Sed0016320 (gene) Chayote v1

Overview


Name	Sed0016320
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcription factor DYT1
Location	LG11: 20499478 .. 20500818 (+)
RNA-Seq Expression	Sed0016320
Synteny	Sed0016320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATATGCTGGCCGTACACCGAGCAGTCTACGCATCTTTGAAGAAGATAACAGCAGGCGACGATTGACAATGGGACACACTGATGAATCCACTCGATTCAAATCCAAGAACCTCAACGCGGAGAGACGACGGAGGAAGAAGCTTAGCGATAGACTACTGTTACTGCGTGCTACTGTCCCCATCATCACAAATGCAACCTCCCTCCCTCGAAATTCTTCTAATTACTCCATTCATTTTCAAAATGTAGCCTTTTTTTAATCTATTATACCTTTGTCATTATTTTTTTAGATGAGTAAAGCAACTATTATCGACGACGCCATAACGTACATTCAGCAGCAGCAGAAGACGGTTAATATTCTCAAAGACCAGCTTGTTCAATTGGAGGCATCGTCTCAAAAAATACCATCGCCAACACCACCGGACTCTAACAAAACTTATATTCAGGTTGCCCTAACTATCTACTTCATGAATGTTATGTTCCTATATGAGGTTTATTTTATATTTTTCGAATATTTATAGCAATTTACTAATTCAACTATTATTGAAAACAGGCCGACGTGCGGGTTTCTCAAATTGACGGACAGAAACTTTGGATTAAAATACTTTTTGAGAAGCGAAAAGGCGCATTCACTAAATTAGTTCAAGCGTTGAATTCTCAAGGCTTTGAGCTCATTGACACTAGTGTCACAACAGTAAATGGCGTGGTTCTTGTAACCAGCATTATCAATGTAAGTCACAAGATCAAAATTTCTAATCTCTAAGTTCTTACCTAATTATTAGAATCTTTATTTATGTCTATAAATATTAATTTTCCCGTAAAGTTTAATTCTTTTGTTTAAAAAGAAAATCAACAACCGTTTTCTGGGCAGTAATTTTTTTTTGTTTTTCGTTTGTGTTTCACTGTATTAATTAAATAGATGTCAAGCATGAGTTTGTTTATTTACTTACTTTTTGAAGAATATGTATCAAACAGAAGTATGTGTGTTTATTACATTGGTTTTACATGTGTTTATTTCTGCGGCAATCATTGCCATCTAACTAATTAAGTTCAATATTCTGGCCATAGTACAATATCTGTTAGTTAGAGGATTTAAACTTTCGATTTTGTGGTCTAAAAATGTATTGACCAAAGATTAAGTTTTATTCTAAAATAAATTTCGAACAAAGGTGGTTTGTTAAAAACCCTTTTTTTTTCTATGGATCTCAAGGATGTGTTCGTATATATGTGGAAGGACTAATTTTTGTTTGGAAATTATTTAATTTAAATAGGGATATTTTGGTACTTCATCAGTTCAGCACACCGAAGACTTGCTGCTCCGGATCGTTAATGGATTTTAA

mRNA sequence

ATGGCATATGCTGGCCGTACACCGAGCAGTCTACGCATCTTTGAAGAAGATAACAGCAGGCGACGATTGACAATGGGACACACTGATGAATCCACTCGATTCAAATCCAAGAACCTCAACGCGGAGAGACGACGGAGGAAGAAGCTTAGCGATAGACTACTGTTACTGCGTGCTACTGTCCCCATCATCACAAATGCAACCTCCCTCCCTCGAAATTCTTCTAATTACTCCATTCATTTTCAAAATATGAGTAAAGCAACTATTATCGACGACGCCATAACGTACATTCAGCAGCAGCAGAAGACGGTTAATATTCTCAAAGACCAGCTTGTTCAATTGGAGGCATCGTCTCAAAAAATACCATCGCCAACACCACCGGACTCTAACAAAACTTATATTCAGGCCGACGTGCGGGTTTCTCAAATTGACGGACAGAAACTTTGGATTAAAATACTTTTTGAGAAGCGAAAAGGCGCATTCACTAAATTAGTTCAAGCGTTGAATTCTCAAGGCTTTGAGCTCATTGACACTAGTGTCACAACAGTAAATGGCGTGGTTCTTGTAACCAGCATTATCAATGGATATTTTGGTACTTCATCAGTTCAGCACACCGAAGACTTGCTGCTCCGGATCGTTAATGGATTTTAA

Coding sequence (CDS)

ATGGCATATGCTGGCCGTACACCGAGCAGTCTACGCATCTTTGAAGAAGATAACAGCAGGCGACGATTGACAATGGGACACACTGATGAATCCACTCGATTCAAATCCAAGAACCTCAACGCGGAGAGACGACGGAGGAAGAAGCTTAGCGATAGACTACTGTTACTGCGTGCTACTGTCCCCATCATCACAAATGCAACCTCCCTCCCTCGAAATTCTTCTAATTACTCCATTCATTTTCAAAATATGAGTAAAGCAACTATTATCGACGACGCCATAACGTACATTCAGCAGCAGCAGAAGACGGTTAATATTCTCAAAGACCAGCTTGTTCAATTGGAGGCATCGTCTCAAAAAATACCATCGCCAACACCACCGGACTCTAACAAAACTTATATTCAGGCCGACGTGCGGGTTTCTCAAATTGACGGACAGAAACTTTGGATTAAAATACTTTTTGAGAAGCGAAAAGGCGCATTCACTAAATTAGTTCAAGCGTTGAATTCTCAAGGCTTTGAGCTCATTGACACTAGTGTCACAACAGTAAATGGCGTGGTTCTTGTAACCAGCATTATCAATGGATATTTTGGTACTTCATCAGTTCAGCACACCGAAGACTTGCTGCTCCGGATCGTTAATGGATTTTAA

Protein sequence

MAYAGRTPSSLRIFEEDNSRRRLTMGHTDESTRFKSKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQKIPSPTPPDSNKTYIQADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNGVVLVTSIINGYFGTSSVQHTEDLLLRIVNGF

Homology

[Close]

BLAST of Sed0016320 vs. NCBI nr
Match: XP_022930020.1 (transcription factor DYT1 [Cucurbita moschata])

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-57
Identity = 143/222 (64.41%), Postives = 158/222 (71.17%), Query Frame = 0


Query: 1   MAYAGRTPSSLRIFEEDNSRRRLTMGH--TDESTRFKSKNLNAERRRRKKLSDRLLLLRA 60
           MAYA      LR FEE    R +T     TDES  +KSKNL+AERRRR+KLSDRLLLLRA
Sbjct: 1   MAYASSGSDDLRTFEEQADTRSITNRRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRA 60

Query: 61  TVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQ 120
           TVPIIT                 NM+KATII+DAITYI+Q QK VNILKDQLV+LE S++
Sbjct: 61  TVPIIT-----------------NMNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAE 120

Query: 121 KIPSP-------TPPDSNKTYIQADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQG 180
           K P P       TP  SNK YIQADV VSQID  KLWIKILFEKRKGAFTKL+QA+NS G
Sbjct: 121 KTPWPTIPQDSTTPTQSNKGYIQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVG 180

Query: 181 FELIDTSVTTVNGVVLVTSIINGYFGTSSVQHTEDLLLRIVN 214
           FEL DTSVTTV G VLVT++ING   TS+ Q TEDLLL IVN
Sbjct: 181 FELTDTSVTTVQGAVLVTTLING-ICTSTAQQTEDLLLGIVN 204

[Close]

BLAST of Sed0016320 vs. NCBI nr
Match: XP_022146507.1 (transcription factor DYT1, partial [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-45
Identity = 118/201 (58.71%), Postives = 141/201 (70.15%), Query Frame = 0


Query: 1   MAYAGRTPSSLRIFEEDNSRRRL--TMGHTDESTRFKSKNLNAERRRRKKLSDRLLLLRA 60
           MA+ G  P  LR+ EE++    +      TDES ++KSKNL+AERRRR+KLSDRLLLLRA
Sbjct: 1   MAFVGFQPDELRMIEEESGSSSIKGQRRSTDESAKYKSKNLHAERRRRQKLSDRLLLLRA 60

Query: 61  TVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQ 120
           T                       M+KATII+DAITYIQQ Q+ V+ILKDQLV+LEASS+
Sbjct: 61  T-----------------------MNKATIIEDAITYIQQLQQKVDILKDQLVELEASSE 120

Query: 121 KIPSPTPPD------SNKTYIQADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGF 180
           K   PTP D        ++YIQADVRV+QID QKLW+KILFEK+KGAFTKL+Q L+S GF
Sbjct: 121 KNIWPTPRDIEAPINIKRSYIQADVRVTQIDEQKLWVKILFEKQKGAFTKLIQGLDSFGF 178

Query: 181 ELIDTSVTTVNGVVLVTSIIN 194
           ELID SVTTV G VLVT+IIN
Sbjct: 181 ELIDISVTTVKGAVLVTTIIN 178

[Close]

BLAST of Sed0016320 vs. NCBI nr
Match: KAG6601683.1 (Transcription factor DYT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.0 bits (463), Expect = 2.8e-42
Identity = 100/138 (72.46%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 83  MSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQKIPSP-------TPPDSNKTYIQA 142
           M+KATII+DAITYI+Q QK VNILKDQLV+LE S++K P P       TP  SNK+YIQA
Sbjct: 1   MNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTIPTDSTTPTQSNKSYIQA 60

Query: 143 DVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNGVVLVTSIINGY 202
           DV VSQID  KLWIKILFEKRKGAFTKL+QA+NS GFEL DTSVTTV G VLVT++ING 
Sbjct: 61  DVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLINGI 120

Query: 203 FGTSSVQHTEDLLLRIVN 214
           F TS+ Q TEDLLL IVN
Sbjct: 121 FCTSTAQQTEDLLLGIVN 138

[Close]

BLAST of Sed0016320 vs. NCBI nr
Match: XP_022994545.1 (transcription factor DYT1 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 2.8e-42
Identity = 100/138 (72.46%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 83  MSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQKIPSP-------TPPDSNKTYIQA 142
           M+KATII+DAITYI+Q QK VNILKDQLV+LE S++K P P       TP  SNK+YIQA
Sbjct: 1   MNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQSNKSYIQA 60

Query: 143 DVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNGVVLVTSIINGY 202
           DV VSQID  KLWIKILFEKRKGAFTKL+QA+NS GFEL DTSVTTV G VLVT++ING 
Sbjct: 61  DVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLINGI 120

Query: 203 FGTSSVQHTEDLLLRIVN 214
           F TS+ Q TEDLLL IVN
Sbjct: 121 FCTSTAQQTEDLLLGIVN 138

[Close]

BLAST of Sed0016320 vs. NCBI nr
Match: XP_023876547.1 (transcription factor DYT1-like [Quercus suber])

HSP 1 Score: 177.9 bits (450), Expect = 9.0e-41
Identity = 110/223 (49.33%), Postives = 145/223 (65.02%), Query Frame = 0


Query: 1   MAYAGRTPSSLRIFEEDNSRRRLTMGH--TDESTRFKSKNLNAERRRRKKLSDRLLLLRA 60
           M Y G     L I +E NSR R+       D+ T FKSKNL AERRRR+KLSDRLL LRA
Sbjct: 1   MEYVGSALDGLFITKEGNSRGRVGRRRYSNDDGTEFKSKNLQAERRRRQKLSDRLLALRA 60

Query: 61  TVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQ 120
            VPIIT                 NM+KATII+DAI+YI++ Q  V +L+  L ++EASS+
Sbjct: 61  LVPIIT-----------------NMNKATIIEDAISYIEELQNNVKVLQGLLYEMEASSE 120

Query: 121 KIPSP------TPPDSNKTYIQADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGF 180
           +   P         +  K+ IQA+V V+QIDG KLWIKI+FEK++G FT+L++A+ + GF
Sbjct: 121 EGALPRSEEIDPAEEMRKSGIQAEVEVTQIDGNKLWIKIIFEKKRGGFTRLMEAMTAFGF 180

Query: 181 ELIDTSVTTVNGVVLVTSIINGYFG-TSSVQHTEDLLLRIVNG 215
           ELIDTSVTT  G +LV+S + G  G  + VQ T++LLL+I+NG
Sbjct: 181 ELIDTSVTTSKGAMLVSSCVKGIHGEINVVQRTKELLLQIING 206

[Close]

BLAST of Sed0016320 vs. ExPASy Swiss-Prot
Match: O81900 (Transcription factor DYT1 OS=Arabidopsis thaliana OX=3702 GN=DYT1 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-23
Identity = 75/208 (36.06%), Postives = 113/208 (54.33%), Query Frame = 0


Query: 19  SRRRLTMGHTDESTRFKSKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPRNSSNYSI 78
           SRR+      +E   FKS NL AERRRR+KL  RL+ LR+ VPI+T              
Sbjct: 14  SRRKQVTKEKEEDENFKSPNLEAERRRREKLHCRLMALRSHVPIVT-------------- 73

Query: 79  HFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQKI----------PSPTPPDS 138
              NM+KA+I++DAITYI + Q  V  L +   ++E +  +I          P     D 
Sbjct: 74  ---NMTKASIVEDAITYIGELQNNVKNLLETFHEMEEAPPEIDEEQTDPMIKPEVETSDL 133

Query: 139 N----KTYIQADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNG 198
           N    K  I+ +V++ +I  +K W+KI+ EKR G FTK ++ +   GFE+ID S+TT NG
Sbjct: 134 NEEMKKLGIEENVQLCKIGERKFWLKIITEKRDGIFTKFMEVMRFLGFEIIDISLTTSNG 193

Query: 199 VVLVTSIINGYFGTSSVQHTEDLLLRIV 213
            +L+++ +        V+ T+D LL ++
Sbjct: 194 AILISASVQTQ-ELCDVEQTKDFLLEVM 203

[Close]

BLAST of Sed0016320 vs. ExPASy Swiss-Prot
Match: Q9ZVX2 (Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana OX=3702 GN=AMS PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-10
Identity = 61/216 (28.24%), Postives = 103/216 (47.69%), Query Frame = 0


Query: 12  RIFEEDNSRRRLTMGHTDESTRFKSKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPR 71
           +I +ED+ + +   G   +     +KNL AERRRRKKL+DRL  LR+ VP IT       
Sbjct: 294 QIDDEDDPKYKKKSGKGSQ-----AKNLMAERRRRKKLNDRLYALRSLVPRIT------- 353

Query: 72  NSSNYSIHFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQKIPSPTPP----- 131
                      + +A+I+ DAI Y+++ Q     L+D   +LE +S+       P     
Sbjct: 354 ----------KLDRASILGDAINYVKELQNEAKELQD---ELEENSETEDGSNRPQGGMS 413

Query: 132 ---------------DSNKTYIQAD----------------VRVSQIDGQKLWIKILFEK 191
                          +SN   ++ D                V V+Q+DG++ ++K++ E 
Sbjct: 414 LNGTVVTGFHPGLSCNSNVPSVKQDVDLENSNDKGQEMEPQVDVAQLDGREFFVKVICEY 473

[Close]

BLAST of Sed0016320 vs. ExPASy Swiss-Prot
Match: Q6YUS3 (Transcription factor TDR OS=Oryza sativa subsp. japonica OX=39947 GN=TDR PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 59/212 (27.83%), Postives = 94/212 (44.34%), Query Frame = 0


Query: 26  GHTDESTRFKSKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPRNSSNYSIHFQNMSK 85
           G +  + R + KNL AER+RRKKL+  L  LR+ VP IT                  M +
Sbjct: 274 GRSGGAKRQQCKNLEAERKRRKKLNGHLYKLRSLVPNIT-----------------KMDR 333

Query: 86  ATIIDDAITYIQQQQKTVNILKDQL----VQLEASSQKIPSP-------------TPPDS 145
           A+I+ DAI YI   QK V  L+D+L    V  +     I  P             +PP+S
Sbjct: 334 ASILGDAIDYIVGLQKQVKELQDELEDNHVHHKPPDVLIDHPPPASLVGLDNDDASPPNS 393

Query: 146 NKTY---------------------------------IQADVRVSQIDGQKLWIKILFEK 188
           ++                                   ++  + V Q+ G +L++++L+E 
Sbjct: 394 HQQQPPLAVSGSSSRRSNKDPAMTDDKVGGGGGGGHRMEPQLEVRQVQGNELFVQVLWEH 453

[Close]

BLAST of Sed0016320 vs. ExPASy Swiss-Prot
Match: B9FXT3 (Transcription factor UDT1 OS=Oryza sativa subsp. japonica OX=39947 GN=UDT1 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07
Identity = 52/160 (32.50%), Postives = 73/160 (45.62%), Query Frame = 0


Query: 34  FKSKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAI 93
           FKSKNL AERRRR +L+  +  LRA VP IT                  MSK   + DAI
Sbjct: 62  FKSKNLEAERRRRGRLNGNIFALRAVVPKIT-----------------KMSKEATLSDAI 121

Query: 94  TYIQQQQKTVNILKDQL---------VQLEASSQKIPSPTPPDSNKTYIQADVRVSQIDG 153
            +I+  Q  V  L+ QL          Q  AS  +   PT       + Q  V +  +  
Sbjct: 122 EHIKNLQNEVLELQRQLGDSPGEAWEKQCSASCSESFVPT----ENAHYQGQVELISLGS 181

Query: 154 QKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNG 185
            K  +KI + KR G FTK+++AL S   +++  +  +  G
Sbjct: 182 CKYNLKIFWTKRAGLFTKVLEALCSYKVQVLSLNTISFYG 200

[Close]

BLAST of Sed0016320 vs. ExPASy Swiss-Prot
Match: Q9LPW3 (Transcription factor SCREAM2 OS=Arabidopsis thaliana OX=3702 GN=SCRM2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-07
Identity = 48/169 (28.40%), Postives = 77/169 (45.56%), Query Frame = 0


Query: 36  SKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAITY 95
           +KNL AERRRRKKL+DRL +LR+ VP I+                  M +A+I+ DAI Y
Sbjct: 266 AKNLMAERRRRKKLNDRLYMLRSVVPKIS-----------------KMDRASILGDAIDY 325

Query: 96  IQQQQKTVNILKDQLVQLEASSQKIPSPTPPDSNKTY-----------------IQADVR 155
           +++  + +N L  +L     SS  +   TP     +Y                  Q  V 
Sbjct: 326 LKELLQRINDLHTELESTPPSSSSLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVE 385

Query: 156 VSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNGVVL 188
           V   +G+ + I +   +R G     ++AL++ G ++    ++  NG  L
Sbjct: 386 VRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFAL 417

[Close]

BLAST of Sed0016320 vs. ExPASy TrEMBL
Match: A0A6J1EVV3 (transcription factor DYT1 OS=Cucurbita moschata OX=3662 GN=LOC111436461 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 5.1e-58
Identity = 143/222 (64.41%), Postives = 158/222 (71.17%), Query Frame = 0


Query: 1   MAYAGRTPSSLRIFEEDNSRRRLTMGH--TDESTRFKSKNLNAERRRRKKLSDRLLLLRA 60
           MAYA      LR FEE    R +T     TDES  +KSKNL+AERRRR+KLSDRLLLLRA
Sbjct: 1   MAYASSGSDDLRTFEEQADTRSITNRRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRA 60

Query: 61  TVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQ 120
           TVPIIT                 NM+KATII+DAITYI+Q QK VNILKDQLV+LE S++
Sbjct: 61  TVPIIT-----------------NMNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAE 120

Query: 121 KIPSP-------TPPDSNKTYIQADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQG 180
           K P P       TP  SNK YIQADV VSQID  KLWIKILFEKRKGAFTKL+QA+NS G
Sbjct: 121 KTPWPTIPQDSTTPTQSNKGYIQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVG 180

Query: 181 FELIDTSVTTVNGVVLVTSIINGYFGTSSVQHTEDLLLRIVN 214
           FEL DTSVTTV G VLVT++ING   TS+ Q TEDLLL IVN
Sbjct: 181 FELTDTSVTTVQGAVLVTTLING-ICTSTAQQTEDLLLGIVN 204

[Close]

BLAST of Sed0016320 vs. ExPASy TrEMBL
Match: A0A6J1CZR8 (transcription factor DYT1 OS=Momordica charantia OX=3673 GN=LOC111015710 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-45
Identity = 118/201 (58.71%), Postives = 141/201 (70.15%), Query Frame = 0


Query: 1   MAYAGRTPSSLRIFEEDNSRRRL--TMGHTDESTRFKSKNLNAERRRRKKLSDRLLLLRA 60
           MA+ G  P  LR+ EE++    +      TDES ++KSKNL+AERRRR+KLSDRLLLLRA
Sbjct: 1   MAFVGFQPDELRMIEEESGSSSIKGQRRSTDESAKYKSKNLHAERRRRQKLSDRLLLLRA 60

Query: 61  TVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQ 120
           T                       M+KATII+DAITYIQQ Q+ V+ILKDQLV+LEASS+
Sbjct: 61  T-----------------------MNKATIIEDAITYIQQLQQKVDILKDQLVELEASSE 120

Query: 121 KIPSPTPPD------SNKTYIQADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGF 180
           K   PTP D        ++YIQADVRV+QID QKLW+KILFEK+KGAFTKL+Q L+S GF
Sbjct: 121 KNIWPTPRDIEAPINIKRSYIQADVRVTQIDEQKLWVKILFEKQKGAFTKLIQGLDSFGF 178

Query: 181 ELIDTSVTTVNGVVLVTSIIN 194
           ELID SVTTV G VLVT+IIN
Sbjct: 181 ELIDISVTTVKGAVLVTTIIN 178

[Close]

BLAST of Sed0016320 vs. ExPASy TrEMBL
Match: A0A6J1K1J3 (transcription factor DYT1 OS=Cucurbita maxima OX=3661 GN=LOC111490233 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.4e-42
Identity = 100/138 (72.46%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 83  MSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQKIPSP-------TPPDSNKTYIQA 142
           M+KATII+DAITYI+Q QK VNILKDQLV+LE S++K P P       TP  SNK+YIQA
Sbjct: 1   MNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQSNKSYIQA 60

Query: 143 DVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNGVVLVTSIINGY 202
           DV VSQID  KLWIKILFEKRKGAFTKL+QA+NS GFEL DTSVTTV G VLVT++ING 
Sbjct: 61  DVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLINGI 120

Query: 203 FGTSSVQHTEDLLLRIVN 214
           F TS+ Q TEDLLL IVN
Sbjct: 121 FCTSTAQQTEDLLLGIVN 138

[Close]

BLAST of Sed0016320 vs. ExPASy TrEMBL
Match: A0A7N2LV27 (BHLH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.8e-40
Identity = 107/223 (47.98%), Postives = 146/223 (65.47%), Query Frame = 0


Query: 1   MAYAGRTPSSLRIFEEDNSRRRLTMGH--TDESTRFKSKNLNAERRRRKKLSDRLLLLRA 60
           M Y G     L I +E NSR R+       D+ T +KSKNL+AERRRR+KLSDRLL LRA
Sbjct: 1   MEYVGSALDGLFITKEGNSRGRVGRRRYSNDDGTEYKSKNLHAERRRRQKLSDRLLALRA 60

Query: 61  TVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQ 120
            VPIIT                 NM+KATII+DAI+YI++ +  VN+L+  L ++EASS+
Sbjct: 61  LVPIIT-----------------NMNKATIIEDAISYIEELKNNVNVLQGLLYEMEASSE 120

Query: 121 KIPSP------TPPDSNKTYIQADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGF 180
           +   P         +  K+ IQA+V V+QIDG+KLWIKI+F K++G FT+L++A+ + GF
Sbjct: 121 EGALPRSEEIDPAEEMRKSGIQAEVEVTQIDGKKLWIKIIFGKKRGGFTRLIEAMTAFGF 180

Query: 181 ELIDTSVTTVNGVVLVTSIINGYFG-TSSVQHTEDLLLRIVNG 215
           EL DTSVTT  G +LV+S + G  G  + VQ T++LLL+I+NG
Sbjct: 181 ELTDTSVTTSKGAMLVSSCVKGIHGEINEVQRTKELLLQIING 206

[Close]

BLAST of Sed0016320 vs. ExPASy TrEMBL
Match: A0A4Y1R9X2 (Basic helix-loop-helix DNA-binding superfamily protein (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_010868 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.4e-39
Identity = 102/197 (51.78%), Postives = 137/197 (69.54%), Query Frame = 0


Query: 25  MGHTDEST--RFKSKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPRNSSNYSIHFQN 84
           MGH   +    +KSKNL+AERRRR+KLS+RLL LRA VP ITNA+ L      +  H   
Sbjct: 24  MGHRSHNNDDEYKSKNLHAERRRRQKLSERLLTLRALVPNITNASIL------FISH--Q 83

Query: 85  MSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQKIPSP------TPPDSNKTYIQAD 144
           M+KATI++DAITYI + QKTVNILKDQL  +EAS ++ P P      +  +  K  IQA 
Sbjct: 84  MNKATIVEDAITYIHELQKTVNILKDQLFDMEASEEEAPEPKKEEIHSAEEMKKFGIQAG 143

Query: 145 VRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNGVVLVTSIINGYF 204
           V V+QIDG KLW+K + EK++G FTKL++A+ + GFEL DTSVTT NG +LV+S + G++
Sbjct: 144 VNVTQIDGNKLWVKAILEKKRGGFTKLMEAMTAFGFELTDTSVTTSNGAMLVSSCVMGFY 203

Query: 205 -GTSSVQHTEDLLLRIV 213
             T  V+ T++L+L I+
Sbjct: 204 CETLEVEQTKELMLEII 212

[Close]

BLAST of Sed0016320 vs. TAIR 10
Match: AT4G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 2.8e-24
Identity = 75/208 (36.06%), Postives = 113/208 (54.33%), Query Frame = 0


Query: 19  SRRRLTMGHTDESTRFKSKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPRNSSNYSI 78
           SRR+      +E   FKS NL AERRRR+KL  RL+ LR+ VPI+T              
Sbjct: 14  SRRKQVTKEKEEDENFKSPNLEAERRRREKLHCRLMALRSHVPIVT-------------- 73

Query: 79  HFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQKI----------PSPTPPDS 138
              NM+KA+I++DAITYI + Q  V  L +   ++E +  +I          P     D 
Sbjct: 74  ---NMTKASIVEDAITYIGELQNNVKNLLETFHEMEEAPPEIDEEQTDPMIKPEVETSDL 133

Query: 139 N----KTYIQADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNG 198
           N    K  I+ +V++ +I  +K W+KI+ EKR G FTK ++ +   GFE+ID S+TT NG
Sbjct: 134 NEEMKKLGIEENVQLCKIGERKFWLKIITEKRDGIFTKFMEVMRFLGFEIIDISLTTSNG 193

Query: 199 VVLVTSIINGYFGTSSVQHTEDLLLRIV 213
            +L+++ +        V+ T+D LL ++
Sbjct: 194 AILISASVQTQ-ELCDVEQTKDFLLEVM 203

[Close]

BLAST of Sed0016320 vs. TAIR 10
Match: AT2G16910.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 6.1e-11
Identity = 61/216 (28.24%), Postives = 103/216 (47.69%), Query Frame = 0


Query: 12  RIFEEDNSRRRLTMGHTDESTRFKSKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPR 71
           +I +ED+ + +   G   +     +KNL AERRRRKKL+DRL  LR+ VP IT       
Sbjct: 294 QIDDEDDPKYKKKSGKGSQ-----AKNLMAERRRRKKLNDRLYALRSLVPRIT------- 353

Query: 72  NSSNYSIHFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEASSQKIPSPTPP----- 131
                      + +A+I+ DAI Y+++ Q     L+D   +LE +S+       P     
Sbjct: 354 ----------KLDRASILGDAINYVKELQNEAKELQD---ELEENSETEDGSNRPQGGMS 413

Query: 132 ---------------DSNKTYIQAD----------------VRVSQIDGQKLWIKILFEK 191
                          +SN   ++ D                V V+Q+DG++ ++K++ E 
Sbjct: 414 LNGTVVTGFHPGLSCNSNVPSVKQDVDLENSNDKGQEMEPQVDVAQLDGREFFVKVICEY 473

[Close]

BLAST of Sed0016320 vs. TAIR 10
Match: AT1G12860.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-08
Identity = 48/169 (28.40%), Postives = 77/169 (45.56%), Query Frame = 0


Query: 36  SKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAITY 95
           +KNL AERRRRKKL+DRL +LR+ VP I+                  M +A+I+ DAI Y
Sbjct: 266 AKNLMAERRRRKKLNDRLYMLRSVVPKIS-----------------KMDRASILGDAIDY 325

Query: 96  IQQQQKTVNILKDQLVQLEASSQKIPSPTPPDSNKTY-----------------IQADVR 155
           +++  + +N L  +L     SS  +   TP     +Y                  Q  V 
Sbjct: 326 LKELLQRINDLHTELESTPPSSSSLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVE 385

Query: 156 VSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNGVVL 188
           V   +G+ + I +   +R G     ++AL++ G ++    ++  NG  L
Sbjct: 386 VRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFAL 417

[Close]

BLAST of Sed0016320 vs. TAIR 10
Match: AT2G28160.1 (FER-like regulator of iron uptake )

HSP 1 Score: 51.6 bits (122), Expect = 9.1e-07
Identity = 48/170 (28.24%), Postives = 77/170 (45.29%), Query Frame = 0


Query: 16  EDNSRRRLTMGHTDESTRFKSKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPRNSSN 75
           +D+S        T ++   +S+ L +ERRRR ++ D+L  LR+ VP IT           
Sbjct: 110 DDSSATTTNNDGTRKTKTDRSRTLISERRRRGRMKDKLYALRSLVPNIT----------- 169

Query: 76  YSIHFQNMSKATIIDDAITYIQQQQKTVNILKDQLVQLEAS----------------SQK 135
                  M KA+I+ DA+ Y+Q+ Q     LK  +  LEAS                +Q 
Sbjct: 170 ------KMDKASIVGDAVLYVQELQSQAKKLKSDIAGLEASLNSTGGYQEHAPDAQKTQP 229

Query: 136 IPSPTPPDSNKTYIQADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNS 170
                PP S K  IQ D  V Q++ +  +++++  K +G    L ++L S
Sbjct: 230 FRGINPPASKK-IIQMD--VIQVEEKGFYVRLVCNKGEGVAPSLYKSLES 259

[Close]

BLAST of Sed0016320 vs. TAIR 10
Match: AT3G26744.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 9.1e-07
Identity = 51/173 (29.48%), Postives = 83/173 (47.98%), Query Frame = 0


Query: 36  SKNLNAERRRRKKLSDRLLLLRATVPIITNATSLPRNSSNYSIHFQNMSKATIIDDAITY 95
           +KNL AERRRRKKL+DRL +LR+ VP I+                  M +A+I+ DAI Y
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKIS-----------------KMDRASILGDAIDY 365

Query: 96  IQQQQKTVNILKDQL-------VQLEASSQKIPSPTP------------PDS--NKTYIQ 155
           +++  + +N L ++L       +   +SS    +PTP            P S  +    Q
Sbjct: 366 LKELLQRINDLHNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQ 425

Query: 156 ADVRVSQIDGQKLWIKILFEKRKGAFTKLVQALNSQGFELIDTSVTTVNGVVL 188
           A V V   +G+ + I +   +R G     ++AL++ G ++    ++  NG  L
Sbjct: 426 ARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFAL 461

The following BLAST results are available for this feature:

BLAST of Sed0016320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930020.1	1.1e-57	64.41	transcription factor DYT1 [Cucurbita moschata]	[more]
XP_022146507.1	2.7e-45	58.71	transcription factor DYT1, partial [Momordica charantia]	[more]
KAG6601683.1	2.8e-42	72.46	Transcription factor DYT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022994545.1	2.8e-42	72.46	transcription factor DYT1 [Cucurbita maxima]	[more]
XP_023876547.1	9.0e-41	49.33	transcription factor DYT1-like [Quercus suber]	[more]

BLAST of Sed0016320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81900	4.0e-23	36.06	Transcription factor DYT1 OS=Arabidopsis thaliana OX=3702 GN=DYT1 PE=2 SV=1	[more]
Q9ZVX2	8.6e-10	28.24	Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana OX=3702 GN=AMS ...	[more]
Q6YUS3	3.3e-09	27.83	Transcription factor TDR OS=Oryza sativa subsp. japonica OX=39947 GN=TDR PE=1 SV...	[more]
B9FXT3	1.4e-07	32.50	Transcription factor UDT1 OS=Oryza sativa subsp. japonica OX=39947 GN=UDT1 PE=2 ...	[more]
Q9LPW3	4.0e-07	28.40	Transcription factor SCREAM2 OS=Arabidopsis thaliana OX=3702 GN=SCRM2 PE=1 SV=1	[more]

BLAST of Sed0016320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVV3	5.1e-58	64.41	transcription factor DYT1 OS=Cucurbita moschata OX=3662 GN=LOC111436461 PE=4 SV=...	[more]
A0A6J1CZR8	1.3e-45	58.71	transcription factor DYT1 OS=Momordica charantia OX=3673 GN=LOC111015710 PE=4 SV...	[more]
A0A6J1K1J3	1.4e-42	72.46	transcription factor DYT1 OS=Cucurbita maxima OX=3661 GN=LOC111490233 PE=4 SV=1	[more]
A0A7N2LV27	2.8e-40	47.98	BHLH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A4Y1R9X2	2.4e-39	51.78	Basic helix-loop-helix DNA-binding superfamily protein (Fragment) OS=Prunus dulc...	[more]

BLAST of Sed0016320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21330.1	2.8e-24	36.06	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G16910.1	6.1e-11	28.24	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G12860.1	2.8e-08	28.40	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G28160.1	9.1e-07	28.24	FER-like regulator of iron uptake	[more]
AT3G26744.1	9.1e-07	29.48	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..116
None	No IPR available	PANTHER	PTHR31945:SF20	TRANSCRIPTION FACTOR DYT1	coord: 26..213
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 26..213
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 39..105 e-value: 2.9E-6 score: 36.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 40..100 e-value: 9.2E-8 score: 32.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 33..99 score: 12.690293
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 26..116 e-value: 2.1E-12 score: 48.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 31..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016320.1	Sed0016320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity