Sed0016375 (gene) Chayote v1

Overview


Name	Sed0016375
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcription factor IBH1-like 1
Location	LG11: 4756043 .. 4756822 (-)
RNA-Seq Expression	Sed0016375
Synteny	Sed0016375

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTCCCTTTTTTCTTTATATTCCTCTCTCTAATATTCAACTCTAGCTCTTTCTTAAAACCCTAAATTCTTCTTAAAAATCCAATCTTTCCTCAACTATCTTTTATTCTTCAACAAAATGCCAAACCCCAACAATCTCAAACAAATATTTCTCAAGAAATGGCAATTGGGTCTAGAGTCCATCACCTCCTCAAACAAAAACATGAACTTCTTAGATAGAAAAGAAGCCATTAAAATGTCTTCCGAATTGGCGATCGCTTCGACGAGAAACGGTGCGACTCTTTGGAGTCGAGCCATAATTGCCAAATCGGTAGCCGGCTACGCAGGTCAAGCTCCACGGGAGGTCATGTCGAGTCGTCGGTCGATTCAAAGGAAGGCAAGTATGAGGATACGAAAGATGGGTCGAAATGTTGAGCGGAAGCATTCGTGTAGGTCGAGGTCCTTGGCGAGATCAGTTGCCAAGAGATTGATTCAGAAAAGGACCAAAATTCTGAGGAGTTTGGTTCCTGGAGGAGAGTTTATGAAGGATGAAGTTTTGTTGATTGAAGAAGCCCTAGATTACATATCCTTTCTTCGAGTTCAAGTTGATGGAATGCGATTTCTTGCTAATTGCAAATGAGAATTCAAAGTTCATAATTACTTAATTAATTACTTTGTAATATCTTCTTTTTTTTTCCTTTTTAAAGGCTTGTTAGGGAGAAATATGTATTCACTCTGATGCAATATTGTACAGCTGAAAAAGAATATACAATTATGTAAATTTGAATATTTTGTTCTCTC

mRNA sequence

TCCTTCCCTTTTTTCTTTATATTCCTCTCTCTAATATTCAACTCTAGCTCTTTCTTAAAACCCTAAATTCTTCTTAAAAATCCAATCTTTCCTCAACTATCTTTTATTCTTCAACAAAATGCCAAACCCCAACAATCTCAAACAAATATTTCTCAAGAAATGGCAATTGGGTCTAGAGTCCATCACCTCCTCAAACAAAAACATGAACTTCTTAGATAGAAAAGAAGCCATTAAAATGTCTTCCGAATTGGCGATCGCTTCGACGAGAAACGGTGCGACTCTTTGGAGTCGAGCCATAATTGCCAAATCGGTAGCCGGCTACGCAGGTCAAGCTCCACGGGAGGTCATGTCGAGTCGTCGGTCGATTCAAAGGAAGGCAAGTATGAGGATACGAAAGATGGGTCGAAATGTTGAGCGGAAGCATTCGTGTAGGTCGAGGTCCTTGGCGAGATCAGTTGCCAAGAGATTGATTCAGAAAAGGACCAAAATTCTGAGGAGTTTGGTTCCTGGAGGAGAGTTTATGAAGGATGAAGTTTTGTTGATTGAAGAAGCCCTAGATTACATATCCTTTCTTCGAGTTCAAGTTGATGGAATGCGATTTCTTGCTAATTGCAAATGAGAATTCAAAGTTCATAATTACTTAATTAATTACTTTGTAATATCTTCTTTTTTTTTCCTTTTTAAAGGCTTGTTAGGGAGAAATATGTATTCACTCTGATGCAATATTGTACAGCTGAAAAAGAATATACAATTATGTAAATTTGAATATTTTGTTCTCTC

Coding sequence (CDS)

ATGCCAAACCCCAACAATCTCAAACAAATATTTCTCAAGAAATGGCAATTGGGTCTAGAGTCCATCACCTCCTCAAACAAAAACATGAACTTCTTAGATAGAAAAGAAGCCATTAAAATGTCTTCCGAATTGGCGATCGCTTCGACGAGAAACGGTGCGACTCTTTGGAGTCGAGCCATAATTGCCAAATCGGTAGCCGGCTACGCAGGTCAAGCTCCACGGGAGGTCATGTCGAGTCGTCGGTCGATTCAAAGGAAGGCAAGTATGAGGATACGAAAGATGGGTCGAAATGTTGAGCGGAAGCATTCGTGTAGGTCGAGGTCCTTGGCGAGATCAGTTGCCAAGAGATTGATTCAGAAAAGGACCAAAATTCTGAGGAGTTTGGTTCCTGGAGGAGAGTTTATGAAGGATGAAGTTTTGTTGATTGAAGAAGCCCTAGATTACATATCCTTTCTTCGAGTTCAAGTTGATGGAATGCGATTTCTTGCTAATTGCAAATGA

Protein sequence

MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAIIAKSVAGYAGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSRSLARSVAKRLIQKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLANCK

Homology

[Close]

BLAST of Sed0016375 vs. NCBI nr
Match: XP_023537774.1 (transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 116/168 (69.05%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           MPNP NLKQIF+KKW +GL  IT SN NMNFL+RK AIK +S+LA+A+TRNGAT WSRAI
Sbjct: 1   MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMATTRNGATRWSRAI 60

Query: 61  IAKSVAGYAGQAPREVMSSRRSIQRKASMRIRKMGRNVERK--HSCRSRSLARSVAKRLI 120
           IAKS+     QAP E    R+++       +RK+GR V R+  H+ RSRS+ARSVAKRL+
Sbjct: 61  IAKSI-----QAPPEAKLRRKTM-------LRKIGRKVARRHTHTSRSRSVARSVAKRLV 120

Query: 121 QKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLANCK 167
            KRTK+LRSLVPGGEFMKDE LLI+EALDYISFLRVQVDGMRFLANCK
Sbjct: 121 HKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLANCK 156

[Close]

BLAST of Sed0016375 vs. NCBI nr
Match: XP_022965992.1 (transcription factor IBH1-like 1 [Cucurbita maxima])

HSP 1 Score: 205.7 bits (522), Expect = 3.1e-49
Identity = 115/168 (68.45%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           MPNP NLK+IFLKKW +GL  IT SN  MNFL+RK+AIK SS+LA+A+TRNGAT WSRAI
Sbjct: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60

Query: 61  IAKSVAGYAGQAPREVMSSRRSIQRKASMRIRKMGRNVERK--HSCRSRSLARSVAKRLI 120
           IAKS+     QAP E    R++        + K+GR + R+  HS RSRS+ARSVAKRL+
Sbjct: 61  IAKSI-----QAPTEAKLRRKT-------TLHKIGRKLARRHTHSSRSRSVARSVAKRLV 120

Query: 121 QKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLANCK 167
           QKRTK+LRSLVPGGEFM+DE LLI+EALDYISFLRVQVDGMRFLANCK
Sbjct: 121 QKRTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK 156

[Close]

BLAST of Sed0016375 vs. NCBI nr
Match: XP_022938061.1 (transcription factor IBH1-like 1 [Cucurbita moschata])

HSP 1 Score: 204.1 bits (518), Expect = 9.1e-49
Identity = 115/166 (69.28%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           MPNP NLKQIF+KKW +GL  IT SN NMNFL+RK AIK +S+LA+A+TRNGAT WSRAI
Sbjct: 1   MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAI 60

Query: 61  IAKSVAGYAGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSRSLARSVAKRLIQK 120
           IAKS+     QAP E    R+++ RK +   RK+ R+  R H  RSRS+ARSVAKRL+ K
Sbjct: 61  IAKSI-----QAPPEAKLRRKTMLRKIA---RKVARS--RTHLSRSRSVARSVAKRLVHK 120

Query: 121 RTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLANCK 167
           RTK+LRSLVPGGEFMKDE LLI+EALDYISFLRVQVDGMRFLA+CK
Sbjct: 121 RTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK 156

[Close]

BLAST of Sed0016375 vs. NCBI nr
Match: KAG6586187.1 (Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 4.5e-48
Identity = 113/166 (68.07%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           MPNP NLKQIF+KKW +GL  IT SN NMNFL+RK AIK +S+LA+A+TRNGAT WSRAI
Sbjct: 1   MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAI 60

Query: 61  IAKSVAGYAGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSRSLARSVAKRLIQK 120
           IAKS+     QAP E    R++  RK +   RK+ R+       RSRS+ARSVAKRL+ K
Sbjct: 61  IAKSI-----QAPPEAKLRRKTTLRKIA---RKVARSRTHLSRSRSRSVARSVAKRLVHK 120

Query: 121 RTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLANCK 167
           RTK+LRSLVPGGEFMKDE LLI+EALDYISFLRVQVDGMRFLA+CK
Sbjct: 121 RTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK 158

[Close]

BLAST of Sed0016375 vs. NCBI nr
Match: XP_038890559.1 (transcription factor IBH1-like 1 [Benincasa hispida])

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-47
Identity = 119/178 (66.85%), Postives = 143/178 (80.34%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           MPNPN LKQ FLKKW +GL+S TSSN NMN L+RK+AIKMS++ A+A+TRNG+T+WSRAI
Sbjct: 1   MPNPNKLKQQFLKKWLVGLKSTTSSNTNMNILERKKAIKMSADYAMAATRNGSTIWSRAI 60

Query: 61  IAKSVAGYAGQAPREVMSSRRSI----QRK--ASMRIRKMGRNVERKHSCRSRS-----L 120
           IAKS+    GQAP E +S+R++I    QRK   +  + KMGR V RK   RSRS     L
Sbjct: 61  IAKSI---KGQAPLEAISNRQTIYAKLQRKKMTTTTLWKMGRRVGRK-VARSRSPPWKAL 120

Query: 121 ARSVAKRLIQKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLAN-CK 167
           AR+VAKRL++KRTK+LRSLVPGGEFM+DEVLLIEEALDYI+FL+ QVDGMRFLAN CK
Sbjct: 121 ARTVAKRLVEKRTKVLRSLVPGGEFMEDEVLLIEEALDYITFLQAQVDGMRFLANYCK 174

[Close]

BLAST of Sed0016375 vs. ExPASy Swiss-Prot
Match: Q9M0B9 (Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-20
Identity = 61/172 (35.47%), Postives = 104/172 (60.47%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           M   +++ + FLKKWQ+GL+    S  N +  +RK+AIK+S+++A+AS R G T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IAKSVAG--------YAGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSRSLARS 120
           I K+            +G     +++ +   +     +I +  + + R+ S  +   A +
Sbjct: 61  IEKTATEDNFLVRQMLSGIKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSASEEAAA 120

Query: 121 VAKRLIQKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLAN 165
            AKRL+++RT+ LR++VPGGE M ++VLL++E LDYI  L+ QV+ MR + +
Sbjct: 121 KAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVD 172

[Close]

BLAST of Sed0016375 vs. ExPASy Swiss-Prot
Match: Q9C8Z9 (Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.2e-04
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 9   QIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAIIAKSVAGY 68
           ++F    Q+ L S  S++ +     R +A++ +++ A+A +  G TLWSRAI+A  +   
Sbjct: 60  KLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIK-- 119

Query: 69  AGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSR----SLARSVAKRL--IQKRT 128
                   +  R+  + +A+M I  M   V    S RSR    S+ R   K +  + ++ 
Sbjct: 120 --------LKFRKQRRPRATMAIPAM-TTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKV 179

Query: 129 KILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFL 163
           ++L  LVPG       V+L EEA DYI  L +QV  M  L
Sbjct: 180 RVLGRLVPGCGKQSVPVIL-EEATDYIQALEMQVRAMNSL 207

[Close]

BLAST of Sed0016375 vs. ExPASy TrEMBL
Match: A0A6J1HLT3 (transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111465712 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.5e-49
Identity = 115/168 (68.45%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           MPNP NLK+IFLKKW +GL  IT SN  MNFL+RK+AIK SS+LA+A+TRNGAT WSRAI
Sbjct: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60

Query: 61  IAKSVAGYAGQAPREVMSSRRSIQRKASMRIRKMGRNVERK--HSCRSRSLARSVAKRLI 120
           IAKS+     QAP E    R++        + K+GR + R+  HS RSRS+ARSVAKRL+
Sbjct: 61  IAKSI-----QAPTEAKLRRKT-------TLHKIGRKLARRHTHSSRSRSVARSVAKRLV 120

Query: 121 QKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLANCK 167
           QKRTK+LRSLVPGGEFM+DE LLI+EALDYISFLRVQVDGMRFLANCK
Sbjct: 121 QKRTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK 156

[Close]

BLAST of Sed0016375 vs. ExPASy TrEMBL
Match: A0A6J1FC37 (transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111444263 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.4e-49
Identity = 115/166 (69.28%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           MPNP NLKQIF+KKW +GL  IT SN NMNFL+RK AIK +S+LA+A+TRNGAT WSRAI
Sbjct: 1   MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAI 60

Query: 61  IAKSVAGYAGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSRSLARSVAKRLIQK 120
           IAKS+     QAP E    R+++ RK +   RK+ R+  R H  RSRS+ARSVAKRL+ K
Sbjct: 61  IAKSI-----QAPPEAKLRRKTMLRKIA---RKVARS--RTHLSRSRSVARSVAKRLVHK 120

Query: 121 RTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLANCK 167
           RTK+LRSLVPGGEFMKDE LLI+EALDYISFLRVQVDGMRFLA+CK
Sbjct: 121 RTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK 156

[Close]

BLAST of Sed0016375 vs. ExPASy TrEMBL
Match: A0A5D3CK75 (Transcription factor IBH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00030 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.3e-45
Identity = 108/178 (60.67%), Postives = 140/178 (78.65%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           MPNPN LKQ FLK W +GL+S TSS  NMNFLDRK+AIK+S++ A+A+TRNG T+WS++I
Sbjct: 1   MPNPNKLKQQFLKNWLVGLQSTTSSTTNMNFLDRKKAIKISADYAMAATRNGTTIWSQSI 60

Query: 61  IAKSVAGYAGQAPREVMSSRRS-----IQRKASM-RIRKMGRNVERKHSCRSR-----SL 120
           IAKS+ G+   AP E + +RR+     +++K +M ++RKMGR + RK + RSR     +L
Sbjct: 61  IAKSLKGH---APPEAILNRRTSYINLLRKKRTMTQLRKMGRKIGRKMARRSRLPLSKAL 120

Query: 121 ARSVAKRLIQKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLAN-CK 167
             ++AKRL++KRTK+LRSL+PGGEFMKDE LLIEEALDYI FL+ QVDGMRFLAN CK
Sbjct: 121 PSTIAKRLVEKRTKVLRSLIPGGEFMKDEALLIEEALDYIPFLQAQVDGMRFLANYCK 175

[Close]

BLAST of Sed0016375 vs. ExPASy TrEMBL
Match: A0A1S3BT01 (uncharacterized protein LOC103493395 OS=Cucumis melo OX=3656 GN=LOC103493395 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.6e-43
Identity = 106/178 (59.55%), Postives = 138/178 (77.53%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           MPN N LKQ FLK W +GL+S TSS  NMNFLDRK+AIK+S++ A+A+TRNG T+WS++I
Sbjct: 1   MPNLNKLKQQFLKNWLVGLQSTTSSTTNMNFLDRKKAIKISADYAMAATRNGTTIWSQSI 60

Query: 61  IAKSVAGYAGQAPREVMSSRRS-----IQRKASM-RIRKMGRNVERKHSCRSR-----SL 120
           IAK + G+   AP E + +RR+     +++K +M ++RKMGR + RK + RSR     +L
Sbjct: 61  IAKYLKGH---APPEAILNRRTSYINLLRKKRTMTQLRKMGRKIGRKMARRSRLPLSKAL 120

Query: 121 ARSVAKRLIQKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLAN-CK 167
             ++AKRL++KRTK+LRSL+PGGEFMKDE LLIEEALDYI FL+ QVDGMRFLAN CK
Sbjct: 121 PSTIAKRLVEKRTKVLRSLIPGGEFMKDEALLIEEALDYIPFLQAQVDGMRFLANYCK 175

[Close]

BLAST of Sed0016375 vs. ExPASy TrEMBL
Match: A0A0A0LM92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047790 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 4.0e-42
Identity = 104/180 (57.78%), Postives = 137/180 (76.11%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSN-KNMNFLDRKEAIKMSSELAIASTRNGATLWSRA 60
           MPNPN LKQ FLKKW +GL S TSS+  NMNFLDRK+AIK+S++ A+A TR G T+WS++
Sbjct: 1   MPNPNKLKQQFLKKWLVGLRSTTSSSTTNMNFLDRKKAIKISADYAMAETRKGTTIWSQS 60

Query: 61  IIAKSVAGYAGQAPREVMSSRRSI------QRKASMRIRKMGRNVERKHSCRSR-----S 120
           IIAKS+ G+   AP + + +R +I      +++   +++KMGR + R+ + RSR      
Sbjct: 61  IIAKSLKGH---APPKAILNRGTIYINLLRKKRTMTQLQKMGRKIGRRMARRSRLPSSKV 120

Query: 121 LARSVAKRLIQKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLAN--CK 167
           L R++AKRL++KRTK+LRSL+PGGEFM+DEVLLIEEALDYI FL+ QVDGMRFLAN  CK
Sbjct: 121 LPRTIAKRLVEKRTKVLRSLIPGGEFMEDEVLLIEEALDYIPFLQAQVDGMRFLANYYCK 177

[Close]

BLAST of Sed0016375 vs. TAIR 10
Match: AT4G30410.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21
Identity = 61/172 (35.47%), Postives = 104/172 (60.47%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           M   +++ + FLKKWQ+GL+    S  N +  +RK+AIK+S+++A+AS R G T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IAKSVAG--------YAGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSRSLARS 120
           I K+            +G     +++ +   +     +I +  + + R+ S  +   A +
Sbjct: 61  IEKTATEDNFLVRQMLSGIKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSASEEAAA 120

Query: 121 VAKRLIQKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLAN 165
            AKRL+++RT+ LR++VPGGE M ++VLL++E LDYI  L+ QV+ MR + +
Sbjct: 121 KAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVD 172

[Close]

BLAST of Sed0016375 vs. TAIR 10
Match: AT4G30410.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21
Identity = 61/172 (35.47%), Postives = 104/172 (60.47%), Query Frame = 0


Query: 1   MPNPNNLKQIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAI 60
           M   +++ + FLKKWQ+GL+    S  N +  +RK+AIK+S+++A+AS R G T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IAKSVAG--------YAGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSRSLARS 120
           I K+            +G     +++ +   +     +I +  + + R+ S  +   A +
Sbjct: 61  IEKTATEDNFLVRQMLSGIKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSASEEAAA 120

Query: 121 VAKRLIQKRTKILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLAN 165
            AKRL+++RT+ LR++VPGGE M ++VLL++E LDYI  L+ QV+ MR + +
Sbjct: 121 KAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVD 172

[Close]

BLAST of Sed0016375 vs. TAIR 10
Match: AT5G57780.1 (EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G30410.1); Has 123 Blast hits to 123 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21
Identity = 65/160 (40.62%), Postives = 95/160 (59.38%), Query Frame = 0


Query: 5   NNLKQIFLKKWQLGLESITSSNKN-MNFLDRKEAIKMSSELAIASTRNGATLWSRAIIAK 64
           N +KQ F+KKW   L  + SS ++ +N  +RK AI++SS+LA+A+ RNG+T+WSRA+I++
Sbjct: 6   NMVKQEFIKKWINTLHMLDSSIEHPLNVTERKNAIRLSSDLAMAAARNGSTVWSRALISR 65

Query: 65  SVAGYAGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSRSLARSVAKRLIQKRTK 124
                         S  ++  +  + RI K  RN  +      R      AK  ++KRT 
Sbjct: 66  --------------SGNKTANKPMARRILKKARNRMKNRCNILRRNGNFTAKTWVRKRTD 125

Query: 125 ILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFLA 164
           +L+SLVPGGE + D+  LI E LDYI +LR QVD MR +A
Sbjct: 126 LLKSLVPGGELIDDKDYLIRETLDYIVYLRAQVDVMRTVA 151

[Close]

BLAST of Sed0016375 vs. TAIR 10
Match: AT3G06590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.0e-05
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 9   QIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAIIAKSVAGY 68
           ++F    Q+ L S  S++ +     R +A++ +++ A+A +  G TLWSRAI+A  +   
Sbjct: 60  KLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIK-- 119

Query: 69  AGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSR----SLARSVAKRL--IQKRT 128
                   +  R+  + +A+M I  M   V    S RSR    S+ R   K +  + ++ 
Sbjct: 120 --------LKFRKQRRPRATMAIPAM-TTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKV 179

Query: 129 KILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFL 163
           ++L  LVPG       V+L EEA DYI  L +QV  M  L
Sbjct: 180 RVLGRLVPGCGKQSVPVIL-EEATDYIQALEMQVRAMNSL 207

[Close]

BLAST of Sed0016375 vs. TAIR 10
Match: AT3G06590.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.0e-05
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 9   QIFLKKWQLGLESITSSNKNMNFLDRKEAIKMSSELAIASTRNGATLWSRAIIAKSVAGY 68
           ++F    Q+ L S  S++ +     R +A++ +++ A+A +  G TLWSRAI+A  +   
Sbjct: 60  KLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIK-- 119

Query: 69  AGQAPREVMSSRRSIQRKASMRIRKMGRNVERKHSCRSR----SLARSVAKRL--IQKRT 128
                   +  R+  + +A+M I  M   V    S RSR    S+ R   K +  + ++ 
Sbjct: 120 --------LKFRKQRRPRATMAIPAM-TTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKV 179

Query: 129 KILRSLVPGGEFMKDEVLLIEEALDYISFLRVQVDGMRFL 163
           ++L  LVPG       V+L EEA DYI  L +QV  M  L
Sbjct: 180 RVLGRLVPGCGKQSVPVIL-EEATDYIQALEMQVRAMNSL 207

The following BLAST results are available for this feature:

BLAST of Sed0016375 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537774.1	2.2e-50	69.05	transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022965992.1	3.1e-49	68.45	transcription factor IBH1-like 1 [Cucurbita maxima]	[more]
XP_022938061.1	9.1e-49	69.28	transcription factor IBH1-like 1 [Cucurbita moschata]	[more]
KAG6586187.1	4.5e-48	68.07	Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_038890559.1	1.3e-47	66.85	transcription factor IBH1-like 1 [Benincasa hispida]	[more]

BLAST of Sed0016375 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0B9	1.4e-20	35.47	Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV...	[more]
Q9C8Z9	4.2e-04	30.63	Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=...	[more]

BLAST of Sed0016375 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLT3	1.5e-49	68.45	transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111465712 PE=...	[more]
A0A6J1FC37	4.4e-49	69.28	transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111444263 P...	[more]
A0A5D3CK75	2.3e-45	60.67	Transcription factor IBH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BT01	1.6e-43	59.55	uncharacterized protein LOC103493395 OS=Cucumis melo OX=3656 GN=LOC103493395 PE=...	[more]
A0A0A0LM92	4.0e-42	57.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047790 PE=4 SV=1	[more]

BLAST of Sed0016375 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30410.2	1.0e-21	35.47	sequence-specific DNA binding transcription factors	[more]
AT4G30410.1	1.0e-21	35.47	sequence-specific DNA binding transcription factors	[more]
AT5G57780.1	1.0e-21	40.63	EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arab...	[more]
AT3G06590.1	3.0e-05	30.63	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G06590.2	3.0e-05	30.63	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 5..164
None	No IPR available	PANTHER	PTHR33124:SF5	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 5..164
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 110..163 e-value: 4.59929E-12 score: 56.0916

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016375.1	Sed0016375.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding