAAATGAGTTTTGGACTAAAACTTTGAAATAAAGAAACAGTATTTAATACATTTTTCTTGATATACTCATTTTTTATTCTGATTAAATTGGGGCCTAATGCAGGAGTTTGATAAAGTGCATGGGCCAGCCTGGCATTGTATTGTTGGCTCAAGTTTTGGGTCATTTGTCACCCACTCAACAGGTTGCTTCCTTTATTTTTCAATGGAGAAACTTTACATTTTGTTGTTTAGAACAAAGATTCAAAAAGCTACAGAATGAGTTCATACAATGAACCTAATGTAAATGCATCTTATTAATACAAAAGCAATTTGTTCTTA

mRNA sequence

CTTCCCTAATCATTTTAAATTCCTCCCATTTTCTTTATATACCTAATGAACCAAACTATATTCTCTTCAACATCCTAATGTCTACTCTAAACAAGCAAATGAAAGGATTCAAATCCTTCTACAAGTCGCGCAATGTAGCATCTTGCGAGCTGCCTGATTCGTCGAGTTCGGTAGATAAAGCATCAATTTATAAGTATAATTGGTTGGGGAGGAAGTCTAAGAAAGCGATGGACGAGCACGGCGGGCGGAGAGGGACGACGTTGGGGAGCGATGGCGTGGCGGGAGGAATCGGGGGAAGACGGGTGGTGGTGGTTGAGGGTAGGAAGTCAGTTTCTCATGTGGAAACAAACTTGGAATCAGTGGCTAAATTTCTTCAAGTTAAGGTATTGGTAGCTGACATGCCTGAGATGATGCAGATTCATGCTTTTAGGTGTGCAAGGAGGAGTTATGACAGCTTGGAGAAGTTAAGCTCAAAACATGTGGCTTACAATATTAAAAAGGAGTTTGATAAAGTGCATGGGCCAGCCTGGCATTGTATTGTTGGCTCAAGTTTTGGGTCATTTGTCACCCACTCAACAGGTTGCTTCCTTTATTTTTCAATGGAGAAACTTTACATTTTGTTGTTTAGAACAAAGATTCAAAAAGCTACAGAATGAGTTCATACAATGAACCTAATGTAAATGCATCTTATTAATACAAAAGCAATTTGTTCTTA

Coding sequence (CDS)

ATGTCTACTCTAAACAAGCAAATGAAAGGATTCAAATCCTTCTACAAGTCGCGCAATGTAGCATCTTGCGAGCTGCCTGATTCGTCGAGTTCGGTAGATAAAGCATCAATTTATAAGTATAATTGGTTGGGGAGGAAGTCTAAGAAAGCGATGGACGAGCACGGCGGGCGGAGAGGGACGACGTTGGGGAGCGATGGCGTGGCGGGAGGAATCGGGGGAAGACGGGTGGTGGTGGTTGAGGGTAGGAAGTCAGTTTCTCATGTGGAAACAAACTTGGAATCAGTGGCTAAATTTCTTCAAGTTAAGGTATTGGTAGCTGACATGCCTGAGATGATGCAGATTCATGCTTTTAGGTGTGCAAGGAGGAGTTATGACAGCTTGGAGAAGTTAAGCTCAAAACATGTGGCTTACAATATTAAAAAGGAGTTTGATAAAGTGCATGGGCCAGCCTGGCATTGTATTGTTGGCTCAAGTTTTGGGTCATTTGTCACCCACTCAACAGGTTGCTTCCTTTATTTTTCAATGGAGAAACTTTACATTTTGTTGTTTAGAACAAAGATTCAAAAAGCTACAGAATGA

Protein sequence

MSTLNKQMKGFKSFYKSRNVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHGGRRGTTLGSDGVAGGIGGRRVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEMMQIHAFRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLYILLFRTKIQKATE

Homology

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BLAST of Sed0016505 vs. NCBI nr
Match: XP_023538230.1 (uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.1 bits (749), Expect = 1.7e-75
Identity = 156/195 (80.00%), Postives = 166/195 (85.13%), Query Frame = 0


Query: 1   MSTLNKQMK-GFKSFYKSRNVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHGGRRG 60
           M+TLNKQMK GFKSFYKSR+ A       S SVDK S+YKYNWLGRKSKK + +HGG RG
Sbjct: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60

Query: 61  TTLGSDGVAGGIGGR--RVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEMMQIHAF 120
              G DG  GG GG   R +VVEGRKSVSHVETNL SVA FLQVKVLV+DMPEMMQI AF
Sbjct: 61  AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120

Query: 121 RCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEK 180
           RCARRSYDSLEKLSSK +AYN+KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME+
Sbjct: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180

Query: 181 LYILLFRTKIQKATE 193
           LYILLFRTKIQKATE
Sbjct: 181 LYILLFRTKIQKATE 195

[Close]

BLAST of Sed0016505 vs. NCBI nr
Match: XP_022143180.1 (uncharacterized protein LOC111013113 [Momordica charantia])

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75
Identity = 150/194 (77.32%), Postives = 167/194 (86.08%), Query Frame = 0


Query: 1   MSTLNKQMKGFKSFYKSRNVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHGGRRGT 60
           M+TLNKQ+KGFKSFYKSR+ A        + +D+  +YKYNWLGRKSKKA D+HGGRRG 
Sbjct: 1   MATLNKQIKGFKSFYKSRDGARDTAAFDPAPLDRVPVYKYNWLGRKSKKATDQHGGRRGM 60

Query: 61  TLGSDGVAG--GIGGRRVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEMMQIHAFR 120
             G  G  G  G+GGR+++VVEGRKSVSHVETNL SVA FLQVKVLV+DMPEMMQ+ AFR
Sbjct: 61  EGGGGGGDGGEGMGGRKLLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQLQAFR 120

Query: 121 CARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180
            ARRSYDSLEK SSKH+A++IKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL
Sbjct: 121 SARRSYDSLEKFSSKHMAHSIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180

Query: 181 YILLFRTKIQKATE 193
           YILLFRTKIQKATE
Sbjct: 181 YILLFRTKIQKATE 194

[Close]

BLAST of Sed0016505 vs. NCBI nr
Match: KAG7021256.1 (hypothetical protein SDJN02_17944, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.4 bits (747), Expect = 2.9e-75
Identity = 157/197 (79.70%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 1   MSTLNKQMK-GFKSFYKSR----NVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHG 60
           M+TLNKQMK GFKSFYKSR    NV +CE    S SVDKAS+YKYNWLGRKSKK + +HG
Sbjct: 1   MATLNKQMKGGFKSFYKSRDGACNVQACE----SVSVDKASVYKYNWLGRKSKKVVHQHG 60

Query: 61  GRRGTTLGSDGVAGGIGGRRVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEMMQIH 120
           G RG   G DG   G    R +VVEGRKSVSHVETNL SVA FLQVKVLV+DMPEMMQI 
Sbjct: 61  GSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQ 120

Query: 121 AFRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 180
           AFRCARRSYDSLEKLSSK +AYN+KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM
Sbjct: 121 AFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 180

Query: 181 EKLYILLFRTKIQKATE 193
           E+LYILLFRTKIQKATE
Sbjct: 181 EELYILLFRTKIQKATE 193

[Close]

BLAST of Sed0016505 vs. NCBI nr
Match: XP_022938230.1 (uncharacterized protein LOC111444374 [Cucurbita moschata])

HSP 1 Score: 292.4 bits (747), Expect = 2.9e-75
Identity = 157/197 (79.70%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 1   MSTLNKQMK-GFKSFYKSR----NVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHG 60
           M+TLNKQMK GFKSFYKSR    NV +CE    S SVDKAS+YKYNWLGRKSKK + +HG
Sbjct: 10  MATLNKQMKGGFKSFYKSRDGACNVQACE----SVSVDKASVYKYNWLGRKSKKVVHQHG 69

Query: 61  GRRGTTLGSDGVAGGIGGRRVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEMMQIH 120
           G RG   G DG   G    R +VVEGRKSVSHVETNL SVA FLQVKVLV+DMPEMMQI 
Sbjct: 70  GSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQ 129

Query: 121 AFRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 180
           AFRCARRSYDSLEKLSSK +AYN+KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM
Sbjct: 130 AFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 189

Query: 181 EKLYILLFRTKIQKATE 193
           E+LYILLFRTKIQKATE
Sbjct: 190 EELYILLFRTKIQKATE 202

[Close]

BLAST of Sed0016505 vs. NCBI nr
Match: XP_031736570.1 (uncharacterized protein LOC101208065 [Cucumis sativus] >KAE8651528.1 hypothetical protein Csa_019270 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 6.5e-75
Identity = 160/199 (80.40%), Postives = 168/199 (84.42%), Query Frame = 0


Query: 1   MSTLNKQMKGFKSFYKS----RNVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHGG 60
           M+TLNKQMKGFKSFYKS    RNV+S E P S SSVDK SIYKYNWLGRKSKKA ++HGG
Sbjct: 1   MATLNKQMKGFKSFYKSRDGGRNVSSRE-PISMSSVDKTSIYKYNWLGRKSKKATEQHGG 60

Query: 61  RRGTTLGSDGVAG---GIGGRRVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEMMQ 120
             G   G  GV G    I G R VVVEGRKSVSHVETNL SVA FLQVKVLV+DMPE+MQ
Sbjct: 61  GGGGGGGGGGVGGIREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQ 120

Query: 121 IHAFRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYF 180
           I AFR ARRSYDSLEK SSKH+AYNIKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYF
Sbjct: 121 IQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYF 180

Query: 181 SMEKLYILLFRTKIQKATE 193
           SMEKLYILLFRTKIQKA E
Sbjct: 181 SMEKLYILLFRTKIQKAIE 198

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BLAST of Sed0016505 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-14
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 101 VKVLVADMPEMMQIHAFRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFG 160
           + V  ADMP+ MQ  A  C  ++++  E    + +A  IKKEFDK + P WHCIVG SFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 161 SFVTHSTGCFLYFSMEKLYILLFR 185
           SFVTH T  F+YF++ K  +LLF+
Sbjct: 68  SFVTHETKNFIYFNINKHSVLLFK 89

[Close]

BLAST of Sed0016505 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.9e-14
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 106 ADMPEMMQIHAFRCARRSYDSLEKLS-SKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVT 165
           ADMPE MQ  A  CA +   +LEK +  K +A  IKKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMPEDMQQDAVDCATQ---ALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 166 HSTGCFLYFSMEKLYILLFRT 186
           H T  F+YF + ++ +LLF++
Sbjct: 71  HETKHFIYFYLGQVAVLLFKS 88

[Close]

BLAST of Sed0016505 vs. ExPASy Swiss-Prot
Match: Q39580 (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.7e-14
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 106 ADMPEMMQIHAFRCARRSYDSLEKLS-SKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVT 165
           ADM E MQ  A  CA +   +LEK +  K +A  IKKEFD+ H P WHCIVG +FGS+VT
Sbjct: 13  ADMSEEMQADAVDCATQ---ALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVT 72

Query: 166 HSTGCFLYFSMEKLYILLFRT 186
           H T  F+YF + ++ ILLF++
Sbjct: 73  HETKHFIYFYLGQVAILLFKS 90

[Close]

BLAST of Sed0016505 vs. ExPASy Swiss-Prot
Match: P61285 (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-13
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 106 ADMPEMMQIHAFRCARRSYDSLEKLS-SKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVT 165
           ADM E MQ  +  CA +   +LEK +  K +A +IKKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 166 HSTGCFLYFSMEKLYILLFRT 186
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Sed0016505 vs. ExPASy Swiss-Prot
Match: P63167 (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-13
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 106 ADMPEMMQIHAFRCARRSYDSLEKLS-SKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVT 165
           ADM E MQ  +  CA +   +LEK +  K +A +IKKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 166 HSTGCFLYFSMEKLYILLFRT 186
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Sed0016505 vs. ExPASy TrEMBL
Match: A0A6J1CN34 (uncharacterized protein LOC111013113 OS=Momordica charantia OX=3673 GN=LOC111013113 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.1e-75
Identity = 150/194 (77.32%), Postives = 167/194 (86.08%), Query Frame = 0


Query: 1   MSTLNKQMKGFKSFYKSRNVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHGGRRGT 60
           M+TLNKQ+KGFKSFYKSR+ A        + +D+  +YKYNWLGRKSKKA D+HGGRRG 
Sbjct: 1   MATLNKQIKGFKSFYKSRDGARDTAAFDPAPLDRVPVYKYNWLGRKSKKATDQHGGRRGM 60

Query: 61  TLGSDGVAG--GIGGRRVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEMMQIHAFR 120
             G  G  G  G+GGR+++VVEGRKSVSHVETNL SVA FLQVKVLV+DMPEMMQ+ AFR
Sbjct: 61  EGGGGGGDGGEGMGGRKLLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQLQAFR 120

Query: 121 CARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180
            ARRSYDSLEK SSKH+A++IKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL
Sbjct: 121 SARRSYDSLEKFSSKHMAHSIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180

Query: 181 YILLFRTKIQKATE 193
           YILLFRTKIQKATE
Sbjct: 181 YILLFRTKIQKATE 194

[Close]

BLAST of Sed0016505 vs. ExPASy TrEMBL
Match: A0A6J1FJ58 (uncharacterized protein LOC111444374 OS=Cucurbita moschata OX=3662 GN=LOC111444374 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 157/197 (79.70%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 1   MSTLNKQMK-GFKSFYKSR----NVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHG 60
           M+TLNKQMK GFKSFYKSR    NV +CE    S SVDKAS+YKYNWLGRKSKK + +HG
Sbjct: 10  MATLNKQMKGGFKSFYKSRDGACNVQACE----SVSVDKASVYKYNWLGRKSKKVVHQHG 69

Query: 61  GRRGTTLGSDGVAGGIGGRRVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEMMQIH 120
           G RG   G DG   G    R +VVEGRKSVSHVETNL SVA FLQVKVLV+DMPEMMQI 
Sbjct: 70  GSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQ 129

Query: 121 AFRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 180
           AFRCARRSYDSLEKLSSK +AYN+KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM
Sbjct: 130 AFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 189

Query: 181 EKLYILLFRTKIQKATE 193
           E+LYILLFRTKIQKATE
Sbjct: 190 EELYILLFRTKIQKATE 202

[Close]

BLAST of Sed0016505 vs. ExPASy TrEMBL
Match: A0A1S3C671 (uncharacterized protein LOC103497357 OS=Cucumis melo OX=3656 GN=LOC103497357 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.6e-74
Identity = 160/201 (79.60%), Postives = 168/201 (83.58%), Query Frame = 0


Query: 1   MSTLNKQMKGFKSFYKS-----RNVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHG 60
           M+TLNKQMKGFKSFYKS     RNV+S E P S+SSVDK SIYKYNWLGRKSKKA D+H 
Sbjct: 1   MATLNKQMKGFKSFYKSRDGGGRNVSSRE-PVSTSSVDKTSIYKYNWLGRKSKKATDQHS 60

Query: 61  GRRGTTLGSDGVAGGIG----GRRVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEM 120
           G         G AGGIG    G R VVVEGRKSVSHVETNL SVA FLQVKVLV+DMPE+
Sbjct: 61  G--------GGGAGGIGEEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEI 120

Query: 121 MQIHAFRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFL 180
           MQI AFR ARRSYDSLEK SSKH+AYNIKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFL
Sbjct: 121 MQIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFL 180

Query: 181 YFSMEKLYILLFRTKIQKATE 193
           YFSMEKLYILLFRTKIQKA E
Sbjct: 181 YFSMEKLYILLFRTKIQKAIE 192

[Close]

BLAST of Sed0016505 vs. ExPASy TrEMBL
Match: A0A0A0LKY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.1e-74
Identity = 158/196 (80.61%), Postives = 167/196 (85.20%), Query Frame = 0


Query: 1   MSTLNKQMKGFKSFYKS----RNVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHGG 60
           M+TLNKQMKGFKSFYKS    RNV+S E P S SSVDK SIYKYNWLGRKSKKA ++HGG
Sbjct: 1   MATLNKQMKGFKSFYKSRDGGRNVSSRE-PISMSSVDKTSIYKYNWLGRKSKKATEQHGG 60

Query: 61  RRGTTLGSDGVAGGIGGRRVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEMMQIHA 120
             G   G  G+   I G R VVVEGRKSVSHVETNL SVA FLQVKVLV+DMPE+MQI A
Sbjct: 61  GGGGG-GVGGIREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQA 120

Query: 121 FRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 180
           FR ARRSYDSLEK SSKH+AYNIKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSME
Sbjct: 121 FRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSME 180

Query: 181 KLYILLFRTKIQKATE 193
           KLYILLFRTKIQKA E
Sbjct: 181 KLYILLFRTKIQKAIE 194

[Close]

BLAST of Sed0016505 vs. ExPASy TrEMBL
Match: A0A6J1HN27 (uncharacterized protein LOC111465683 OS=Cucurbita maxima OX=3661 GN=LOC111465683 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.5e-74
Identity = 155/197 (78.68%), Postives = 166/197 (84.26%), Query Frame = 0


Query: 1   MSTLNKQMK-GFKSFYKSR----NVASCELPDSSSSVDKASIYKYNWLGRKSKKAMDEHG 60
           M+T+NKQMK GFKSFYKSR    NV +CE    S SVDKA +YKYNWLGRKSKKA+ +HG
Sbjct: 1   MTTVNKQMKGGFKSFYKSRDGACNVQACE----SVSVDKAYVYKYNWLGRKSKKAVHQHG 60

Query: 61  GRRGTTLGSDGVAGGIGGRRVVVVEGRKSVSHVETNLESVAKFLQVKVLVADMPEMMQIH 120
           G RG   G  G  GG    R +VVEGRKSVSHVETNL SVA FLQVKVLV+DMPEMMQI 
Sbjct: 61  GPRGAKGGGGGDEGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQ 120

Query: 121 AFRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 180
           AFRCARRSYDSLEK SSK +AYN+KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM
Sbjct: 121 AFRCARRSYDSLEKFSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 180

Query: 181 EKLYILLFRTKIQKATE 193
           E+LYILLFRTKIQKATE
Sbjct: 181 EELYILLFRTKIQKATE 193

[Close]

BLAST of Sed0016505 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 171.4 bits (433), Expect = 7.0e-43
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 80  EGRKSVSHVE----TNLESVAKFLQVKVLVADMPEMMQIHAFRCARRSYDSLEKLSSKHV 139
           EGRKSVSHVE      +E+ A+ L V++L ADMP  MQ HAFRCAR + DSLEK SSKH+
Sbjct: 92  EGRKSVSHVERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHM 151

Query: 140 AYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLYILLFRTKIQKAT 192
           A+N+KKEFDK +GPAWHCIVGSSFGSFVTHSTGCF+YFSM+KLY+LLF+TK++ A+
Sbjct: 152 AFNLKKEFDKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRPAS 207

[Close]

BLAST of Sed0016505 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-20
Identity = 45/89 (50.56%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 101 VKVLVADMPEMMQIHAFRCARRSYDSLE-KLSSKHVAYNIKKEFDKVHGPAWHCIVGSSF 160
           V+V  +DMP   Q  AF  +R   ++   K  +K +A+ +KK+FD  +GPAWHCIVG+SF
Sbjct: 36  VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95

Query: 161 GSFVTHSTGCFLYFSMEKLYILLFRTKIQ 189
           GS+VTHSTG FLYF ++K+Y+LLF+T ++
Sbjct: 96  GSYVTHSTGGFLYFQIDKVYVLLFKTAVE 124

[Close]

BLAST of Sed0016505 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 78.2 bits (191), Expect = 8.1e-15
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 99  LQVKVLV--ADMPEMMQIHAFRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVG 158
           L+ K +V  +DMP  MQ+ A   A ++ D  +    K +A +IKKEFD+ +G  W C+VG
Sbjct: 2   LEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVG 61

Query: 159 SSFGSFVTHSTGCFLYFSMEKLYILLFR 185
           S+FG F THS G F+YF +E L  L+F+
Sbjct: 62  SNFGCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of Sed0016505 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 106 ADMPEMMQIHAFRCARRSYDSLEKLS-SKHVAYNIKKEFDKVHGPAWHCIVGSSFGSFVT 165
           ADM + MQ  A   A     + EK S  K +A NIKKEFDK HG  WHCIVG +FGS+VT
Sbjct: 45  ADMKDDMQKEAIEIA---ISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVT 104

Query: 166 HSTGCFLYFSMEKLYILLFRT 186
           H T  F+YF +++  +LLF++
Sbjct: 105 HETNHFVYFYLDQKAVLLFKS 122

[Close]

BLAST of Sed0016505 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-14
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 100 QVKVLVADMPEMMQIHAFRCARRSYDSLEKLSSKHVAYNIKKEFDKVHGPAWHCIVGSSF 159
           + KV   DMP  MQ+ A + A +S D  +   S  +A +IKKEFD+ +G  W C+VG++F
Sbjct: 5   KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64

Query: 160 GSFVTHSTGCFLYFSMEKLYILLFR 185
           G F THS G F+YF +  L  L+F+
Sbjct: 65  GCFFTHSKGTFIYFHLGTLNFLIFK 89

The following BLAST results are available for this feature:

BLAST of Sed0016505 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538230.1	1.7e-75	80.00	uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo]	[more]
XP_022143180.1	2.2e-75	77.32	uncharacterized protein LOC111013113 [Momordica charantia]	[more]
KAG7021256.1	2.9e-75	79.70	hypothetical protein SDJN02_17944, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022938230.1	2.9e-75	79.70	uncharacterized protein LOC111444374 [Cucurbita moschata]	[more]
XP_031736570.1	6.5e-75	80.40	uncharacterized protein LOC101208065 [Cucumis sativus] >KAE8651528.1 hypothetica...	[more]

BLAST of Sed0016505 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86A88	1.0e-14	48.81	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
O02414	3.9e-14	51.85	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q39580	6.7e-14	51.85	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=30...	[more]
P61285	1.5e-13	50.62	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
P63167	1.5e-13	50.62	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]

BLAST of Sed0016505 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN34	1.1e-75	77.32	uncharacterized protein LOC111013113 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1FJ58	1.4e-75	79.70	uncharacterized protein LOC111444374 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A1S3C671	1.6e-74	79.60	uncharacterized protein LOC103497357 OS=Cucumis melo OX=3656 GN=LOC103497357 PE=...	[more]
A0A0A0LKY0	2.1e-74	80.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1	[more]
A0A6J1HN27	3.5e-74	78.68	uncharacterized protein LOC111465683 OS=Cucurbita maxima OX=3661 GN=LOC111465683...	[more]

BLAST of Sed0016505 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	7.0e-43	69.83	Dynein light chain type 1 family protein	[more]
AT1G23220.1	2.9e-20	50.56	Dynein light chain type 1 family protein	[more]
AT1G52240.2	8.1e-15	44.32	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G15930.1	1.1e-14	50.62	Dynein light chain type 1 family protein	[more]
AT3G16120.1	1.8e-14	43.53	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 96..185 e-value: 2.9E-38 score: 143.1
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 101..185 e-value: 6.2E-31 score: 106.6
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 74..191
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 99..185 e-value: 7.4E-32 score: 111.4
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 99..185
None	No IPR available	PANTHER	PTHR11886:SF37	DYNEIN LIGHT CHAIN-LIKE PROTEIN	coord: 74..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016505.1	Sed0016505.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding