Sed0016230 (gene) Chayote v1

Overview


Name	Sed0016230
Type	gene
Organism	Sechium edule (Chayote v1)
Description	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
Location	Contig00347: 824 .. 1842 (+)
RNA-Seq Expression	Sed0016230
Synteny	Sed0016230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGGCTCCTTCTTTAGTAAGATTATATGAGCAAATGCCTGAACCAAAATATGTTATTGCTATGGGAGCCTGTACAATTACAGGAGGGATGTTCAGTACCGATTCTTATAGTACTGTTCGGGGAGTCGATAAGTTAATTCCTGTCGATGTGTATTTGCCGGGGTGTCCACCTAAACCCGAGGCTGTTATAGATGCTATAACAAAACTTCGTAAGAAAATCTCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGAGAATCGGTGTTTTACTACCAACCATAAATTTCATGTTGGCCCAAGTACTCATACTGGAAATTACGATCAAGGATTACTCTATCAACCATCATCTACTTCAGAGATCATCCTCCTGAAACTTTTTTTCAAATACAAAAGTTCAGTATCTTCCTACGAATTAGTGAAGTAGACAGTATACTTTTGTACAGAATAACAAAGAACGAGTGAATCTTGATAAATTTTGCATTGTAAATGAGAAATACTTATACAAAAAAATAAAAAAATGGGGGATAAAAGATGCAGGGTCGTTTGTCTTCGTGGCTCGTCAAACATGGACTGGTTCATAGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCTGAGGAGTGGCATTCCATTGCAGTCATTTTATATGTATATGGTTACACTTATCTACGTTCCCAATGTGCTTATGATGTAGCCCCCGGCGGACTGTTAGCTAGTGTGTATCATCTTACGAGAATCGAGTATGGTATAGATCAACCGGAAGAGGTATGCATAAAAGTATTTGCCCCAAGGATAAATCCTAGAATTCCGTCTGTTTTCTGGGTTTGGAAAAGTGCGGATTTTCCAGAAAGGGAATCTTATGATATGTTGGGAATTTATTATGATAATCATCCACGTCTAAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGGCCCTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTCATTAA

mRNA sequence

ATGAAAATGGCTCCTTCTTTAGTAAGATTATATGAGCAAATGCCTGAACCAAAATATGTTATTGCTATGGGAGCCTGTACAATTACAGGAGGGATGTTCAGTACCGATTCTTATAGTACTGTTCGGGGAGTCGATAAGTTAATTCCTGTCGATGTGTATTTGCCGGGGTGTCCACCTAAACCCGAGGCTGTTATAGATGCTATAACAAAACTTCGTAAGAAAATCTCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGAGAATCGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCTGAGGAGTGGCATTCCATTGCAGTCATTTTATATGTATATGGTTACACTTATCTACGTTCCCAATGTGCTTATGATGTAGCCCCCGGCGGACTGTTAGCTAGTGTGTATCATCTTACGAGAATCGAGTATGGTATAGATCAACCGGAAGAGGTATGCATAAAAGTATTTGCCCCAAGGATAAATCCTAGAATTCCGTCTGTTTTCTGGGTTTGGAAAAGTGCGGATTTTCCAGAAAGGGAATCTTATGATATGTTGGGAATTTATTATGATAATCATCCACGTCTAAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGGCCCTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTCATTAA

Coding sequence (CDS)

ATGAAAATGGCTCCTTCTTTAGTAAGATTATATGAGCAAATGCCTGAACCAAAATATGTTATTGCTATGGGAGCCTGTACAATTACAGGAGGGATGTTCAGTACCGATTCTTATAGTACTGTTCGGGGAGTCGATAAGTTAATTCCTGTCGATGTGTATTTGCCGGGGTGTCCACCTAAACCCGAGGCTGTTATAGATGCTATAACAAAACTTCGTAAGAAAATCTCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGAGAATCGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCTGAGGAGTGGCATTCCATTGCAGTCATTTTATATGTATATGGTTACACTTATCTACGTTCCCAATGTGCTTATGATGTAGCCCCCGGCGGACTGTTAGCTAGTGTGTATCATCTTACGAGAATCGAGTATGGTATAGATCAACCGGAAGAGGTATGCATAAAAGTATTTGCCCCAAGGATAAATCCTAGAATTCCGTCTGTTTTCTGGGTTTGGAAAAGTGCGGATTTTCCAGAAAGGGAATCTTATGATATGTTGGGAATTTATTATGATAATCATCCACGTCTAAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGGCCCTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTCATTAA

Protein sequence

MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

Homology

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BLAST of Sed0016230 vs. NCBI nr
Match: ERN02874.1 (hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda])

HSP 1 Score: 442.6 bits (1137), Expect = 2.1e-120
Identity = 217/267 (81.27%), Postives = 222/267 (83.15%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 84  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 143

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENRSLG-------------------------- 120
           PEAVIDAITKLRKKISREIYEDRI+SQ+ENR                             
Sbjct: 144 PEAVIDAITKLRKKISREIYEDRIRSQQENRCFTTSHKFRVKRSTHTGSYNQGLLYQPPS 203

Query: 121 ---------FDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHL 180
                    F Y+ IETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHL
Sbjct: 204 TSEIPTERFFKYKRIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHL 263

Query: 181 TRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRI 233
           TRIEY IDQPEEVCIKVF PR NPRIPSVFWVWKSADF ERESYDMLGIYYDNHPRLKRI
Sbjct: 264 TRIEYAIDQPEEVCIKVFVPRRNPRIPSVFWVWKSADFQERESYDMLGIYYDNHPRLKRI 323

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BLAST of Sed0016230 vs. NCBI nr
Match: RYR42400.1 (hypothetical protein Ahy_A08g038873 [Arachis hypogaea])

HSP 1 Score: 442.2 bits (1136), Expect = 2.8e-120
Identity = 210/232 (90.52%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 83  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 142

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENRSLGFDYQGIETLQIKPEEWHSIAVILYVY 120
           PEA+IDAITKLRKKISREI ED I      RSLGFDYQGIETLQIKPE+WHSIAVILYVY
Sbjct: 143 PEAIIDAITKLRKKISREIDEDHI------RSLGFDYQGIETLQIKPEDWHSIAVILYVY 202

Query: 121 GYTYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKS 180
           GY YLRSQCAYDVAPGGLLASVYHLTRIE GIDQPEEVCIKV+ PR NPRIPS+FWVWKS
Sbjct: 203 GYNYLRSQCAYDVAPGGLLASVYHLTRIESGIDQPEEVCIKVYVPRKNPRIPSIFWVWKS 262

Query: 181 ADFPERESYDMLGIYYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH 233
           ADF ERESYDMLGI Y+NHPRLKRILMPE+W+GWPLRKDYIAPNFYEIQDA+
Sbjct: 263 ADFQERESYDMLGISYENHPRLKRILMPENWIGWPLRKDYIAPNFYEIQDAY 308

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BLAST of Sed0016230 vs. NCBI nr
Match: KAB2044903.1 (hypothetical protein ES319_D01G123100v1 [Gossypium barbadense])

HSP 1 Score: 439.5 bits (1129), Expect = 1.8e-119
Identity = 214/267 (80.15%), Postives = 224/267 (83.90%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 83  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 142

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENRSLG-------------------------- 120
           PEAVIDAITKLRKKISREIYEDRI+SQ+ +R                             
Sbjct: 143 PEAVIDAITKLRKKISREIYEDRIRSQQGDRCFTTNHKFCLVRSTRTGNYNQGLLYQPPS 202

Query: 121 ---------FDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHL 180
                    F+Y+GIETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHL
Sbjct: 203 TSEIPPETFFNYKGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHL 262

Query: 181 TRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRI 233
           TRIEYG+DQPEEVCIKVFAPR NPRIPSVFWVWKS+DF ERESYDMLGI Y+NHPRLKRI
Sbjct: 263 TRIEYGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSSDFQERESYDMLGISYENHPRLKRI 322

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BLAST of Sed0016230 vs. NCBI nr
Match: TYH12546.1 (hypothetical protein ES288_A06G076300v1, partial [Gossypium darwinii])

HSP 1 Score: 439.5 bits (1129), Expect = 1.8e-119
Identity = 214/267 (80.15%), Postives = 224/267 (83.90%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 22  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 81

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENRSLG-------------------------- 120
           PEAVIDAITKLRKKISREIYEDRI+SQ+ +R                             
Sbjct: 82  PEAVIDAITKLRKKISREIYEDRIRSQQGDRCFTTNHKFYLVRSTRTGNYNQGLLYQPPS 141

Query: 121 ---------FDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHL 180
                    F+Y+GIETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHL
Sbjct: 142 TSEIPPETFFNYKGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHL 201

Query: 181 TRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRI 233
           TRIEYG+DQPEEVCIKVFAPR NPRIPSVFWVWKS+DF ERESYDMLGI Y+NHPRLKRI
Sbjct: 202 TRIEYGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSSDFQERESYDMLGISYENHPRLKRI 261

[Close]

BLAST of Sed0016230 vs. NCBI nr
Match: TYH02279.1 (hypothetical protein ES288_A09G127400v1 [Gossypium darwinii])

HSP 1 Score: 435.6 bits (1119), Expect = 2.6e-118
Identity = 212/267 (79.40%), Postives = 223/267 (83.52%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 83  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 142

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENRSLG-------------------------- 120
           PEAVIDAITKLRKKIS EI+EDRI+SQ+ +R                             
Sbjct: 143 PEAVIDAITKLRKKISHEIHEDRIRSQQGDRCFTTNHKFCLVRSTRTGNYNQGLLYQPPS 202

Query: 121 ---------FDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHL 180
                    F+Y+GIETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHL
Sbjct: 203 TSEIPPETFFNYKGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHL 262

Query: 181 TRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRI 233
           TRIEYG+DQPEEVCIKVFAPR NPRIPSVFWVWKS+DF ERESYDMLGI Y+NHPRLKRI
Sbjct: 263 TRIEYGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSSDFQERESYDMLGISYENHPRLKRI 322

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BLAST of Sed0016230 vs. ExPASy Swiss-Prot
Match: Q4VZH2 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.4e-82
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 90  NRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHLTRIE 149
           +RSLGFDYQGIETLQIKPEEWHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHLTRIE
Sbjct: 16  HRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIE 75

Query: 150 YGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRILMPE 209
           YGIDQPEEVCIKVFA RINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRILMPE
Sbjct: 76  YGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRILMPE 135

Query: 210 SWVGWPLRKDYIAPNFYEIQDAH 233
           SWVGWPLRKDYIAPNFYEIQDAH
Sbjct: 136 SWVGWPLRKDYIAPNFYEIQDAH 158

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BLAST of Sed0016230 vs. ExPASy Swiss-Prot
Match: B1A938 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Carica papaya OX=3649 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.9e-80
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 90  NRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHLTRIE 149
           +RSLGFDYQGIETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHLTRIE
Sbjct: 16  HRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIE 75

Query: 150 YGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRILMPE 209
           YG+DQPEEVCIKVFAPR NPRIPSVFWVWKSADF ERESYDMLGI YDNHPRLKRILMPE
Sbjct: 76  YGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPE 135

Query: 210 SWVGWPLRKDYIAPNFYEIQDAH 233
           SW+GWPLRKDYIAPNFYEIQDAH
Sbjct: 136 SWIGWPLRKDYIAPNFYEIQDAH 158

[Close]

BLAST of Sed0016230 vs. ExPASy Swiss-Prot
Match: B1NWF3 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Manihot esculenta OX=3983 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.8e-80
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 90  NRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHLTRIE 149
           +R LGFDYQGIETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHLTRIE
Sbjct: 16  HRFLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIE 75

Query: 150 YGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRILMPE 209
           YGIDQPEEVCIKVFAPR NPRIPSVFWVWKSADF ERESYDMLGI+YDNHPRLKRILMPE
Sbjct: 76  YGIDQPEEVCIKVFAPRKNPRIPSVFWVWKSADFQERESYDMLGIFYDNHPRLKRILMPE 135

Query: 210 SWVGWPLRKDYIAPNFYEIQDAH 233
           SW+GWPLRKDYIAPNFYEIQDAH
Sbjct: 136 SWIGWPLRKDYIAPNFYEIQDAH 158

[Close]

BLAST of Sed0016230 vs. ExPASy Swiss-Prot
Match: A1XGP1 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Ranunculus macranthus OX=334596 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.1e-79
Identity = 133/143 (93.01%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 90  NRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHLTRIE 149
           +RSLGFDYQGIETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHLTRI+
Sbjct: 16  HRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQ 75

Query: 150 YGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRILMPE 209
           YG+DQPEEVCIKVFAPR NPRIPSVFW+WKSADF ERESYDMLGI YDNHPRLKRILMPE
Sbjct: 76  YGVDQPEEVCIKVFAPRRNPRIPSVFWIWKSADFQERESYDMLGISYDNHPRLKRILMPE 135

Query: 210 SWVGWPLRKDYIAPNFYEIQDAH 233
           SW+GWPLRKDYIAPNFYEIQDAH
Sbjct: 136 SWIGWPLRKDYIAPNFYEIQDAH 158

[Close]

BLAST of Sed0016230 vs. ExPASy Swiss-Prot
Match: B0Z4L4 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Oenothera argillicola OX=3940 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-79
Identity = 135/143 (94.41%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 90  NRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHLTRIE 149
           +RSLGFDYQGIETLQIKPEEWHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHLTRIE
Sbjct: 16  HRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIE 75

Query: 150 YGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRILMPE 209
           YG+DQ EEVCIKVFAPR NPRIPSVFWVWKSADF ERESYDMLGI YDNHPRLKRILMPE
Sbjct: 76  YGVDQAEEVCIKVFAPRNNPRIPSVFWVWKSADFQERESYDMLGIRYDNHPRLKRILMPE 135

Query: 210 SWVGWPLRKDYIAPNFYEIQDAH 233
           SW+GWPLRKDYIAPNFYEIQDAH
Sbjct: 136 SWIGWPLRKDYIAPNFYEIQDAH 158

[Close]

BLAST of Sed0016230 vs. ExPASy TrEMBL
Match: W1P5D9 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00334p00014280 PE=3 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 1.0e-120
Identity = 217/267 (81.27%), Postives = 222/267 (83.15%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 84  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 143

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENRSLG-------------------------- 120
           PEAVIDAITKLRKKISREIYEDRI+SQ+ENR                             
Sbjct: 144 PEAVIDAITKLRKKISREIYEDRIRSQQENRCFTTSHKFRVKRSTHTGSYNQGLLYQPPS 203

Query: 121 ---------FDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHL 180
                    F Y+ IETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHL
Sbjct: 204 TSEIPTERFFKYKRIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHL 263

Query: 181 TRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRI 233
           TRIEY IDQPEEVCIKVF PR NPRIPSVFWVWKSADF ERESYDMLGIYYDNHPRLKRI
Sbjct: 264 TRIEYAIDQPEEVCIKVFVPRRNPRIPSVFWVWKSADFQERESYDMLGIYYDNHPRLKRI 323

[Close]

BLAST of Sed0016230 vs. ExPASy TrEMBL
Match: A0A445BUL8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g038873 PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.3e-120
Identity = 210/232 (90.52%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 83  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 142

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENRSLGFDYQGIETLQIKPEEWHSIAVILYVY 120
           PEA+IDAITKLRKKISREI ED I      RSLGFDYQGIETLQIKPE+WHSIAVILYVY
Sbjct: 143 PEAIIDAITKLRKKISREIDEDHI------RSLGFDYQGIETLQIKPEDWHSIAVILYVY 202

Query: 121 GYTYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKS 180
           GY YLRSQCAYDVAPGGLLASVYHLTRIE GIDQPEEVCIKV+ PR NPRIPS+FWVWKS
Sbjct: 203 GYNYLRSQCAYDVAPGGLLASVYHLTRIESGIDQPEEVCIKVYVPRKNPRIPSIFWVWKS 262

Query: 181 ADFPERESYDMLGIYYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH 233
           ADF ERESYDMLGI Y+NHPRLKRILMPE+W+GWPLRKDYIAPNFYEIQDA+
Sbjct: 263 ADFQERESYDMLGISYENHPRLKRILMPENWIGWPLRKDYIAPNFYEIQDAY 308

[Close]

BLAST of Sed0016230 vs. ExPASy TrEMBL
Match: A0A5J5SN67 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D01G123100v1 PE=3 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 8.7e-120
Identity = 214/267 (80.15%), Postives = 224/267 (83.90%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 83  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 142

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENRSLG-------------------------- 120
           PEAVIDAITKLRKKISREIYEDRI+SQ+ +R                             
Sbjct: 143 PEAVIDAITKLRKKISREIYEDRIRSQQGDRCFTTNHKFCLVRSTRTGNYNQGLLYQPPS 202

Query: 121 ---------FDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHL 180
                    F+Y+GIETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHL
Sbjct: 203 TSEIPPETFFNYKGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHL 262

Query: 181 TRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRI 233
           TRIEYG+DQPEEVCIKVFAPR NPRIPSVFWVWKS+DF ERESYDMLGI Y+NHPRLKRI
Sbjct: 263 TRIEYGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSSDFQERESYDMLGISYENHPRLKRI 322

[Close]

BLAST of Sed0016230 vs. ExPASy TrEMBL
Match: A0A5D2G518 (Uncharacterized protein (Fragment) OS=Gossypium darwinii OX=34276 GN=ES288_A06G076300v1 PE=3 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 8.7e-120
Identity = 214/267 (80.15%), Postives = 224/267 (83.90%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 22  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 81

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENRSLG-------------------------- 120
           PEAVIDAITKLRKKISREIYEDRI+SQ+ +R                             
Sbjct: 82  PEAVIDAITKLRKKISREIYEDRIRSQQGDRCFTTNHKFYLVRSTRTGNYNQGLLYQPPS 141

Query: 121 ---------FDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHL 180
                    F+Y+GIETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHL
Sbjct: 142 TSEIPPETFFNYKGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHL 201

Query: 181 TRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRI 233
           TRIEYG+DQPEEVCIKVFAPR NPRIPSVFWVWKS+DF ERESYDMLGI Y+NHPRLKRI
Sbjct: 202 TRIEYGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSSDFQERESYDMLGISYENHPRLKRI 261

[Close]

BLAST of Sed0016230 vs. ExPASy TrEMBL
Match: A0A5D2FCK6 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A09G127400v1 PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.3e-118
Identity = 212/267 (79.40%), Postives = 223/267 (83.52%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 83  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 142

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENRSLG-------------------------- 120
           PEAVIDAITKLRKKIS EI+EDRI+SQ+ +R                             
Sbjct: 143 PEAVIDAITKLRKKISHEIHEDRIRSQQGDRCFTTNHKFCLVRSTRTGNYNQGLLYQPPS 202

Query: 121 ---------FDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHL 180
                    F+Y+GIETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHL
Sbjct: 203 TSEIPPETFFNYKGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHL 262

Query: 181 TRIEYGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRI 233
           TRIEYG+DQPEEVCIKVFAPR NPRIPSVFWVWKS+DF ERESYDMLGI Y+NHPRLKRI
Sbjct: 263 TRIEYGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSSDFQERESYDMLGISYENHPRLKRI 322

[Close]

BLAST of Sed0016230 vs. TAIR 10
Match: ATCG00420.1 (NADH dehydrogenase subunit J )

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-76
Identity = 128/143 (89.51%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 90  NRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYTYLRSQCAYDVAPGGLLASVYHLTRIE 149
           +RSLGFDYQGIETLQIKPE+WHSIAVILYVYGY YLRSQCAYDVAPGGLLASVYHLTRIE
Sbjct: 16  HRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIE 75

Query: 150 YGIDQPEEVCIKVFAPRINPRIPSVFWVWKSADFPERESYDMLGIYYDNHPRLKRILMPE 209
           YG++Q EEVCIKVF  R NPRIPSVFWVWKS DF ERESYDMLGI YD+HPRLKRILMPE
Sbjct: 76  YGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPE 135

Query: 210 SWVGWPLRKDYIAPNFYEIQDAH 233
           SW+GWPLRKDYIAPNFYEIQDA+
Sbjct: 136 SWIGWPLRKDYIAPNFYEIQDAY 158

[Close]

BLAST of Sed0016230 vs. TAIR 10
Match: ATCG00430.1 (photosystem II reaction center protein G )

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-43
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1   MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 60
           MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK
Sbjct: 83  MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 142

Query: 61  PEAVIDAITKLRKKISREIYEDRIKSQEENR 92
           PEAVIDAITKLRKKI+REIY+DRI+ Q+ NR
Sbjct: 143 PEAVIDAITKLRKKIAREIYKDRIRPQQGNR 173

[Close]

BLAST of Sed0016230 vs. TAIR 10
Match: AT5G11770.1 (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial )

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-19
Identity = 41/76 (53.95%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 2   KMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKP 61
           KMAP+L ++Y+QMPEP++VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  
Sbjct: 134 KMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTA 193

Query: 62  EAVIDAITKLRKKISR 78
           EA++  + +L+KKI+R
Sbjct: 194 EALLYGLLQLQKKINR 208

[Close]

BLAST of Sed0016230 vs. TAIR 10
Match: ATMG00070.1 (NADH dehydrogenase subunit 9 )

HSP 1 Score: 49.7 bits (117), Expect = 3.7e-06
Identity = 33/114 (28.95%), Postives = 53/114 (46.49%), Query Frame = 0


Query: 122 YTYLRSQCAYDV------APGGLLASVYHLTRIEYGIDQPEEVCIKVFAPRINPRIPSVF 181
           +TY R Q + D+      +       VY+L    Y       + ++  A  +  RI  V 
Sbjct: 48  HTYTRVQVSIDICGVDHPSRKRRFEVVYNLLSTRYN----SRIRVQTSADEVT-RISPVV 107

Query: 182 WVWKSADFPERESYDMLGIYYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQ 230
            ++ SA   ERE +DM G+ + NHP L+RI     + G PLRKD     + +++
Sbjct: 108 SLFPSAGRWEREVWDMFGVSFINHPDLRRISTDYGFEGHPLRKDLPLSGYVQVR 156

The following BLAST results are available for this feature:

BLAST of Sed0016230 vs. NCBI nr


Match Name	E-value	Identity	Description
ERN02874.1	2.1e-120	81.27	hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]	[more]
RYR42400.1	2.8e-120	90.52	hypothetical protein Ahy_A08g038873 [Arachis hypogaea]	[more]
KAB2044903.1	1.8e-119	80.15	hypothetical protein ES319_D01G123100v1 [Gossypium barbadense]	[more]
TYH12546.1	1.8e-119	80.15	hypothetical protein ES288_A06G076300v1, partial [Gossypium darwinii]	[more]
TYH02279.1	2.6e-118	79.40	hypothetical protein ES288_A09G127400v1 [Gossypium darwinii]	[more]

BLAST of Sed0016230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH2	1.4e-82	97.90	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Cucumis sativus OX=36...	[more]
B1A938	2.9e-80	94.41	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Carica papaya OX=3649...	[more]
B1NWF3	3.8e-80	94.41	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Manihot esculenta OX=...	[more]
A1XGP1	1.1e-79	93.01	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Ranunculus macranthus...	[more]
B0Z4L4	1.4e-79	94.41	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Oenothera argillicola...	[more]

BLAST of Sed0016230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W1P5D9	1.0e-120	81.27	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00334p00014280...	[more]
A0A445BUL8	1.3e-120	90.52	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g038873 PE=3 SV=1	[more]
A0A5J5SN67	8.7e-120	80.15	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D01G123100v1 PE...	[more]
A0A5D2G518	8.7e-120	80.15	Uncharacterized protein (Fragment) OS=Gossypium darwinii OX=34276 GN=ES288_A06G0...	[more]
A0A5D2FCK6	1.3e-118	79.40	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A09G127400v1 PE=...	[more]

BLAST of Sed0016230 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00420.1	1.2e-76	89.51	NADH dehydrogenase subunit J	[more]
ATCG00430.1	1.0e-43	93.41	photosystem II reaction center protein G	[more]
AT5G11770.1	1.7e-19	53.95	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	[more]
ATMG00070.1	3.7e-06	28.95	NADH dehydrogenase subunit 9	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001268	NADH:ubiquinone oxidoreductase, 30kDa subunit	PFAM	PF00329	Complex1_30kDa	coord: 104..222 e-value: 9.4E-32 score: 110.2
None	No IPR available	GENE3D	3.40.50.12280		coord: 1..78 e-value: 8.1E-35 score: 121.4
None	No IPR available	PANTHER	PTHR10884:SF18	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT J, CHLOROPLASTIC	coord: 127..232
None	No IPR available	PANTHER	PTHR10884	NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3	coord: 127..232
None	No IPR available	SUPERFAMILY	56770	HydA/Nqo6-like	coord: 1..84
IPR037232	NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily	GENE3D	3.30.460.80	NADH:ubiquinone oxidoreductase, 30kDa subunit	coord: 79..204 e-value: 9.6E-24 score: 86.3
IPR037232	NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily	SUPERFAMILY	143243	Nqo5-like	coord: 93..227
IPR006137	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	PFAM	PF01058	Oxidored_q6	coord: 3..71 e-value: 7.1E-19 score: 68.0
IPR020396	NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site	PROSITE	PS00542	COMPLEX1_30K	coord: 185..206
IPR006138	NADH-ubiquinone oxidoreductase, 20 Kd subunit	PROSITE	PS01150	COMPLEX1_20K	coord: 43..59
IPR010218	NADH dehydrogenase, subunit C	HAMAP	MF_01357	NDH1_NuoC	coord: 71..232 score: 25.384663

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016230.1	Sed0016230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015990	electron transport coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H