Sed0016416 (gene) Chayote v1

Overview


Name	Sed0016416
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein LOL2
Location	LG01: 15736527 .. 15740040 (-)
RNA-Seq Expression	Sed0016416
Synteny	Sed0016416

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCGACAACAGTTCTCCGTAACAGCGCGGGAGGTTTCTATGGTGAATTCTGCGAGAACGACAAATGGAGAGATTGGAGGTCCAAGAAATCGACAAAGACGAAGATGACGGACCCCCTCCTGGATGGGAGCCCATCGCTCCGCCGCAACCGACTCCACCGCCGCCGCTATCGACTCCACCACCGCCGCCGCCGCCGCCGCCACTTTCTTGTGAGAACTTCCGACTTCTATTTCAAATTCTTGCGATGATTCTACTTCGTGTTAAACTCAAGTCCGATAATACTTCTTAGAATCTACTGCCTATTACTTGGATATTTGCTGCGGTACCTTGTTCAACTTGATGTTAATTCCACAAGTGTGGATAGAATTTAGAACAATGTTAATTTGTTATTAGCTTGTTTAATTAGTCCCCAGTATCGCCATTGGACGTGTTCAAATTATTCTCCATCGCACACACAAGTGCCATAGGATTCATAAGTTGGATTTATAATTTCCCGAGTGCTATATGATTTCTTTATTTATTGTGTTTTCTTTTGTAAATTAGCTCTAAAAATGATCATTTCCTCTGAAACACTTTCGTTTAATGAATGAAGATGTTTTCGTTTCGTCTTGTTGATCTGCAGCTGAGATGGCACAAATGGTCTGTGGTTCGTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGGTTTTGTGTCTTTTCTTTCTTTCCTTTTTAGTTTTGACTATTCTTTTCTTCCTTAAAAGTTAAAACTTTCCTAGTTCATTTGCTGTTAGCTTTTTGCTAATTTTAAGAAGATCCCACTTATATTGGTTTCAAGCTTTATGCTCTCCAAATCAGTTTTCTTCCTCCTTCATTAGAGGGGTCAAGTGTTCAGCACTATTTTGAATAAGAAATCCAAATGTTGTAGAGTTAGGTGGGATGTCTTGTAATAATAGTCGAGGTGCACTTAAAGTGTCTTGAACAATCACATTCACGGATGGAAAAAAAAACTGTTTCTTGTGGGTAGTGCTCTGGTGGTGCCCGTATATCACTTTCATTTGAACTTTATGTAACAATCGAGGGAATGGGTCAAGTGATATATGGTTTACATTATGTGATTGCGCCTTTAAAACCAAATATTGTAGGAACTATGATCTTTCTCAAATGTGTTATAGATAAATTTAGGTGGTTTTCCATAGTTTTCCTCTATTCTGGCATTCAAGATATCTACACCCTTGTTTTCAGGGCCACCAAGTAAAATTGTTGAGTTCTATCCTCTTAGCCTTGAGATGAGCTAACACTAGACAAGTTTATAAATTCAAAAGGGTTTCGGCTGTGTGCGTGTACTTGTTCAAGTTCGATTGAATTTTGAAGAATTGAGTAGATGGGACTAGAATAGAGTCTGATTCTACATGGCAGCTCTAATTTCCTGGAATTGGCAGCTCTAATTCAGTAATTGTGTATAGTCTGATATTCAAATGATCGTTACTTTTTCTTTTCCTTTCTTTTGTCAATACATGCTCGTAATTGAAACTTGTAGGAAAAATTTTCCCTTCCAGAAGGGTTTCTTCTGTGTGCGTGTACTTGTTCAAGTTCGATTGAATTTTGAAGAATTGAGTAGATGGGACTAGAATAGAGTCTGATTCTACATGGCAGCTCTAATTTCCTGGAATTGGCAGCTCTAATTCAGTAATTGTGTATAGTCTGATATTCAAATGATCGTTACTTTTTCTTTTCCTTTCTTTTGTCAATACATGCTCGTAATTGAAACTTGTAGGAAAAATTTTCCCTTCCAGAAGGGTTTCTTCTGTGTGCGTGTACTTGTTCAAGTTCGATTGAATTTTGAAGAATTGAGTAGATGGGACTAGAATAGAGTCTGATTCTACATGGCAGCTCTAATTTCCTGGAATTGGGATCGGGGGATGCCATGATCATTTAAGGAAACTATTGCAAAAATGAAATTTTAGAAGAAAAATACTTTAGCCTAATTTTTTTGGCACTTCAAGTCTATCTTGATCTTAAAGTCCATGCCTGTCCGAAGCCCCAAAATATGGAAGAAGTCAAGTTTATCTATTTTGATTTATTTCATATGTTCATGATTCAAAATTCAATATTTAACTTAATAGACTCAGCCTTTCTAATGACTCGCTGTGAAACTCTTGCAATACTTTTTCTTTTGTTGTATTGACACCTCTGTATTCTCTTTCCAGCTCACGAGGTTGGACAAGTTAAGTGTGGTTCTTGTGCAGTGTTGCTTATGTACCAATATGGAGCATCATCCGTTAGGTGTTCCTCGTGTACTAGTGTGACTGAAATTGGGGTATGTGAAGCCACTTTCAGGCTAAGTAATTGCTTGGAAATATGCTTTTAAATATGTACACTACTGTCTTTATCTTTCTGGTTGACATTCATTCATAATTCTGAAAAATGTTTAACTAGAAACTTGATGATCTCTCTTTAATCATTTGGTGAGAAATTTGTGGCCCACATGCGTAAAACATGAATCGGGTGAGACTAATCTTCCCTTTCACTCCACATGTTGACCACTGTATAACTACTGCAATTTCCATTGCCAAGGAGCATGGAGCAGGGCCTATGTCTATGGTCTTCTTGATCAATGGAATTATATCGTAAAGTGCGGTACGGATAATAAATTCATGCCCATTGACAGATTTTAAAAATTTCTTTTGCGCATTCACACACATTATACTCACATACATTATGTGGAAATGAGGGTGTTTGTTATGATATTTTGTACAGTTTCTTTGCTTTGATGCTTGATTGTTTTATTTACTGTATGGATGAGAATCCCCTCCGGTCGGGGACATTCGATAAAATTGTGTGAATGAGACAGCTGACCACAAATTTTTTTCTCTAACGGCTTGAAGTGGATGTGCAGGTGCATAACAGACGCCCACCGTGGTCGATTCAGCAGGGACAAGCAACCCCTCCTACCAATGTTCAGCAGAGCCTGATTTAGGAACAAACTGGCGTTTTTAATTTTAAATTTTTTTTCCCTTTGCAGCCTTAACATTATCTATGGCTTGTGACTTGATTTCCTACTTTTTATCACTTTTCTCTGCTGCTGATTTGTTGTTCATTGTAAGTGAATATTCTTATTTAAAGTAGCAGCACGATGTAAACATCGAAGAAATTGATCAAAAAAGCATGACATCCCCAAGGAGTTGCATAGTGGTTGAAAACTTGGATTTTGAGGGTATACTTGCCTTAATGTACCAGGTTCGAGACTCAACTGTGACATTATTCCTTTGATGTCTCCAGGTGCCTAACCTAGAGATGGACATGGTTATGGTTACCCTTGTTTAAAAAAAACAGCTGTCTATGACATGAACTAAACTTGATATCAATTCTTGGACTTTGGCCGTTTTTAGCTGCAGGATTTGGTGTTTTATGAACCGGATCTTGTGGACATGTGTACTTGAGAGACGATTCAGATTTGCACTTAAATAAAATTGTTTTATGGAA

mRNA sequence

GTGCGACAACAGTTCTCCGTAACAGCGCGGGAGGTTTCTATGGTGAATTCTGCGAGAACGACAAATGGAGAGATTGGAGGTCCAAGAAATCGACAAAGACGAAGATGACGGACCCCCTCCTGGATGGGAGCCCATCGCTCCGCCGCAACCGACTCCACCGCCGCCGCTATCGACTCCACCACCGCCGCCGCCGCCGCCGCCACTTTCTTCTGAGATGGCACAAATGGTCTGTGGTTCGTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGCTCACGAGGTTGGACAAGTTAAGTGTGGTTCTTGTGCAGTGTTGCTTATGTACCAATATGGAGCATCATCCGTTAGGTGTTCCTCGTGTACTAGTGTGACTGAAATTGGGGTGCATAACAGACGCCCACCGTGGTCGATTCAGCAGGGACAAGCAACCCCTCCTACCAATGTTCAGCAGAGCCTGATTTAGGAACAAACTGGCGTTTTTAATTTTAAATTTTTTTTCCCTTTGCAGCCTTAACATTATCTATGGCTTGTGACTTGATTTCCTACTTTTTATCACTTTTCTCTGCTGCTGATTTGTTGTTCATTGTAAGTGAATATTCTTATTTAAAGTAGCAGCACGATGTAAACATCGAAGAAATTGATCAAAAAAGCATGACATCCCCAAGGAGTTGCATAGTGGTTGAAAACTTGGATTTTGAGGGTATACTTGCCTTAATGTACCAGGTTCGAGACTCAACTGTGACATTATTCCTTTGATGTCTCCAGGTGCCTAACCTAGAGATGGACATGGTTATGGTTACCCTTGTTTAAAAAAAACAGCTGTCTATGACATGAACTAAACTTGATATCAATTCTTGGACTTTGGCCGTTTTTAGCTGCAGGATTTGGTGTTTTATGAACCGGATCTTGTGGACATGTGTACTTGAGAGACGATTCAGATTTGCACTTAAATAAAATTGTTTTATGGAA

Coding sequence (CDS)

ATGGAGAGATTGGAGGTCCAAGAAATCGACAAAGACGAAGATGACGGACCCCCTCCTGGATGGGAGCCCATCGCTCCGCCGCAACCGACTCCACCGCCGCCGCTATCGACTCCACCACCGCCGCCGCCGCCGCCGCCACTTTCTTCTGAGATGGCACAAATGGTCTGTGGTTCGTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGCTCACGAGGTTGGACAAGTTAAGTGTGGTTCTTGTGCAGTGTTGCTTATGTACCAATATGGAGCATCATCCGTTAGGTGTTCCTCGTGTACTAGTGTGACTGAAATTGGGGTGCATAACAGACGCCCACCGTGGTCGATTCAGCAGGGACAAGCAACCCCTCCTACCAATGTTCAGCAGAGCCTGATTTAG

Protein sequence

MERLEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWSIQQGQATPPTNVQQSLI

Homology

[Close]

BLAST of Sed0016416 vs. NCBI nr
Match: XP_022140183.1 (protein LOL2 [Momordica charantia])

HSP 1 Score: 238.4 bits (607), Expect = 3.9e-59
Identity = 119/142 (83.80%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 4   LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLL 63
           +E QEID DEDDGPPPGWEPI P           PPPPPPPPPLSS+MAQMVCGSCRRLL
Sbjct: 1   MEFQEIDNDEDDGPPPGWEPITP-----------PPPPPPPPPLSSDMAQMVCGSCRRLL 60

Query: 64  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGV 123
           KYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMY YGASSVRCSSCT+VTEIGV
Sbjct: 61  KYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGV 120

Query: 124 HNRRPPWSIQQGQATPPTNVQQ 146
           HNRRPPWS+QQGQATPPTNV Q
Sbjct: 121 HNRRPPWSVQQGQATPPTNVVQ 131

[Close]

BLAST of Sed0016416 vs. NCBI nr
Match: XP_022927005.1 (protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo subsp. pepo] >KAG6583998.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019620.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-56
Identity = 115/142 (80.99%), Postives = 121/142 (85.21%), Query Frame = 0


Query: 4   LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLL 63
           +E+ EI+KDEDDGPPPGWEPI PP            P PPP PLSS+MAQMVCG+CRRLL
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPL-----------PQPPPQPLSSDMAQMVCGTCRRLL 60

Query: 64  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGV 123
           KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY YGASSVRCSSCT VTEIGV
Sbjct: 61  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGV 120

Query: 124 HNRRPPWSIQQGQATPPTNVQQ 146
           HNRRPPWS+QQGQA PPTN  Q
Sbjct: 121 HNRRPPWSVQQGQAAPPTNSVQ 131

[Close]

BLAST of Sed0016416 vs. NCBI nr
Match: XP_038893782.1 (protein LOL2 isoform X1 [Benincasa hispida])

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-56
Identity = 116/142 (81.69%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 4   LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLL 63
           ++V EI+KD+DDGPPPGWEPI  P P        PPPPPPPPPLSS+MAQMVCG+CRRLL
Sbjct: 1   MDVLEIEKDDDDGPPPGWEPITSPLP--------PPPPPPPPPLSSDMAQMVCGTCRRLL 60

Query: 64  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGV 123
           KYLKGA YVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMY YGASSVRCSSCTSVTEIGV
Sbjct: 61  KYLKGAIYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGV 120

Query: 124 HNRRPPWSIQQGQATPPTNVQQ 146
           HNRRPPWS+QQGQA  PTN  Q
Sbjct: 121 HNRRPPWSVQQGQAALPTNFVQ 134

[Close]

BLAST of Sed0016416 vs. NCBI nr
Match: XP_023001758.1 (protein LOL2 [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 114/142 (80.28%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 4   LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLL 63
           +E+ EI+KDEDDGPPPGWEPI PP            P  PP PLSS+MAQMVCG+CRRLL
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPL-----------PQQPPQPLSSDMAQMVCGTCRRLL 60

Query: 64  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGV 123
           KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY YGASSVRCSSCT VTEIGV
Sbjct: 61  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGV 120

Query: 124 HNRRPPWSIQQGQATPPTNVQQ 146
           HNRRPPWS+QQGQA PPTN  Q
Sbjct: 121 HNRRPPWSVQQGQAAPPTNSVQ 131

[Close]

BLAST of Sed0016416 vs. NCBI nr
Match: XP_004146601.1 (protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_013266 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-55
Identity = 113/142 (79.58%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 4   LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLL 63
           ++V EI+KDEDDGPPPGWEPI P  P            PPPP LSS+MAQMVCG+CRRLL
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPL-----------PPPPQLSSDMAQMVCGTCRRLL 60

Query: 64  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGV 123
           KYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMY YGASSVRCSSCTSVTEIGV
Sbjct: 61  KYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGV 120

Query: 124 HNRRPPWSIQQGQATPPTNVQQ 146
           HNRRPPWS+ QGQA PPTN  Q
Sbjct: 121 HNRRPPWSVHQGQAAPPTNFVQ 131

[Close]

BLAST of Sed0016416 vs. ExPASy Swiss-Prot
Match: O65426 (Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-30
Identity = 75/137 (54.74%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 2   ERLEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEM---AQMVCGS 61
           E  + +E +++E++GPPPGWE         PPP+ T      P P + E+   AQMVCGS
Sbjct: 11  EEQKHREEEEEEEEGPPPGWE-----SAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGS 70

Query: 62  CRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSV 121
           CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMY YGA +VRCSSC SV
Sbjct: 71  CRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSV 130

Query: 122 TEIGVHNRRPPWSIQQG 136
           T+I  +N+RPPWS QQG
Sbjct: 131 TDISENNKRPPWSEQQG 142

[Close]

BLAST of Sed0016416 vs. ExPASy Swiss-Prot
Match: Q704V3 (Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-23
Identity = 68/134 (50.75%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 14  DDGPPPGWEPIAPPQPTPPPPLSTP-PPPPPPPPLSSEMAQMVCGSCRRLLKYLKGARYV 73
           D+   P   P +    +P    S P  PPPP P L+ E+ QMVCGSCR LL Y +GA YV
Sbjct: 30  DESLQPQHPPSSTAHDSPCLQDSVPLVPPPPSPYLNKEVGQMVCGSCRILLAYFRGAGYV 89

Query: 74  QCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWSI 133
            C+CC T+NYVLEAHEVG+V CG CA LLMY +GA +V+CS C  VTEIG  N R   SI
Sbjct: 90  HCTCCQTMNYVLEAHEVGKVHCGHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSI 149

Query: 134 QQGQATPPTNVQQS 147
           +Q   T  + + ++
Sbjct: 150 EQPTRTNSSGLAEA 163

[Close]

BLAST of Sed0016416 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.1e-22
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 45  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQ 104
           PP  +EMAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMYQ
Sbjct: 65  PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQ 124

Query: 105 YGASSVRCSSCTSVTEIG 123
           YGA SV+C+ C  VT +G
Sbjct: 125 YGARSVKCAVCNFVTSVG 142

[Close]

BLAST of Sed0016416 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.4e-21
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 45  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQ 104
           P   +EMAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMYQ
Sbjct: 96  PAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQ 155

Query: 105 YGASSVRCSSCTSVTEIG 123
           YGA SV+C+ C  VT +G
Sbjct: 156 YGARSVKCAVCNFVTSVG 173

[Close]

BLAST of Sed0016416 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-17
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 41  PPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQ 100
           PPPPPP   +MA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q
Sbjct: 40  PPPPPP--HDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQ 99

Query: 101 VKCGSCAVLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWSIQQ--GQATPPT 142
           + CG C   LMY YGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 100 INCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

[Close]

BLAST of Sed0016416 vs. ExPASy TrEMBL
Match: A0A6J1CHF4 (protein LOL2 OS=Momordica charantia OX=3673 GN=LOC111010913 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.9e-59
Identity = 119/142 (83.80%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 4   LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLL 63
           +E QEID DEDDGPPPGWEPI P           PPPPPPPPPLSS+MAQMVCGSCRRLL
Sbjct: 1   MEFQEIDNDEDDGPPPGWEPITP-----------PPPPPPPPPLSSDMAQMVCGSCRRLL 60

Query: 64  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGV 123
           KYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMY YGASSVRCSSCT+VTEIGV
Sbjct: 61  KYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGV 120

Query: 124 HNRRPPWSIQQGQATPPTNVQQ 146
           HNRRPPWS+QQGQATPPTNV Q
Sbjct: 121 HNRRPPWSVQQGQATPPTNVVQ 131

[Close]

BLAST of Sed0016416 vs. ExPASy TrEMBL
Match: A0A6J1EMN3 (protein LOL2 OS=Cucurbita moschata OX=3662 GN=LOC111433966 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.7e-57
Identity = 115/142 (80.99%), Postives = 121/142 (85.21%), Query Frame = 0


Query: 4   LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLL 63
           +E+ EI+KDEDDGPPPGWEPI PP            P PPP PLSS+MAQMVCG+CRRLL
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPL-----------PQPPPQPLSSDMAQMVCGTCRRLL 60

Query: 64  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGV 123
           KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY YGASSVRCSSCT VTEIGV
Sbjct: 61  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGV 120

Query: 124 HNRRPPWSIQQGQATPPTNVQQ 146
           HNRRPPWS+QQGQA PPTN  Q
Sbjct: 121 HNRRPPWSVQQGQAAPPTNSVQ 131

[Close]

BLAST of Sed0016416 vs. ExPASy TrEMBL
Match: A0A6J1KRG9 (protein LOL2 OS=Cucurbita maxima OX=3661 GN=LOC111495801 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.7e-56
Identity = 114/142 (80.28%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 4   LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLL 63
           +E+ EI+KDEDDGPPPGWEPI PP            P  PP PLSS+MAQMVCG+CRRLL
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPL-----------PQQPPQPLSSDMAQMVCGTCRRLL 60

Query: 64  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGV 123
           KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY YGASSVRCSSCT VTEIGV
Sbjct: 61  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGV 120

Query: 124 HNRRPPWSIQQGQATPPTNVQQ 146
           HNRRPPWS+QQGQA PPTN  Q
Sbjct: 121 HNRRPPWSVQQGQAAPPTNSVQ 131

[Close]

BLAST of Sed0016416 vs. ExPASy TrEMBL
Match: A0A0A0LXE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.3e-55
Identity = 113/142 (79.58%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 4   LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLL 63
           ++V EI+KDEDDGPPPGWEPI P  P            PPPP LSS+MAQMVCG+CRRLL
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPL-----------PPPPQLSSDMAQMVCGTCRRLL 60

Query: 64  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGV 123
           KYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMY YGASSVRCSSCTSVTEIGV
Sbjct: 61  KYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGV 120

Query: 124 HNRRPPWSIQQGQATPPTNVQQ 146
           HNRRPPWS+ QGQA PPTN  Q
Sbjct: 121 HNRRPPWSVHQGQAAPPTNFVQ 131

[Close]

BLAST of Sed0016416 vs. ExPASy TrEMBL
Match: A0A5A7UQS3 (Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001680 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 111/142 (78.17%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 4   LEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEMAQMVCGSCRRLL 63
           ++V EI+KDEDDGPPPGWEPI P  P            PP P LS +MAQMVCG+CRRLL
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPL-----------PPQPQLSPDMAQMVCGTCRRLL 60

Query: 64  KYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSVTEIGV 123
           KYLKGARYVQCS CSTVN+VLEAHEVGQVKCGSCAVLLMY YGASSVRCSSCTSVTEIGV
Sbjct: 61  KYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGV 120

Query: 124 HNRRPPWSIQQGQATPPTNVQQ 146
           HNRRPPWS+QQGQA PPTN  Q
Sbjct: 121 HNRRPPWSVQQGQAAPPTNFVQ 131

[Close]

BLAST of Sed0016416 vs. TAIR 10
Match: AT4G21610.1 (lsd one like 2 )

HSP 1 Score: 134.0 bits (336), Expect = 9.6e-32
Identity = 75/137 (54.74%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 2   ERLEVQEIDKDEDDGPPPGWEPIAPPQPTPPPPLSTPPPPPPPPPLSSEM---AQMVCGS 61
           E  + +E +++E++GPPPGWE         PPP+ T      P P + E+   AQMVCGS
Sbjct: 11  EEQKHREEEEEEEEGPPPGWE-----SAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGS 70

Query: 62  CRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQYGASSVRCSSCTSV 121
           CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMY YGA +VRCSSC SV
Sbjct: 71  CRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSV 130

Query: 122 TEIGVHNRRPPWSIQQG 136
           T+I  +N+RPPWS QQG
Sbjct: 131 TDISENNKRPPWSEQQG 142

[Close]

BLAST of Sed0016416 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-23
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 45  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQ 104
           PP  +EMAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMYQ
Sbjct: 65  PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQ 124

Query: 105 YGASSVRCSSCTSVTEIG 123
           YGA SV+C+ C  VT +G
Sbjct: 125 YGARSVKCAVCNFVTSVG 142

[Close]

BLAST of Sed0016416 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-23
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 45  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQ 104
           PP  +EMAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMYQ
Sbjct: 98  PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQ 157

Query: 105 YGASSVRCSSCTSVTEIG 123
           YGA SV+C+ C  VT +G
Sbjct: 158 YGARSVKCAVCNFVTSVG 175

[Close]

BLAST of Sed0016416 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-23
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 45  PPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYQ 104
           PP  +EMAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMYQ
Sbjct: 65  PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQ 124

Query: 105 YGASSVRCSSCTSVTEIG 123
           YGA SV+C+ C  VT +G
Sbjct: 125 YGARSVKCAVCNFVTSVG 142

[Close]

BLAST of Sed0016416 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 90.9 bits (224), Expect = 9.3e-19
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 41  PPPPPPLSSEMAQMVCGSCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQ 100
           PPPPPP   +MA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q
Sbjct: 40  PPPPPP--HDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQ 99

Query: 101 VKCGSCAVLLMYQYGASSVRCSSCTSVTEIGVHNRRPPWSIQQ--GQATPPT 142
           + CG C   LMY YGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 100 INCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

The following BLAST results are available for this feature:

BLAST of Sed0016416 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140183.1	3.9e-59	83.80	protein LOL2 [Momordica charantia]	[more]
XP_022927005.1	1.4e-56	80.99	protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo s...	[more]
XP_038893782.1	2.4e-56	81.69	protein LOL2 isoform X1 [Benincasa hispida]	[more]
XP_023001758.1	1.2e-55	80.28	protein LOL2 [Cucurbita maxima]	[more]
XP_004146601.1	2.6e-55	79.58	protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_0...	[more]

BLAST of Sed0016416 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65426	1.4e-30	54.74	Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1	[more]
Q704V3	6.1e-23	50.75	Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1	[more]
Q93ZB1	5.1e-22	60.26	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	7.4e-21	57.69	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
P94077	1.3e-17	43.75	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of Sed0016416 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHF4	1.9e-59	83.80	protein LOL2 OS=Momordica charantia OX=3673 GN=LOC111010913 PE=4 SV=1	[more]
A0A6J1EMN3	6.7e-57	80.99	protein LOL2 OS=Cucurbita moschata OX=3662 GN=LOC111433966 PE=4 SV=1	[more]
A0A6J1KRG9	5.7e-56	80.28	protein LOL2 OS=Cucurbita maxima OX=3661 GN=LOC111495801 PE=4 SV=1	[more]
A0A0A0LXE3	1.3e-55	79.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1	[more]
A0A5A7UQS3	2.0e-53	78.17	Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0016416 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21610.1	9.6e-32	54.74	lsd one like 2	[more]
AT1G32540.2	3.7e-23	60.26	lsd one like 1	[more]
AT1G32540.1	3.7e-23	60.26	lsd one like 1	[more]
AT1G32540.3	3.7e-23	60.26	lsd one like 1	[more]
AT4G20380.2	9.3e-19	43.75	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 91..120 e-value: 7.1E-11 score: 39.5 coord: 53..83 e-value: 5.0E-14 score: 49.6
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 94..118 e-value: 1.2E-9 score: 37.9 coord: 56..80 e-value: 1.1E-7 score: 31.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..148
None	No IPR available	PANTHER	PTHR31747:SF17	PROTEIN LOL2	coord: 7..141
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 7..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016416.1	Sed0016416.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005634	nucleus