Sed0016187 (gene) Chayote v1

Overview


Name	Sed0016187
Type	gene
Organism	Sechium edule (Chayote v1)
Description	GPI ethanolamine phosphate transferase 3
Location	LG08: 38558901 .. 38561712 (-)
RNA-Seq Expression	Sed0016187
Synteny	Sed0016187

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAATGCAATCTGTTATGGCCGCTCTGTGCTTTAATGGCGGTTCGTCAATGGATTTCTTCTTTCTCGCACCGAGCTTTCTTATTTCAGTCACTGCTCCGATCTTCCTCATTCTCCCCGTTTCAGTTCCGATTCACTTTCCGACTGCAATCCGGTCGGCTGATCCGTCCGATTAAGCGAATTCCAGCCGTTGCTGAACCAAGTCCGCCGTTAATCGCATCGGCATCATTGTTCTTGATTCTCTACGTTTTTCTCCTTTCCTCTTTCTTTCTCATCGCTTACAATTCATTGACTATGGCTACGACTGGTTCTTTAATCTTTGCTTGTTTTAGTTCGTATCAATTTGCATATCAGGTCTGATTTCGTTGCTCCCAGTACATTCTTCGAAGGTCACCTCTCTTGTTTTGCTTGTTTAGAATGTAATTAGTTCTTGGTTAGTGGAGTATTAAGTTTACATCAGTAGGTTTCATATCTTCCTATTTTATAATTGGTTTGAGTTATTATATTTAGTATTTAGTTGTCATAATAGTTAGCTCAGTTAGATTTTATAGTTTCTTTTCTATGCATAAATATCCGTTAGAAATAAATTGTCTGAGTTTTTACTCTTCCAAAATCAATAATGTGTCGTATTGTTTGTTGTGTGCGTGGTTTTTTTTTTCCTTTCTAATTCGTAGGTTTTGTTCTAGTCCTCATTGGTCGAGACTTGGGGGTCTCAGGTACGAGCCCACGAGTAATATTGTTGTTTCTTGAGACGGTGCCAGTGCGAGTGCTCCCAAGAGCGAAACTCTGATTTAGTGGTTTTTAAAAACAATAAACAAATCATAGTTTGTATTCTGAAATCTATGACTTATGGTACTTGTGATGGGTGGGCTACTTTTATATTGTTATTTGTTAGCTCCCGTTGAAAGTGATGTGGTTTTTGCCATATGATCCGTGATTCAAGATTAAGACTGATTATTCATATGTTTGTGCCCTAGAATCAAAACCATGGATGGATAAGTTACGAGTACCACATAATATGGCATCATGAAGTTTATGACTCGTTTGATAACTATTTGCTTTTTGAAATTTACACTTATTTTTATTCAAATTTCCTACAGTTCCATCTTTCCTACAATGTATCTATCTTTCCTTAAGAAAGTAGGTGAATGCTAACCAAATTTCAAAAATAAGTTTTTGGGAGCTACTTTTTTTTGTTTCCAAATTTTGGTTTAGTTTCTAAAAATATAGGTAAGATGTAGATATCCAAATAAAAAAAAACATATGGTTAAGTAGTTGTTATAGACTTAGATTTCAAAAATCAAAACTAAAAACTAAAATAGTTATCAAACGGGGCCTTAACTCTTAGCTTTTCATGGTGACTTCGAGCGGCTGATGCTATACTTTCCCAGAAATCGACCATAACTTATTGTTCAAGAATGCATACATGTAGGCCACGTTAAAACTTTGGCTTCCTCTGTGATTATACTATAAGCTGTTTTTGCTTCTAATTGGTTTGCATGGTAAACGTATTTAGTGAAATTACTTTATTTAGCCTTTCTGTTTTGTTGACTGGCTTGGCAATATTGCTGCGATTTCTTCCCTTATCGCTCCCTTCTTTTATGGGATGGCGTTATCACCTCGTAGCAGTGATTTTTTTTTTTTGTATGTTTTCAGGGCATTACGACTGGTGGACTGCCAGCATTTATTGATGTTGGAAACAGTTTTGCTGCTCCAGCAATTATTGAAGACAACTTAGATTCATGAGGTTGAAGCTTGCATCTCTACTATTGCTATAGTATAGATGCTGGCTAAGCATTATCGCTTCTTTAATATCACGTTAAATTATATTAAACCACCTATTAACCTAAATGCTTAAATTAATGGACTGGGGTAAATTTAATTATATCAATCTGACATTTTTTTTGTCTGAACTTATTTTAGGTGACTGCAGATACTTTTTCTTGCATTAGAAATATCTTGTTTCTAACCCAGTTTTCAGTAGTCATTTAAATCCTCATGGATTGTCTTAGTGGTCAAAGAGAGATTTGGGGATCGAAAAGTTTATGAATTTAATTGATGGTATCTTTATCTTTTTAGGAATTAATTTCCTATGAGTTTGTTCTACAACTAATTATTGTAAGGGTAAACCATCTCTCCCGTGAGAATATTTGAAGTCCATGTAAGCTATGGTCCGAACACTCACGATCACAGATATAAAAAGAAGTAATTCTTTAGTCTGAAACTTTGAACTAACATTCACTCACGTTATACTTTGCTGCTTTAAATTCGCTCAGTCCCCTCCATTTTTACTCCTTAGTTTGGTTGATAACACTTTTTCTTGTTCTTTTAGATTAATATTCACGTGATAGAGGCACTTTTTAAATTCTTTAACACTTGAAGTCCTAATCTAATCTCAGGTTCGACGAGTTTGTTCTAGTTCGCCAAGAAATCCTTCTCACAATTGATACATTTGGCTTCTCTATCATCCTTTCATTGTTGCAAATAAATACTCATCTAGTCAGGCTTCAAAAGGGGAAAACAATCTCTTCATGCGCTTATATCAAGTAAGTTATTTTATTTGTTGACCCTTCAGTGCTGAAGAAAAGAAACTTTGTTGAATTGCAACATGATCTCAACATTTGATTTTTTTATTTTCCTTGGCATCCTTTAGGCTTATTTGATGTCTGGGCTCATAATAGCGGTTCCTGTTACAGCCATATTGTGTGTCATAATTCAAAGCCGGCATTCGATGGTAATTACCTTAGGCCCCATTTGATAACCATTTGGTTTTTTAAATTTAAGCTTATTTTACTCAAATTTCTTCCCA

mRNA sequence

ATGAGGAAATGCAATCTGTTATGGCCGCTCTGTGCTTTAATGGCGGTTCGTCAATGGATTTCTTCTTTCTCGCACCGAGCTTTCTTATTTCAGTCACTGCTCCGATCTTCCTCATTCTCCCCGTTTCAGTTCCGATTCACTTTCCGACTGCAATCCGGTCGGCTGATCCGTCCGATTAAGCGAATTCCAGCCGTTGCTGAACCAAGTCCGCCGTTAATCGCATCGGCATCATTGTTCTTGATTCTCTACGTTTTTCTCCTTTCCTCTTTCTTTCTCATCGCTTACAATTCATTGACTATGGCTACGACTGGTTCTTTAATCTTTGCTTGTTTTAGTTCGTATCAATTTGCATATCAGGGCATTACGACTGGTGGACTGCCAGCATTTATTGATGTTGGAAACAGTTTTGCTGCTCCAGCAATTATTGAAGACAACTTAGATTCATGAGGTTCGACGAGTTTGTTCTAGTTCGCCAAGAAATCCTTCTCACAATTGATACATTTGGCTTCTCTATCATCCTTTCATTGTTGCAAATAAATACTCATCTAGTCAGGCTTCAAAAGGGGAAAACAATCTCTTCATGCGCTTATATCAAGCTTATTTGATGTCTGGGCTCATAATAGCGGTTCCTGTTACAGCCATATTGTGTGTCATAATTCAAAGCCGGCATTCGATGGTAATTACCTTAGGCCCCATTTGATAACCATTTGGTTTTTTAAATTTAAGCTTATTTTACTCAAATTTCTTCCCA

Coding sequence (CDS)

ATGAGGAAATGCAATCTGTTATGGCCGCTCTGTGCTTTAATGGCGGTTCGTCAATGGATTTCTTCTTTCTCGCACCGAGCTTTCTTATTTCAGTCACTGCTCCGATCTTCCTCATTCTCCCCGTTTCAGTTCCGATTCACTTTCCGACTGCAATCCGGTCGGCTGATCCGTCCGATTAAGCGAATTCCAGCCGTTGCTGAACCAAGTCCGCCGTTAATCGCATCGGCATCATTGTTCTTGATTCTCTACGTTTTTCTCCTTTCCTCTTTCTTTCTCATCGCTTACAATTCATTGACTATGGCTACGACTGGTTCTTTAATCTTTGCTTGTTTTAGTTCGTATCAATTTGCATATCAGGGCATTACGACTGGTGGACTGCCAGCATTTATTGATGTTGGAAACAGTTTTGCTGCTCCAGCAATTATTGAAGACAACTTAGATTCATGA

Protein sequence

MRKCNLLWPLCALMAVRQWISSFSHRAFLFQSLLRSSSFSPFQFRFTFRLQSGRLIRPIKRIPAVAEPSPPLIASASLFLILYVFLLSSFFLIAYNSLTMATTGSLIFACFSSYQFAYQGITTGGLPAFIDVGNSFAAPAIIEDNLDS

Homology

[Close]

BLAST of Sed0016187 vs. NCBI nr
Match: XP_038894123.1 (GPI ethanolamine phosphate transferase 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-04
Identity = 52/151 (34.44%), Postives = 67/151 (44.37%), Query Frame = 0


Query: 50  LQSGRLIRPIKRIPAVAEPSPPLIASASLFLILYVFLLSSFFLIAYNSLTMATTG----S 109
           LQ G L+  +++IPAVA PSPPL AS+S F +LY FL   F L+++  L          S
Sbjct: 44  LQFGLLL--MQQIPAVAGPSPPLTASSSSFSMLYGFL--RFPLVSHPLLLFIDYDLIHLS 103

Query: 110 LIFACFSSYQFAY----------------------------------------------- 147
           L+  C++     +                                               
Sbjct: 104 LLALCYTYLYIRFDFVAPSTFFEESKPWMDKLQVLHKMASERGSSTKIFKAIADPPTTSL 163

[Close]

BLAST of Sed0016187 vs. NCBI nr
Match: XP_038894122.1 (GPI ethanolamine phosphate transferase 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-04
Identity = 52/151 (34.44%), Postives = 67/151 (44.37%), Query Frame = 0


Query: 50  LQSGRLIRPIKRIPAVAEPSPPLIASASLFLILYVFLLSSFFLIAYNSLTMATTG----S 109
           LQ G L+  +++IPAVA PSPPL AS+S F +LY FL   F L+++  L          S
Sbjct: 44  LQFGLLL--MQQIPAVAGPSPPLTASSSSFSMLYGFL--RFPLVSHPLLLFIDYDLIHLS 103

Query: 110 LIFACFSSYQFAY----------------------------------------------- 147
           L+  C++     +                                               
Sbjct: 104 LLALCYTYLYIRFDFVAPSTFFEESKPWMDKLQVLHKMASERGSSTKIFKAIADPPTTSL 163

[Close]

BLAST of Sed0016187 vs. NCBI nr
Match: THG12079.1 (hypothetical protein TEA_027171 [Camellia sinensis var. sinensis])

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-04
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 111 FSSYQFAYQGITTGGLPAFIDVGNSFAAPAIIEDNL 147
           F  Y+    G+TTGGLP FIDVGNSF APAI+EDNL
Sbjct: 90  FCEYEEEVDGLTTGGLPTFIDVGNSFGAPAIVEDNL 125

[Close]

BLAST of Sed0016187 vs. NCBI nr
Match: XP_038894125.1 (GPI ethanolamine phosphate transferase 3 isoform X4 [Benincasa hispida] >XP_038894126.1 GPI ethanolamine phosphate transferase 3 isoform X4 [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-04
Identity = 52/151 (34.44%), Postives = 67/151 (44.37%), Query Frame = 0


Query: 50  LQSGRLIRPIKRIPAVAEPSPPLIASASLFLILYVFLLSSFFLIAYNSLTMATTG----S 109
           LQ G L+  +++IPAVA PSPPL AS+S F +LY FL   F L+++  L          S
Sbjct: 44  LQFGLLL--MQQIPAVAGPSPPLTASSSSFSMLYGFL--RFPLVSHPLLLFIDYDLIHLS 103

Query: 110 LIFACFSSYQFAY----------------------------------------------- 147
           L+  C++     +                                               
Sbjct: 104 LLALCYTYLYIRFDFVAPSTFFEESKPWMDKLQVLHKMASERGSSTKIFKAIADPPTTSL 163

[Close]

BLAST of Sed0016187 vs. NCBI nr
Match: RVW94105.1 (GPI ethanolamine phosphate transferase 3 [Vitis vinifera])

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-04
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 118 YQGITTGGLPAFIDVGNSFAAPAIIEDNL 147
           +QG+TTGGLP FIDVGNSF APAI+EDNL
Sbjct: 219 FQGLTTGGLPTFIDVGNSFGAPAIVEDNL 247

[Close]

BLAST of Sed0016187 vs. ExPASy TrEMBL
Match: A0A438IBM9 (GPI ethanolamine phosphate transferase 3 OS=Vitis vinifera OX=29760 GN=PIGO PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 118 YQGITTGGLPAFIDVGNSFAAPAIIEDNL 147
           +QG+TTGGLP FIDVGNSF APAI+EDNL
Sbjct: 219 FQGLTTGGLPTFIDVGNSFGAPAIVEDNL 247

[Close]

BLAST of Sed0016187 vs. ExPASy TrEMBL
Match: A0A4S4E7P4 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_027171 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 111 FSSYQFAYQGITTGGLPAFIDVGNSFAAPAIIEDNL 147
           F  Y+    G+TTGGLP FIDVGNSF APAI+EDNL
Sbjct: 90  FCEYEEEVDGLTTGGLPTFIDVGNSFGAPAIVEDNL 125

[Close]

BLAST of Sed0016187 vs. ExPASy TrEMBL
Match: W9SPQ3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001472 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-04
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 118 YQGITTGGLPAFIDVGNSFAAPAIIEDNL 147
           +QGITTGGLP FIDVGNSF APAI EDNL
Sbjct: 15  FQGITTGGLPTFIDVGNSFGAPAITEDNL 43

[Close]

BLAST of Sed0016187 vs. ExPASy TrEMBL
Match: A0A6J1K260 (GPI ethanolamine phosphate transferase 3 OS=Cucurbita maxima OX=3661 GN=LOC111490372 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 119 QGITTGGLPAFIDVGNSFAAPAIIEDNL 147
           +GITTGGLP FIDVGNSF APAIIEDNL
Sbjct: 144 KGITTGGLPTFIDVGNSFGAPAIIEDNL 171

[Close]

BLAST of Sed0016187 vs. ExPASy TrEMBL
Match: A0A0A0LYK9 (GPI ethanolamine phosphate transferase 3 OS=Cucumis sativus OX=3659 GN=Csa_1G538790 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 119 QGITTGGLPAFIDVGNSFAAPAIIEDNL 147
           +GITTGGLP FIDVGNSF APAIIEDNL
Sbjct: 144 KGITTGGLPTFIDVGNSFGAPAIIEDNL 171

[Close]

BLAST of Sed0016187 vs. TAIR 10
Match: AT5G17250.1 (Alkaline-phosphatase-like family protein )

HSP 1 Score: 51.6 bits (122), Expect = 6.3e-07
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 119 QGITTGGLPAFIDVGNSFAAPAIIEDN 146
           +G+TTGGLP FID+GNSF APAI+EDN
Sbjct: 143 KGLTTGGLPTFIDIGNSFGAPAIVEDN 169

The following BLAST results are available for this feature:

BLAST of Sed0016187 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894123.1	2.7e-04	34.44	GPI ethanolamine phosphate transferase 3 isoform X2 [Benincasa hispida]	[more]
XP_038894122.1	2.7e-04	34.44	GPI ethanolamine phosphate transferase 3 isoform X1 [Benincasa hispida]	[more]
THG12079.1	2.7e-04	69.44	hypothetical protein TEA_027171 [Camellia sinensis var. sinensis]	[more]
XP_038894125.1	2.7e-04	34.44	GPI ethanolamine phosphate transferase 3 isoform X4 [Benincasa hispida] >XP_0388...	[more]
RVW94105.1	2.7e-04	82.76	GPI ethanolamine phosphate transferase 3 [Vitis vinifera]	[more]

BLAST of Sed0016187 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0016187 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438IBM9	1.3e-04	82.76	GPI ethanolamine phosphate transferase 3 OS=Vitis vinifera OX=29760 GN=PIGO PE=3...	[more]
A0A4S4E7P4	1.3e-04	69.44	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0271...	[more]
W9SPQ3	2.3e-04	86.21	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001472 PE=4 SV=1	[more]
A0A6J1K260	3.8e-04	89.29	GPI ethanolamine phosphate transferase 3 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A0A0LYK9	3.8e-04	89.29	GPI ethanolamine phosphate transferase 3 OS=Cucumis sativus OX=3659 GN=Csa_1G538...	[more]

BLAST of Sed0016187 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17250.1	6.3e-07	77.78	Alkaline-phosphatase-like family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016187.1	Sed0016187.1	mRNA
Sed0016187.2	Sed0016187.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity