Sed0016307 (gene) Chayote v1

Overview


Name	Sed0016307
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG09: 26655399 .. 26656932 (+)
RNA-Seq Expression	Sed0016307
Synteny	Sed0016307

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAAGGAAGAAACACTACCTCGAAGGTGCTTGCTCCAAGAAACTACACTGGACCTATCACGCGTAGTCGTTCCAAGTCCGTCGAGAGCAATGAACCTCAAGTAACACCAGGTGCGATCGCAAAACGAATTGCAGGACTACTAGAGGGGACCTCTGATGAAATCGTCGTCAAAGATAACCCATTATTTGACCAAGTCAGTCCTAGCGTTGATCAACCAAAGGAGACATCTAATCCTGATGTGATGTCTGTAATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAGAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTACCTCAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAGTCCACATGAGAGAGTCAATGATAAAGGAAAGAACCCTCTCCTTGAGGCACAACCACAACTGCACTCAGCCTCAGTCGCTCCTTGTCTGCATTCAATGTACCTACATGACCCGATCACGAACACTATTAGAGCTCAAGGTGGTGGGCTAGTTCAAAGTTCTCTCTTGTACTCCAGGCCATACACAAAGAGAATAGACAACTTAAGAATGCCTGCAGGATACCAACCGCCTAAGTTTCAGCAGTTTGATGGAAAAGGCAACCCCAAACAGCATGTTGCTCATTTCGTAGAGACTTGTGAAACCGCTGGAACTCGAGGAGACCTTCTCTCGTCAGTGCAGTTTGTCCGAACGTTAAAGGGAATGCGTCGATGGTATATCGATCTTGAAGTGAAACGATAGATAGCCGGGAAGAGTTGGAGAGAGAGTTCTTAATCGGTTCTATAGCACGAGCAATTTGTCAAGATGATAGAATTAACAAATGCGAAGCAGCGGAAGGGCGAGCCTGTCGTCGACTATATTAACCGTTGGCGAGCTCTAAGTCTGGACTGCAAAGACCGCCTCACTGAAACGTCCGCGATCGACATCTGTATCCAGGGCATGCATCGGGACTTCAGACATCCCGAAGGGAATCAAGCCTCGCACCTTTGAGGAGTTGGCCACCCGAGCTCATGATATGGAGCTGAGCATTGACGCAAAGGGAAACAAAGATTCTCTAGTCTTAGAAACCCGTAAAGAAAAGAAGGATTTCAAGCCCACAGAAAAAGTTACAAAAAATGTGGCAAAGGAGACAATGACCATCGGTGCAGCTCCATTAAAGTTTTCCTCAAAAGCAAAGGGAACAAAAGCTGAGAAACGACCAGTTATGGAGCAACGACGTCGCCTAACACTTCAGGAAAGACAAGAAAAAGTCTATCCATTTCCGGACTCCGATATAGCTGACATGTTAGAGCAACTGCTGGAAGCAAAACTCATCCAGTTGCCCGAATGCAAGCGTCCCGAGGAGTTAGGCAAGGTAAATGATCCTAACTACTGTAAATACCATCGCGTTGTCAGCCATCCTATCGAGAAATGCTTCGTCTTGAAAGAGTTGATTCTGAGGTTGGCTAGAGAAAAAAAGATTGAGTGGACTTAG

mRNA sequence

ATGATCAAAGGAAGAAACACTACCTCGAAGGTGCTTGCTCCAAGAAACTACACTGGACCTATCACGCTTATGGAGCAACGACGTCGCCTAACACTTCAGGAAAGACAAGAAAAAGTCTATCCATTTCCGGACTCCGATATAGCTGACATGTTAGAGCAACTGCTGGAAGCAAAACTCATCCAGTTGCCCGAATGCAAGCGTCCCGAGGAGTTAGGCAAGGTAAATGATCCTAACTACTGTAAATACCATCGCGTTGTCAGCCATCCTATCGAGAAATGCTTCGTCTTGAAAGAGTTGATTCTGAGGTTGGCTAGAGAAAAAAAGATTGAGTGGACTTAG

Coding sequence (CDS)

ATGATCAAAGGAAGAAACACTACCTCGAAGGTGCTTGCTCCAAGAAACTACACTGGACCTATCACGCTTATGGAGCAACGACGTCGCCTAACACTTCAGGAAAGACAAGAAAAAGTCTATCCATTTCCGGACTCCGATATAGCTGACATGTTAGAGCAACTGCTGGAAGCAAAACTCATCCAGTTGCCCGAATGCAAGCGTCCCGAGGAGTTAGGCAAGGTAAATGATCCTAACTACTGTAAATACCATCGCGTTGTCAGCCATCCTATCGAGAAATGCTTCGTCTTGAAAGAGTTGATTCTGAGGTTGGCTAGAGAAAAAAAGATTGAGTGGACTTAG

Protein sequence

MIKGRNTTSKVLAPRNYTGPITLMEQRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRVVSHPIEKCFVLKELILRLAREKKIEWT

Homology

[Close]

BLAST of Sed0016307 vs. NCBI nr
Match: KAA0062536.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 76/85 (89.41%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 26  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRV 85
           +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV
Sbjct: 65  ERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRV 124

Query: 86  VSHPIEKCFVLKELILRLAREKKIE 111
           +SHP+EKCFVLKELILRLAREKKIE
Sbjct: 125 ISHPVEKCFVLKELILRLAREKKIE 149

[Close]

BLAST of Sed0016307 vs. NCBI nr
Match: KAA0055958.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 76/85 (89.41%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 26  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRV 85
           +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV
Sbjct: 65  ERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRV 124

Query: 86  VSHPIEKCFVLKELILRLAREKKIE 111
           +SHP+EKCFVLKELILRLAREKKIE
Sbjct: 125 ISHPVEKCFVLKELILRLAREKKIE 149

[Close]

BLAST of Sed0016307 vs. NCBI nr
Match: XP_031742390.1 (uncharacterized protein LOC116401672 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 6.0e-36
Identity = 75/85 (88.24%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 26  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRV 85
           +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV
Sbjct: 222 ERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRV 281

Query: 86  VSHPIEKCFVLKELILRLAREKKIE 111
           +SHP+EKCFVLKELILRLAREK+IE
Sbjct: 282 ISHPVEKCFVLKELILRLAREKRIE 306

[Close]

BLAST of Sed0016307 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 6.0e-36
Identity = 75/85 (88.24%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 26  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRV 85
           +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV
Sbjct: 423 ERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRV 482

Query: 86  VSHPIEKCFVLKELILRLAREKKIE 111
           +SHP+EKCFVLKELILRLAREK+IE
Sbjct: 483 ISHPVEKCFVLKELILRLAREKRIE 507

[Close]

BLAST of Sed0016307 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 6.0e-36
Identity = 75/85 (88.24%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 26  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRV 85
           +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV
Sbjct: 423 ERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRV 482

Query: 86  VSHPIEKCFVLKELILRLAREKKIE 111
           +SHP+EKCFVLKELILRLAREK+IE
Sbjct: 483 ISHPVEKCFVLKELILRLAREKRIE 507

[Close]

BLAST of Sed0016307 vs. ExPASy TrEMBL
Match: A0A5A7V7Z6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00070 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 76/85 (89.41%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 26  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRV 85
           +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV
Sbjct: 65  ERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRV 124

Query: 86  VSHPIEKCFVLKELILRLAREKKIE 111
           +SHP+EKCFVLKELILRLAREKKIE
Sbjct: 125 ISHPVEKCFVLKELILRLAREKKIE 149

[Close]

BLAST of Sed0016307 vs. ExPASy TrEMBL
Match: A0A5A7ULK6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00840 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 76/85 (89.41%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 26  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRV 85
           +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV
Sbjct: 65  ERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRV 124

Query: 86  VSHPIEKCFVLKELILRLAREKKIE 111
           +SHP+EKCFVLKELILRLAREKKIE
Sbjct: 125 ISHPVEKCFVLKELILRLAREKKIE 149

[Close]

BLAST of Sed0016307 vs. ExPASy TrEMBL
Match: A0A5A7STD3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00030 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 74/85 (87.06%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 26  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRV 85
           +RRRLTL+ERQEKVYPFPDSDIADMLEQLLE +LIQLP+CKRPE+ GKV+DPNYCKYH+V
Sbjct: 317 ERRRLTLKERQEKVYPFPDSDIADMLEQLLEKQLIQLPKCKRPEQAGKVDDPNYCKYHQV 376

Query: 86  VSHPIEKCFVLKELILRLAREKKIE 111
           +SHP+EKCFVLKELILRLAREKKIE
Sbjct: 377 ISHPVEKCFVLKELILRLAREKKIE 401

[Close]

BLAST of Sed0016307 vs. ExPASy TrEMBL
Match: A0A5D3DWV0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00770 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 75/85 (88.24%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 26  QRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHRV 85
           +RRRLTL+ERQEKVYPFP SDIADMLEQLLE +LIQLPECKRPE+ GKV+DPNYCKYHRV
Sbjct: 96  ERRRLTLKERQEKVYPFPYSDIADMLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRV 155

Query: 86  VSHPIEKCFVLKELILRLAREKKIE 111
           +SHP+EKCFVLKELILRLAREKKIE
Sbjct: 156 ISHPVEKCFVLKELILRLAREKKIE 180

[Close]

BLAST of Sed0016307 vs. ExPASy TrEMBL
Match: A0A5A7V3R7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G003520 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.1e-35
Identity = 71/86 (82.56%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 25  EQRRRLTLQERQEKVYPFPDSDIADMLEQLLEAKLIQLPECKRPEELGKVNDPNYCKYHR 84
           +++R+ TL+ERQEKVYPFPDSD+ADMLEQLLE +LIQLPECKRPE++GKV+DPNYCKYHR
Sbjct: 423 DKKRQSTLKERQEKVYPFPDSDVADMLEQLLENQLIQLPECKRPEQVGKVDDPNYCKYHR 482

Query: 85  VVSHPIEKCFVLKELILRLAREKKIE 111
           V+SHP+EKCFVLKELIL+LAREKKIE
Sbjct: 483 VISHPVEKCFVLKELILKLAREKKIE 508

The following BLAST results are available for this feature:

BLAST of Sed0016307 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062536.1	2.7e-36	89.41	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055958.1	2.7e-36	89.41	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
XP_031742390.1	6.0e-36	88.24	uncharacterized protein LOC116401672 [Cucumis sativus]	[more]
XP_031739134.1	6.0e-36	88.24	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	6.0e-36	88.24	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]

BLAST of Sed0016307 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0016307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7Z6	1.3e-36	89.41	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7ULK6	1.3e-36	89.41	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7STD3	1.1e-35	87.06	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DWV0	1.4e-35	88.24	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V3R7	7.1e-35	82.56	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Sed0016307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016307.1	Sed0016307.1	mRNA