Sed0016413 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCTCCTAAATTGAAATCTCCAAGCACCTCAAAAAAGTAAATCTATAATGGAGTGGGAATCTGACTATAGTCTTTTACGTGAGAATACAATAACCAAGCAAAAAAAAGCATGACAAAAAGAAACAAAAAGGACGGATAAAAGATGATGGTATGGAGGAGTATATATTCACTTGGATTAGCTACACATCTTCATGGAGTGAAAGAGCTATAAAATCCAGAACACTGAAAACCAACAATTTAAGATCTAAAAGATTAAAGAAGAAACTTATAAAAAAATGAGCAGACGTTCTACTAATTTTCCTCCAGGGATTTGGCAGACTAGAAGGCAATATGATCGCCAGAGGTATAACAGAAATGATTCAAACCATATGAACTCCACACCGCCACACCCTCGTCAATTTCAGGTAAGCAGGTTAACAATTCTTTTTTTTTTTTTGCAATGAACCAACTGTATTCTTTTTTTATAATCGGGAATCGAGTTTCACTACTCGGTGCACCCGTGCGTGTCCATTCCAAGGTCCGGACACAAGAGACAACAAAGAATTTTACAATTAAGCTCACTAGTGGGTTTGGATCTCCACGTAGAGGTTGTACCTTGGAGACCAATGAACTGTATTCAAACATGTCATCAAAGCTTAAGCTATTACCCTACAACATGATTTGCTGGTGGCAAGGCAGAACTCTCATTTCACATTTAAATTCTATGTTAATAGTTCTAGTTTTCTCAAAAATGTATTAGTGGTCGGGAAGTTAAAAAAAAATGGTAGCAATAGTATACCTTATTATTCATGTGTTGACAGAATTCTCATAGAGAGATAGATCAAGTTCCATGGAGGCCCACTGGAGAGATAGATGCAATTCCGTGGCAGCCTGCGGGTGAGACAATGATTACAAGAATATGGGACATTGGCGGGTAAATAACTCAAAACCTTAGTAGTTTTTAGGCGCTGTTTAGTGTTATGAACTGAATTATATGCAAACCAAAGAAATTGATATTGCAGATTCATTTCATAAAAAGGTCTAAAATTACAAGAGTTTAGAGGCCTACCAAAGTTTGTGGTATATTGCCTGACACAAACTAGTATTTAACTCAGAAAGATAACTTAACAGAGTATTCAGAAGTCCATGAATTTCAATAATGGAAGCAATTGAGGAAACAAATCATGAAGTGTCAGAAAGGGGGTTGAGCATCAATTAAGCTTAGTTGGAAACTGGTTTGTTGGAGATTCTTTTACACAAAGAAATTCAACATGTTTAATAACCAAGAAATCGAACCTATTACGTGTAGACAACAATTTAGCTTAATAGGTTGGCCCAACTATTCAACAACATTCTTTTGGTCCTACGATATTTTCCAGTGCCACACAGCCAGTGGTGCCCCTAGGTTTAGAGGAGCAAAGCTTCAAGTTCCCGAGTCATAAAAAAAAACCAATTCAACAACATTCAACACCACAAATAGCATTAAGCATAAATTTGATCACCAAAAATCTATAACTACAAGTTGCAGGGAAAAATAAACATGTCATCTCATTCAAAAAATTTCATGAGCAGCATCCAAATTTGCAATAACAAACTAGTCCCCTTTGACATTATCAGTTGGTTTAGAGAAAATCTACCTACATTGCTCTTGTATCCTGCAATTAAATTCCAAATCCTCCAAACTGTGCTGCTAATTCATTCACTGAAATTTCCAGCCCGCCAGAAGAACCACCTGCCATGGTCAGAATCATTACAGACTCAAGATCTGGAGAGCTGTACACGCCATCTCCAATATCCGAAAGGAACTCGACGCTAACATCTGGAGAGCAAAATACAGCACTGAATAAGCTGAAGAAAAAAGTGTACGATCCTCCAAACAACACAAATGGGAGAACAAGGTTCCATTACAGAGAGAACAACAAAGGAACTTACAGCGATGAAGAAGGCAAGAGATGCGCCGTTTGCCTGGAAGATTTCCGGCGAAAAGAGGAAGTGACGACGACGCCGTGCAACCATATGTTTCACGAAGAATGCATAGTGCCGTGGGTGAAGAGCCATGGCCAGTGTCCGAATTGCAGATCCGCCTTGTTCGAAAGAACGCGGCGAGGAGGAGCTTCGTCCGGTAACACTGTATCGATTGGGCGGCCGGCTAGTGGCTTCGTCGGCGACGAGCTTCTGTACTTCATACGCGCCATGGAAGATGCTCTGATGCTGCGAAGTATGGCCGGATTTTGGGGAGCTTGAACCGAAATCAACATGGAGAATGTCGTGAATTTCAGGAAATTATGAAATACGATCTCTGAAATTTGTTTTGACATTTGAAACGATAGAGCTCGATTTTAACCTAACCATGAAAGCATTCTCTCGTTTTGATCTTAATCTTGATCTTGGCGGTATAATTCTTCGCGGGCATTACTAGATAGAATGTACTGATTATGACTCATTATATAGTTAATAAAAATAAAGTCATTATATAGTTTTTGAGATCAAAGTCGTTAAAAATATTTTAAATT TTTCTCCTAAATTGAAATCTCCAAGCACCTCAAAAAAGTAAATCTATAATGGAGTGGGAATCTGACTATAGTCTTTTACGTGAGAATACAATAACCAAGCAAAAAAAAGCATGACAAAAAGAAACAAAAAGGACGGATAAAAGATGATGGTATGGAGGAGTATATATTCACTTGGATTAGCTACACATCTTCATGGAGTGAAAGAGCTATAAAATCCAGAACACTGAAAACCAACAATTTAAGATCTAAAAGATTAAAGAAGAAACTTATAAAAAAATGAGCAGACGTTCTACTAATTTTCCTCCAGGGATTTGGCAGACTAGAAGGCAATATGATCGCCAGAGGTATAACAGAAATGATTCAAACCATATGAACTCCACACCGCCACACCCTCGTCAATTTCAGAATTCTCATAGAGAGATAGATCAAGTTCCATGGAGGCCCACTGGAGAGATAGATGCAATTCCGTGGCAGCCTGCGGGTGAGACAATGATTACAAGAATATGGGACATTGGCGGCCCGCCAGAAGAACCACCTGCCATGGTCAGAATCATTACAGACTCAAGATCTGGAGAGCTGTACACGCCATCTCCAATATCCGAAAGGAACTCGACGCTAACATCTGGAGAGCAAAATACAGCACTGAATAAGCTGAAGAAAAAAGTGTACGATCCTCCAAACAACACAAATGGGAGAACAAGGTTCCATTACAGAGAGAACAACAAAGGAACTTACAGCGATGAAGAAGGCAAGAGATGCGCCGTTTGCCTGGAAGATTTCCGGCGAAAAGAGGAAGTGACGACGACGCCGTGCAACCATATGTTTCACGAAGAATGCATAGTGCCGTGGGTGAAGAGCCATGGCCAGTGTCCGAATTGCAGATCCGCCTTGTTCGAAAGAACGCGGCGAGGAGGAGCTTCGTCCGGTAACACTGTATCGATTGGGCGGCCGGCTAGTGGCTTCGTCGGCGACGAGCTTCTGTACTTCATACGCGCCATGGAAGATGCTCTGATGCTGCGAAGTATGGCCGGATTTTGGGGAGCTTGAACCGAAATCAACATGGAGAATGTCGTGAATTTCAGGAAATTATGAAATACGATCTCTGAAATTTGTTTTGACATTTGAAACGATAGAGCTCGATTTTAACCTAACCATGAAAGCATTCTCTCGTTTTGATCTTAATCTTGATCTTGGCGGTATAATTCTTCGCGGGCATTACTAGATAGAATGTACTGATTATGACTCATTATATAGTTAATAAAAATAAAGTCATTATATAGTTTTTGAGATCAAAGTCGTTAAAAATATTTTAAATT ATGAGCAGACGTTCTACTAATTTTCCTCCAGGGATTTGGCAGACTAGAAGGCAATATGATCGCCAGAGGTATAACAGAAATGATTCAAACCATATGAACTCCACACCGCCACACCCTCGTCAATTTCAGAATTCTCATAGAGAGATAGATCAAGTTCCATGGAGGCCCACTGGAGAGATAGATGCAATTCCGTGGCAGCCTGCGGGTGAGACAATGATTACAAGAATATGGGACATTGGCGGCCCGCCAGAAGAACCACCTGCCATGGTCAGAATCATTACAGACTCAAGATCTGGAGAGCTGTACACGCCATCTCCAATATCCGAAAGGAACTCGACGCTAACATCTGGAGAGCAAAATACAGCACTGAATAAGCTGAAGAAAAAAGTGTACGATCCTCCAAACAACACAAATGGGAGAACAAGGTTCCATTACAGAGAGAACAACAAAGGAACTTACAGCGATGAAGAAGGCAAGAGATGCGCCGTTTGCCTGGAAGATTTCCGGCGAAAAGAGGAAGTGACGACGACGCCGTGCAACCATATGTTTCACGAAGAATGCATAGTGCCGTGGGTGAAGAGCCATGGCCAGTGTCCGAATTGCAGATCCGCCTTGTTCGAAAGAACGCGGCGAGGAGGAGCTTCGTCCGGTAACACTGTATCGATTGGGCGGCCGGCTAGTGGCTTCGTCGGCGACGAGCTTCTGTACTTCATACGCGCCATGGAAGATGCTCTGATGCTGCGAAGTATGGCCGGATTTTGGGGAGCTTGA MSRRSTNFPPGIWQTRRQYDRQRYNRNDSNHMNSTPPHPRQFQNSHREIDQVPWRPTGEIDAIPWQPAGETMITRIWDIGGPPEEPPAMVRIITDSRSGELYTPSPISERNSTLTSGEQNTALNKLKKKVYDPPNNTNGRTRFHYRENNKGTYSDEEGKRCAVCLEDFRRKEEVTTTPCNHMFHEECIVPWVKSHGQCPNCRSALFERTRRGGASSGNTVSIGRPASGFVGDELLYFIRAMEDALMLRSMAGFWGA Homology
BLAST of Sed0016413 vs. NCBI nr
Match: XP_038888228.1 (uncharacterized protein LOC120078088 isoform X1 [Benincasa hispida]) HSP 1 Score: 355.1 bits (910), Expect = 4.9e-94 Identity = 187/274 (68.25%), Postives = 205/274 (74.82%), Query Frame = 0
BLAST of Sed0016413 vs. NCBI nr
Match: XP_022989128.1 (E3 ubiquitin-protein ligase EL5 [Cucurbita maxima]) HSP 1 Score: 347.4 bits (890), Expect = 1.0e-91 Identity = 181/282 (64.18%), Postives = 204/282 (72.34%), Query Frame = 0
BLAST of Sed0016413 vs. NCBI nr
Match: XP_008455285.1 (PREDICTED: E3 ubiquitin-protein ligase RNF12 isoform X1 [Cucumis melo]) HSP 1 Score: 345.5 bits (885), Expect = 3.9e-91 Identity = 187/275 (68.00%), Postives = 206/275 (74.91%), Query Frame = 0
BLAST of Sed0016413 vs. NCBI nr
Match: XP_023529368.1 (E3 ubiquitin-protein ligase EL5 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 344.7 bits (883), Expect = 6.7e-91 Identity = 179/282 (63.48%), Postives = 203/282 (71.99%), Query Frame = 0
BLAST of Sed0016413 vs. NCBI nr
Match: XP_004136838.1 (E3 ubiquitin-protein ligase AIRP1 [Cucumis sativus] >KGN43640.1 hypothetical protein Csa_017086 [Cucumis sativus]) HSP 1 Score: 343.2 bits (879), Expect = 1.9e-90 Identity = 184/275 (66.91%), Postives = 207/275 (75.27%), Query Frame = 0
BLAST of Sed0016413 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 1.6e-10 Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 0
BLAST of Sed0016413 vs. ExPASy Swiss-Prot
Match: Q91YL2 (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.6e-10 Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 0
BLAST of Sed0016413 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 2.1e-10 Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 0
BLAST of Sed0016413 vs. ExPASy Swiss-Prot
Match: Q6IRP0 (E3 ubiquitin-protein ligase RNF126-B OS=Xenopus laevis OX=8355 GN=rnf126-b PE=2 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 3.5e-10 Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0
BLAST of Sed0016413 vs. ExPASy Swiss-Prot
Match: Q9D0C1 (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 3.5e-10 Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 0
BLAST of Sed0016413 vs. ExPASy TrEMBL
Match: A0A6J1JPC8 (E3 ubiquitin-protein ligase EL5 OS=Cucurbita maxima OX=3661 GN=LOC111486293 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 5.0e-92 Identity = 181/282 (64.18%), Postives = 204/282 (72.34%), Query Frame = 0
BLAST of Sed0016413 vs. ExPASy TrEMBL
Match: A0A1S3C054 (E3 ubiquitin-protein ligase RNF12 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495488 PE=4 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 1.9e-91 Identity = 187/275 (68.00%), Postives = 206/275 (74.91%), Query Frame = 0
BLAST of Sed0016413 vs. ExPASy TrEMBL
Match: A0A0A0K1V1 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G049220 PE=4 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 9.4e-91 Identity = 184/275 (66.91%), Postives = 207/275 (75.27%), Query Frame = 0
BLAST of Sed0016413 vs. ExPASy TrEMBL
Match: A0A5A7SLQ9 (E3 ubiquitin-protein ligase RNF12 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G003130 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 1.6e-90 Identity = 185/273 (67.77%), Postives = 205/273 (75.09%), Query Frame = 0
BLAST of Sed0016413 vs. ExPASy TrEMBL
Match: A0A5D3C526 (E3 ubiquitin-protein ligase RNF12 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003170 PE=4 SV=1) HSP 1 Score: 342.0 bits (876), Expect = 2.1e-90 Identity = 185/273 (67.77%), Postives = 205/273 (75.09%), Query Frame = 0
BLAST of Sed0016413 vs. TAIR 10
Match: AT3G58720.1 (RING/U-box superfamily protein ) HSP 1 Score: 106.3 bits (264), Expect = 3.7e-23 Identity = 60/154 (38.96%), Postives = 89/154 (57.79%), Query Frame = 0
BLAST of Sed0016413 vs. TAIR 10
Match: AT3G58720.2 (RING/U-box superfamily protein ) HSP 1 Score: 106.3 bits (264), Expect = 3.7e-23 Identity = 60/154 (38.96%), Postives = 89/154 (57.79%), Query Frame = 0
BLAST of Sed0016413 vs. TAIR 10
Match: AT2G44330.1 (RING/U-box superfamily protein ) HSP 1 Score: 67.0 bits (162), Expect = 2.5e-11 Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of Sed0016413 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein ) HSP 1 Score: 65.5 bits (158), Expect = 7.3e-11 Identity = 28/68 (41.18%), Postives = 37/68 (54.41%), Query Frame = 0
BLAST of Sed0016413 vs. TAIR 10
Match: AT3G56580.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.5 bits (158), Expect = 7.3e-11 Identity = 28/68 (41.18%), Postives = 37/68 (54.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|