Sed0016301 (gene) Chayote v1

Overview


Name	Sed0016301
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Wound-responsive family protein
Location	LG08: 36526028 .. 36526240 (-)
RNA-Seq Expression	Sed0016301
Synteny	Sed0016301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCGTAGATCATACAAGGGGGAGATGAAAGATCAGACGGTGAAGCGTGAGCCGATGATGATGGTGATGAGGGACCGTTCCGGATCGGCGAACCAGGGCAGGGGATTTTACAGCGCCATGGATTCGAGTGCGGCTAAGGCCGAGAAGCTCAAACGGGCTGAGGAATCGCTCAGAACTGTTATGTATTTGAGCTGTTGGGGCCCTAACTAA

mRNA sequence

ATGAGCCGTAGATCATACAAGGGGGAGATGAAAGATCAGACGGTGAAGCGTGAGCCGATGATGATGGTGATGAGGGACCGTTCCGGATCGGCGAACCAGGGCAGGGGATTTTACAGCGCCATGGATTCGAGTGCGGCTAAGGCCGAGAAGCTCAAACGGGCTGAGGAATCGCTCAGAACTGTTATGTATTTGAGCTGTTGGGGCCCTAACTAA

Coding sequence (CDS)

ATGAGCCGTAGATCATACAAGGGGGAGATGAAAGATCAGACGGTGAAGCGTGAGCCGATGATGATGGTGATGAGGGACCGTTCCGGATCGGCGAACCAGGGCAGGGGATTTTACAGCGCCATGGATTCGAGTGCGGCTAAGGCCGAGAAGCTCAAACGGGCTGAGGAATCGCTCAGAACTGTTATGTATTTGAGCTGTTGGGGCCCTAACTAA

Protein sequence

MSRRSYKGEMKDQTVKREPMMMVMRDRSGSANQGRGFYSAMDSSAAKAEKLKRAEESLRTVMYLSCWGPN

Homology

[Close]

BLAST of Sed0016301 vs. NCBI nr
Match: KAG7019649.1 (hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.8 bits (247), Expect = 1.0e-17
Identity = 59/78 (75.64%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MSRRSYKGE---MKDQTVKREPMMMVMRDRSG-SANQG-RGFYSAMDSS---AAKAEKLK 60
          MSRR YKGE   MKD T KRE M+  +RD SG S+NQG RGFYS MDSS   AAKAEKLK
Sbjct: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60

Query: 61 RAEESLRTVMYLSCWGPN 71
          RAEESLRTVMYLSCWGPN
Sbjct: 61 RAEESLRTVMYLSCWGPN 78

[Close]

BLAST of Sed0016301 vs. NCBI nr
Match: KAG6573231.1 (hypothetical protein SDJN03_27118, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012404.1 hypothetical protein SDJN02_25156, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 8   GEMKDQTVKREPMMMVMRDRSGSANQGRGFYSAMDS---SAAKAEKLKRAEESLRTVMYL 67
           G M DQ  +REP    +RD SGS++Q  GF SA+ S    AAKAEK+KRAEESLRTVMYL
Sbjct: 64  GGMNDQRAEREPAAKGLRDPSGSSSQTTGFCSAVGSIAAMAAKAEKVKRAEESLRTVMYL 123

Query: 68  SCWGPN 71
           SCWGPN
Sbjct: 124 SCWGPN 129

[Close]

BLAST of Sed0016301 vs. NCBI nr
Match: KAG6584036.1 (hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 48/67 (71.64%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1  MSRRSYKGE---MKDQTVKREPMMMVMRDRSG-SANQG-RGFYSAMDSS---AAKAEKLK 60
          MSRR YKGE   MKD T KRE M+  +RD SG S+NQG RGFYS MDSS   AAKAEKLK
Sbjct: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60

[Close]

BLAST of Sed0016301 vs. NCBI nr
Match: AAO12870.1 (wound induced protein-like, partial [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 7.3e-08
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 10 MKDQTVKREPMMMVMRD---RSGSANQGRGFYSAMDSSAAKA-----EKLKRAEESLRTV 69
          MKDQ  K +P +  +RD    S S+ Q R F  A+DS+A KA     E+LK++EESLRTV
Sbjct: 3  MKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRTV 62

Query: 70 MYLSCWGPN 71
          MYLSCWGPN
Sbjct: 63 MYLSCWGPN 71

[Close]

BLAST of Sed0016301 vs. NCBI nr
Match: RVX08573.1 (hypothetical protein CK203_014292 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 7.3e-08
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 10 MKDQTVKREPMMMVMRD---RSGSANQGRGFYSAMDSSAAKA-----EKLKRAEESLRTV 69
          MKDQ  K +P +  +RD    S S+ Q R F  A+DS+A KA     E+LK++EESLRTV
Sbjct: 7  MKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRTV 66

Query: 70 MYLSCWGPN 71
          MYLSCWGPN
Sbjct: 67 MYLSCWGPN 75

[Close]

BLAST of Sed0016301 vs. ExPASy TrEMBL
Match: Q6YCG3 (Wound induced protein-like (Fragment) OS=Vitis vinifera OX=29760 GN=WIP PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.5e-08
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 10 MKDQTVKREPMMMVMRD---RSGSANQGRGFYSAMDSSAAKA-----EKLKRAEESLRTV 69
          MKDQ  K +P +  +RD    S S+ Q R F  A+DS+A KA     E+LK++EESLRTV
Sbjct: 3  MKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRTV 62

Query: 70 MYLSCWGPN 71
          MYLSCWGPN
Sbjct: 63 MYLSCWGPN 71

[Close]

BLAST of Sed0016301 vs. ExPASy TrEMBL
Match: A0A438EF66 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_075930 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.5e-08
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 10 MKDQTVKREPMMMVMRD---RSGSANQGRGFYSAMDSSAAKA-----EKLKRAEESLRTV 69
          MKDQ  K +P +  +RD    S S+ Q R F  A+DS+A KA     E+LK++EESLRTV
Sbjct: 21 MKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRTV 80

Query: 70 MYLSCWGPN 71
          MYLSCWGPN
Sbjct: 81 MYLSCWGPN 89

[Close]

BLAST of Sed0016301 vs. ExPASy TrEMBL
Match: A0A438JHZ4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014292 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.5e-08
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 10 MKDQTVKREPMMMVMRD---RSGSANQGRGFYSAMDSSAAKA-----EKLKRAEESLRTV 69
          MKDQ  K +P +  +RD    S S+ Q R F  A+DS+A KA     E+LK++EESLRTV
Sbjct: 7  MKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRTV 66

Query: 70 MYLSCWGPN 71
          MYLSCWGPN
Sbjct: 67 MYLSCWGPN 75

[Close]

BLAST of Sed0016301 vs. ExPASy TrEMBL
Match: A0A022QKW0 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a018114mg PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1  MSRRSYKGEM------KDQTVKREPMMMVMRDR---SGSANQGRGFYSAMDSSAAKAEKL 60
          MSR +Y+  M      KD   KR+  +  ++D    S S+ Q R   +A++S+  KA+KL
Sbjct: 1  MSRVAYQAGMRVMQGIKDPASKRDTNIKTLKDSYAYSSSSRQARKLSAAIESTGLKADKL 60

Query: 61 KRAEESLRTVMYLSCWGPN 71
          K+AEESLRTVMYLSCWGPN
Sbjct: 61 KQAEESLRTVMYLSCWGPN 79

[Close]

BLAST of Sed0016301 vs. ExPASy TrEMBL
Match: A0A7N2LSL0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 10 MKDQTVKREPMMMVMRD---RSGSANQGRGFYSAMDSSAAKA---EKLKRAEESLRTVMY 69
          MKDQ  K +  +  +RD    S S+ Q R F +A DS+A KA   EK+K+AEESLRTVMY
Sbjct: 16 MKDQASKCDSTVNSLRDSAYSSSSSKQARLFSTACDSAAYKAANSEKIKQAEESLRTVMY 75

Query: 70 LSCWGPN 71
          LSCWGPN
Sbjct: 76 LSCWGPN 82

[Close]

BLAST of Sed0016301 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-08
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 24 MRDRSGSANQGRGF----YSAMDSSAAKAEKLKRAEESLRTVMYLSCWGPN 71
          +R+   S +QG+ F     SA  +S+ ++EK K+AEESLRTVMYLSCWGPN
Sbjct: 40 LRNNVRSVSQGKRFSSSSVSAAVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Sed0016301 vs. TAIR 10
Match: AT4G05070.1 (Wound-responsive family protein )

HSP 1 Score: 43.9 bits (102), Expect = 6.2e-05
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 28 SGSANQGRGFYSAMDSSAAKAEKLKRAEESLRTVMYLSCWG 69
          S S  + +G   +    AA +E+L++AEESLRTVM+LSCWG
Sbjct: 45 SSSVRRLKGDLESSRFGAAASERLRQAEESLRTVMFLSCWG 85

[Close]

BLAST of Sed0016301 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 43.9 bits (102), Expect = 6.2e-05
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 24 MRDRSGSANQGRGFYSAMDSSAAKAEKLKRAEESLRTVMYLSCWGPN 71
          +R+   S +Q +   S   SS     K K+AEESLRTVMYLSCWGP+
Sbjct: 40 LRNNLRSVSQAKKLSS---SSIDYTNKTKQAEESLRTVMYLSCWGPS 83

The following BLAST results are available for this feature:

BLAST of Sed0016301 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019649.1	1.0e-17	75.64	hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573231.1	1.4e-11	65.15	hypothetical protein SDJN03_27118, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6584036.1	1.7e-09	71.64	hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sorori...	[more]
AAO12870.1	7.3e-08	55.07	wound induced protein-like, partial [Vitis vinifera]	[more]
RVX08573.1	7.3e-08	55.07	hypothetical protein CK203_014292 [Vitis vinifera]	[more]

BLAST of Sed0016301 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0016301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q6YCG3	3.5e-08	55.07	Wound induced protein-like (Fragment) OS=Vitis vinifera OX=29760 GN=WIP PE=2 SV=...	[more]
A0A438EF66	3.5e-08	55.07	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_075930 PE=4 SV=1	[more]
A0A438JHZ4	3.5e-08	55.07	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014292 PE=4 SV=1	[more]
A0A022QKW0	1.0e-07	48.10	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a018114mg PE...	[more]
A0A7N2LSL0	3.0e-07	56.72	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Sed0016301 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10270.1	3.5e-08	54.90	Wound-responsive family protein	[more]
AT4G05070.1	6.2e-05	51.22	Wound-responsive family protein	[more]
AT4G10265.1	6.2e-05	51.06	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 29..69 e-value: 3.7E-12 score: 47.1
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 9..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR33090:SF41	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 9..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016301.1	Sed0016301.1	mRNA