Sed0016172 (gene) Chayote v1

Overview
NameSed0016172
Typegene
OrganismSechium edule (Chayote v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
LocationLG05: 45762982 .. 45768039 (-)
RNA-Seq ExpressionSed0016172
SyntenySed0016172
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGGGTAGGCCCACACAGCTTCTCTGTGTGTTTTTCAGTTCATTAGTCTCTCGTTTTGCCTCATTTCTCTCTTTCTTGGTTGCTTTTTCAATCATCCAAACAAATTTCGGAAGGTTTTGAGATCAATCTCATGGAGGATCGCAAGGAGGTAATTCTTCGACTCTTACTTGTACTTTCTCTGATTTTAGGTTTCTCTGTTACGCCAAAAATGGCGGAAGTTAACGACAACGATGTTCATATCTTGTTCTTGTTGCTTTTTCTTGACTAGGAAGATTAAGAAAAAACTTAGAATATTTGATGAACTGAGTTTATTATGATTGACGCTTTAGTTGTCCACTTCACTTCGCTCTTGTTTATTCGAAATTCATTGAAGATTCTGTATATTTTAATCATTTTGATGCACTTTCTAGAAATCTGAACTGAATTTTCGATGATTTTGTATCGGTATGCGTAGAATGATTGAACTCTTTGCGAAGTTTATTGTGTTCTCTGTTTTACCTTCGAATTTCCAAAATTCGATGTTGAATTTTCCATTTCCCCCAAATGCTTTATTGAAGTTTTTCGGTTTCTTTTTTCTGCTTCGATTTCTTGACTTTCAAGTTTTTATTAGTTTCTTCTATGATCTGCTTGATTAATTTCAGAGGATATTCAGTTCTCTCACATCGAAATTGACGGATTCTGGATTCCAATTAATTGTTGGCATCTGTATTTACAGCATTTCATTATTAGTTTATCCCAAAAGGATCTTATCTGTAAAAGAGGGGCACTGTTCTCTTGACATCAATACAAGGAATTCAGTTAGATATTTCCCCATTCTTATTCTTCTTTAAAAGTTAAGTTTGAATGGATGTGTAAAAATTTCTGGTTACAAAACTGAAATAAAAACTTGTTTCTTTGGGATTTTTGAGCCTAAGAACTGTTAAAGAAATTGGGGCATGTTTGGAGTAATACTATTATGCTTTTTGATAGTTAGGTAATTTCATTCACTTTCATCTCCAGTTGTTAGTTCATCTCAAACATCAATCAAACTCATAACAAAAAAGCATGTTCATTAATGGTAGTGGGCCTGTACCTAAATGTCTAGCCATATTAGTAATTGACTAATTGGTTACCTCCATGAATAGCTATAGTGGCAGATTTCTTGGTGTGTTATTGGATAAGACTCTGTCCGTGGATATTGGTTTGTGTAGTTATACCGAGTATTTAGATTGTGGATTTAACCTTTTTTTGGCTCTGTGGTTGAGTGGTAGTATTGACTTGATTTGGATGCTTTAGCAAATTACAGTAGTTTTTTTTAGTTCATCTGCATTTTAGAACATCGAGTTTGGAGATTCGAACTCATTGTTAGGATTCTTCTCCCTAAAAAGAAAGCTCAACCCTTATTGTAAATTAATTTTGAAATGTTGAATATCATCCTTATTCTCTAATATCAAGTTGGTATTAGAATAGGAATTCTTGAGTTCGAATCCCTGTCAAGTTGTTTCCTTCCCAATTGAAATTGAATTCCACTTGTATGGCACTTTTCAATTTCTAAGTTCACAAATAAGGGGAGTGTTGGTTACCCCGACCCATCAATCTAAGCTTTAGGTTGATGGGTGGTTTAACACAATTTAATATTGATGTGAATACAATTGTAGCAAATTGCAGTAGTTTAGGATTTGATTTTGGATCATGTGTTTTGGTAGCAATGATTTTGAGTGGTTTAAATTCTGAAATGGGAAGTTTTGATGCAGAAAGTGGTTCCATGGCTGAGTGTTCCACAATTTGGAGATTGGGACCAAAAGAGAGAGGTGCCAGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAGCACAAAAGGGATTTGTCAAGGGCAAGCATTGGCAATGAAGAGGAACTGGTGGCCCCATCAGCCACTTCCACCACAAACACACCTCATTCTCAAGTTGATGAAAAACAGCAATTGAATCACTCCAACAGCAACTCCCCAACGGTAAGATTCCTTCTCTCATTACTTGCTTTTTTTTTTCTTTTTTTCTGCAACTTTACTTTAAGCATCTTCTTTTTCCTCTTGTGTGAGCATGCATGTGATTAGCAGACCCCGCCCCTCAATAATTAATTCAATATGCTATTGTGGGGAAAAAAAAGTGGTAATGCCCCACTTGATCTAAAAGGGTTTTTTCAACTTGAAATTCTTCCCCTACTTTATACCTTTGACTAGGCAAAAAGAAGGAAAGATAACCATCTAACCCAAGAATTATGTGTGCTCTAACTTTTTCTTTAATATATTCGTGACTTCCGAACTAGCTTACGCGTACCTTGACGAATGTCATGGAACATACCCTTCATCATTGAGATGTTAAAAAAAATTGTAGGAAATTAATTCCTAAACAGGTGGTTCACCACGGATTGAATTCATCACTTCCCTCTTGACCACTAGACCATCCCATGATATTTTTATGTGTCCTATAATTTAAGGCATAGCTTTTAGAGAGTGAATAGAGTTAAATCACCCCTAAAAAAATAATTAAATGTATTTTTAATTCAACATGTCAAAAAAATTAAAGTCAATAGACTAGGGTCTGTTAGCCTTAATTACCTTCGATGGAGATAGTGCACACCAATTATGAAGAGCAGCTATGTTTACTGTAACAATTTTTTTTTTTTTTTTGAAGATATACTCACTTTGACAATTGAACTATATTTTTGTTAGTTTATAAAGTATTGATATTACAACAAAAAACTCAAGAGTTTCAATCAGGTAATTTCTACCTTTTGTGAAGCTTATACATTATATATATCGGTAATATGTAAAAATCTCTCAAAATCTACTAATTTTAAAGAAAATCAAGCTTTGACAAATACCAAGTCCTTGATAACTAGGAAATAAATCATGGCTATAAAAATAATGTGAAAAATATTTTTGTTGTTAATTTCCATTGAATGTTGGGAGCATGAATGTTCCTCGGAGTAGTCAAGATTGTATCTTAAATTCAATGGGTAGAGTACTAACTATTCGCTACATATTTATCGCATAGTCTAATGATAATTGACATTTATTCTAAATTAAGAGGTTGTTGATTTAAATCTCTTAGTATACTAGAGAGGAAAAAAAACTATTATCTCCATATTTCTTTTTAAAAAAGTATTTGGCAGCAGGTAGGACATAACTTTAATTAGAGATGTCACTAAGGTAGGCTGCAAATGGGTCCGTGTGAATTAAGTTGATGCTAAATTCACACACTTGTTTAAGATTTTTGAAAGAAAAAAAAAATGATGTTGAAACCACGGTTTGTCTCAATTTATGCTAAATTCACACACAAACTCTGTAAGTATATATGTTTTTTTTTTTAAAAAAAAAAAATCAACAAATAAACATTTCATTTGAATTTCTTAATACTAATATTAGGTTCATAGTAGTGCATTTTGTTAGGGGTAGTTTGTGTATTTTGCAATTAGTGAATTATGTTAGGGGTAGTTTGTGTACTTTGCAATAATTTCTTAATTTTGATAGCCCATTGGTTATTGAAAATTTGACTATTTGAATCTAATAATTTCCCTAATCTGGAGGCTAAGTTTAAATTATTTTTCTTTTAAAGAAAAAACAATTATGACAATTTTTATAAAGATTCTTATATCTTAAATGCTTTCCCACATTTTCAACGTAAAATTTTAAAGTTTGATTAGGTTGAGTTGTGTTAGTGTAATACAGAACATTGGATTGGTTGGGAATTGATTAACTCAAAAGTATAAGTTGGTCTAATAAATAACGTTGGACTGGTTGGGAATTGATTAACTCAAAAGTATAGGTGGTTCAAAAAATCTCCCTAATTCAACTCGTATCATGTCCACCTTTAAATAGTATCCCATCGCTAAAACTGGATTCTTCAAATTCAAATCACCTTTGAAGTATTTGAAATTTCAATAATCTAACTTAGCATACGGTCTATTTAAAACAAAAAAAAAAAGTATTGGATGATCTATTTTTACAAAATAATCACAAATATAATTAAATTTTAAAGTATTTGCATCAATGATTAATAATACGTTTTAATACTACATTATAAATACCTAATTAATACTATATTATATATTATCGATAAATATGTTACGATACTCATTATAACAATCACTATAATTGTTACTTTTTTTATTAAAAAAATCATACCTATACTTATTTTCAGCCAAACTTTCATTAAATAATAAAACAAAAAGGAGAGAAAATACCTTCAATTACGAACTTTTACTGGATCCACAACTCGAGTCGTGATCGTTCATAGAAATAAACAAAACATAGGAAAAAGAACATTTTAATAAAGAGAAAAGTCCCTCATAAAACGATCTAACATACAAGAAGTAATGAAACTTCAAGTAAACAGATCTATCTTCAACTCTTTTAAAATTGAATTTTGAAAGATCTTGTAGATTAATCTATCTAACATAAAATTTATAGAAGTACACGATCCCAAAATATAGATAAATAACAACATAATTCAACTTAGCATACGGTTTATAAAATGGGTAACAAGTGGAGAAAATATAGATGAGAAGTGAATAGATGGATATTATTATTTATGTTTCTAGGAAGTGTCTCCATATAAACTTATCAACCTTTCAATTTGGTATTGATCAGACTATAAATTAGACAATGAATAAATAGGTTAAAAAAGTAATGATAACAGTGTTAGGTTGGAGTGATCGACTTTAATTTGCACAAGAAATAAAAATATTTATTTTCTCTCAGCATTTGAGTTGAGAATACTTATTGGAAGTTTTTGTCTTGTTTTTCTTATCAGACAAGGAAGAGCATACTAAGGTACTTCAACTGTTGTGTGAAAGCATGATCAAAAACTCAAATTCACCAATCTTGATTAATGATGTGATGGTTTCTCTCGGGGTTTTTTTTCCACATTTGGTTTGTAAGTTACTATATGAACATGAGCAACTACTTTAATTGAAATTAGATAAATATTTAGTTCTTCTTTTTATCTTGCTTCTAACCCAGTTGTCACTATTAAAAGGGAATCAGAGAAAAAGAAGAAAAAAAGTTTAACGTTTTCTTGTGGGT

mRNA sequence

GGAGGGTAGGCCCACACAGCTTCTCTGTGTGTTTTTCAGTTCATTAGTCTCTCGTTTTGCCTCATTTCTCTCTTTCTTGGTTGCTTTTTCAATCATCCAAACAAATTTCGGAAGGTTTTGAGATCAATCTCATGGAGGATCGCAAGGAGAAAGTGGTTCCATGGCTGAGTGTTCCACAATTTGGAGATTGGGACCAAAAGAGAGAGGTGCCAGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAGCACAAAAGGGATTTGTCAAGGGCAAGCATTGGCAATGAAGAGGAACTGGTGGCCCCATCAGCCACTTCCACCACAAACACACCTCATTCTCAAGTTGATGAAAAACAGCAATTGAATCACTCCAACAGCAACTCCCCAACGACAAGGAAGAGCATACTAAGGTACTTCAACTGTTGTGTGAAAGCATGATCAAAAACTCAAATTCACCAATCTTGATTAATGATGTGATGGTTTCTCTCGGGGTTTTTTTTCCACATTTGGTTTGTAAGTTACTATATGAACATGAGCAACTACTTTAATTGAAATTAGATAAATATTTAGTTCTTCTTTTTATCTTGCTTCTAACCCAGTTGTCACTATTAAAAGGGAATCAGAGAAAAAGAAGAAAAAAAGTTTAACGTTTTCTTGTGGGT

Coding sequence (CDS)

ATGGAGGATCGCAAGGAGAAAGTGGTTCCATGGCTGAGTGTTCCACAATTTGGAGATTGGGACCAAAAGAGAGAGGTGCCAGATTATTCAGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAGCACAAAAGGGATTTGTCAAGGGCAAGCATTGGCAATGAAGAGGAACTGGTGGCCCCATCAGCCACTTCCACCACAAACACACCTCATTCTCAAGTTGATGAAAAACAGCAATTGAATCACTCCAACAGCAACTCCCCAACGACAAGGAAGAGCATACTAAGGTACTTCAACTGTTGTGTGAAAGCATGA

Protein sequence

MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVAPSATSTTNTPHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA
Homology
[Close]
BLAST of Sed0016172 vs. NCBI nr
Match: XP_004148448.1 (uncharacterized protein LOC101211284 [Cucumis sativus] >KGN62090.1 hypothetical protein Csa_006726 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 4.7e-43
Identity = 91/104 (87.50%), Postives = 95/104 (91.35%), Query Frame = 0 

Query: 1   MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 60
           MEDRKEKV PW+SVPQFGDW+QK  VPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL+A
Sbjct: 1   MEDRKEKVAPWMSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60

Query: 61  PSATSTTNTPHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA 105
            SAT TTNTPHS VDE  QLN +NSNSPTTRKSILRYFNCCVKA
Sbjct: 61  SSATPTTNTPHSHVDENHQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]
BLAST of Sed0016172 vs. NCBI nr
Match: XP_008457901.1 (PREDICTED: uncharacterized protein LOC103497474 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 1.0e-42
Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = 0 

Query: 1   MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 60
           ME+RKEKV PW+SVPQFGDW+QK EVPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL+A
Sbjct: 1   MEERKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60

Query: 61  PSATSTTNTPHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA 105
            S T TTNTPHS VDE +QLN +NSNSPTTRKSILRYFNCCVKA
Sbjct: 61  SSVTPTTNTPHSIVDENRQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]
BLAST of Sed0016172 vs. NCBI nr
Match: XP_038900911.1 (uncharacterized protein LOC120087959 [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 3.0e-42
Identity = 89/104 (85.58%), Postives = 93/104 (89.42%), Query Frame = 0 

Query: 1   MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 60
           MEDRKEKV PW+SVPQFGDW+QK EVPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL+ 
Sbjct: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMV 60

Query: 61  PSATSTTNTPHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA 105
            SAT TTNTPHS  DE  QLN +NSNSPTTRKSIL YFNCCVKA
Sbjct: 61  SSATPTTNTPHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 104

[Close]
BLAST of Sed0016172 vs. NCBI nr
Match: XP_023006844.1 (uncharacterized protein LOC111499515 [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 7.5e-41
Identity = 90/109 (82.57%), Postives = 94/109 (86.24%), Query Frame = 0 

Query: 1   MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 60
           MEDRKEKV PWLSVPQFGDW+QKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEE+L+A
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60

Query: 61  PSATS-----TTNTPHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA 105
            SATS     TTNT H    E  QLNHSN+NSPTTRKSIL YFNCCVKA
Sbjct: 61  SSATSTTTTTTTNTSHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 109

[Close]
BLAST of Sed0016172 vs. NCBI nr
Match: XP_023533301.1 (uncharacterized protein LOC111795235 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.9 bits (442), Expect = 3.7e-40
Identity = 89/109 (81.65%), Postives = 93/109 (85.32%), Query Frame = 0 

Query: 1   MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 60
           MEDRKEKV PWLSVPQFGDW+QKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEE+L+A
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60

Query: 61  PSATSTTNT-----PHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA 105
            SATSTT T      H    E  QLNHSN+NSPTTRKSIL YFNCCVKA
Sbjct: 61  SSATSTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 109

[Close]
BLAST of Sed0016172 vs. ExPASy TrEMBL
Match: A0A0A0LJN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297140 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.3e-43
Identity = 91/104 (87.50%), Postives = 95/104 (91.35%), Query Frame = 0 

Query: 1   MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 60
           MEDRKEKV PW+SVPQFGDW+QK  VPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL+A
Sbjct: 1   MEDRKEKVAPWMSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60

Query: 61  PSATSTTNTPHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA 105
            SAT TTNTPHS VDE  QLN +NSNSPTTRKSILRYFNCCVKA
Sbjct: 61  SSATPTTNTPHSHVDENHQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]
BLAST of Sed0016172 vs. ExPASy TrEMBL
Match: A0A1S3C6Q7 (uncharacterized protein LOC103497474 OS=Cucumis melo OX=3656 GN=LOC103497474 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.0e-43
Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = 0 

Query: 1   MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 60
           ME+RKEKV PW+SVPQFGDW+QK EVPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL+A
Sbjct: 1   MEERKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60

Query: 61  PSATSTTNTPHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA 105
            S T TTNTPHS VDE +QLN +NSNSPTTRKSILRYFNCCVKA
Sbjct: 61  SSVTPTTNTPHSIVDENRQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]
BLAST of Sed0016172 vs. ExPASy TrEMBL
Match: A0A6J1L3A7 (uncharacterized protein LOC111499515 OS=Cucurbita maxima OX=3661 GN=LOC111499515 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.6e-41
Identity = 90/109 (82.57%), Postives = 94/109 (86.24%), Query Frame = 0 

Query: 1   MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 60
           MEDRKEKV PWLSVPQFGDW+QKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEE+L+A
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60

Query: 61  PSATS-----TTNTPHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA 105
            SATS     TTNT H    E  QLNHSN+NSPTTRKSIL YFNCCVKA
Sbjct: 61  SSATSTTTTTTTNTSHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 109

[Close]
BLAST of Sed0016172 vs. ExPASy TrEMBL
Match: A0A6J1G5D0 (uncharacterized protein LOC111451041 OS=Cucurbita moschata OX=3662 GN=LOC111451041 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.2e-40
Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 0 

Query: 1   MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 60
           MEDRKEKV PWLSVPQFGDW+QKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEE+L+A
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60

Query: 61  PSATSTTNT------PHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA 105
            SAT+TT T       H    E  QLNHSN+NSPTTRKSIL YFNCCVKA
Sbjct: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 110

[Close]
BLAST of Sed0016172 vs. ExPASy TrEMBL
Match: A0A6J1DU25 (uncharacterized protein LOC111024373 OS=Momordica charantia OX=3673 GN=LOC111024373 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.0e-31
Identity = 80/108 (74.07%), Postives = 83/108 (76.85%), Query Frame = 0 

Query: 1   MEDRKEKVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 60
           MEDRKEKV PWLSVPQFGDW+QK  VPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL+ 
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIM 60

Query: 61  PSAT--STTNTPHSQVDEKQQLNH--SNSNSPTTRKSILRYFNCCVKA 105
            S+T  ST NT           NH  S   SPTTRKSIL YFNCCVKA
Sbjct: 61  ASSTTPSTNNT-------SDNANHQFSPQPSPTTRKSILSYFNCCVKA 101

[Close]
BLAST of Sed0016172 vs. TAIR 10
Match: AT5G09960.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-27
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = 0 

Query: 2   EDRKEKVVPWLSVPQFGDWDQK--REVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELV 61
           +DRKEK  PWLSVPQFGDWDQK    +PDYS+DF+KIRE RKQ+KRD SRAS+GNEEEL+
Sbjct: 3   DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELI 62

Query: 62  AP--SATSTTNTPHSQVDEKQQL---NHSNSNSPTTRKSILRYFNCCVKA 105
            P  SATST      Q + +++    +H   +SP+TR+S+   FNCCVKA
Sbjct: 63  KPPESATSTAELTTVQSENQREFSPSHHHQPHSPSTRRSMFSCFNCCVKA 112

[Close]
BLAST of Sed0016172 vs. TAIR 10
Match: AT5G64850.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 111.3 bits (277), Expect = 4.7e-25
Identity = 62/114 (54.39%), Postives = 75/114 (65.79%), Query Frame = 0 

Query: 1   MEDRKE-KVVPWLSVPQFGDWDQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELV 60
           MEDRKE K  PWLSVPQFGDWDQK    DYS+DFSKIRE RK +KRD SRAS+GNEEEL+
Sbjct: 1   MEDRKENKNSPWLSVPQFGDWDQKGGSIDYSMDFSKIREMRKLNKRDASRASLGNEEELI 60

Query: 61  AP---------SATSTTNTPHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVKA 105
            P         +      T HS  + + + +H + +SP+ R+ I   FNCCVKA
Sbjct: 61  NPFHDQPPVDTAKPKKLTTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCCVKA 114

[Close]
BLAST of Sed0016172 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-11
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 0 

Query: 3   DRKEKVVPWLSVPQFGDWDQK--REVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELVA 62
           D++ +   W  VPQFG WDQK   +  +YSV FSK R NRKQ+K  +  +S+G+E+EL+ 
Sbjct: 2   DKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGSEQELMV 61

Query: 63  PSATSTTNTPHSQVDEKQQLNHSNSNSPTTRKSILRYFNCCVK 104
                +    H Q+  + +    + +    +K IL Y NCC++
Sbjct: 62  -----SVRRNHQQLHHRHET--QDDDPVMKKKRILTYINCCIR 97

The following BLAST results are available for this feature:
BLAST of Sed0016172 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148448.14.7e-4387.50uncharacterized protein LOC101211284 [Cucumis sativus] >KGN62090.1 hypothetical ... [more]
XP_008457901.11.0e-4286.54PREDICTED: uncharacterized protein LOC103497474 [Cucumis melo][more]
XP_038900911.13.0e-4285.58uncharacterized protein LOC120087959 [Benincasa hispida][more]
XP_023006844.17.5e-4182.57uncharacterized protein LOC111499515 [Cucurbita maxima][more]
XP_023533301.13.7e-4081.65uncharacterized protein LOC111795235 [Cucurbita pepo subsp. pepo][more]
BLAST of Sed0016172 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0016172 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJN92.3e-4387.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297140 PE=4 SV=1[more]
A0A1S3C6Q75.0e-4386.54uncharacterized protein LOC103497474 OS=Cucumis melo OX=3656 GN=LOC103497474 PE=... [more]
A0A6J1L3A73.6e-4182.57uncharacterized protein LOC111499515 OS=Cucurbita maxima OX=3661 GN=LOC111499515... [more]
A0A6J1G5D05.2e-4080.00uncharacterized protein LOC111451041 OS=Cucurbita moschata OX=3662 GN=LOC1114510... [more]
A0A6J1DU252.0e-3174.07uncharacterized protein LOC111024373 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
BLAST of Sed0016172 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G09960.12.2e-2759.09FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT5G64850.14.7e-2554.39FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT5G19473.11.3e-1135.92RPM1-interacting protein 4 (RIN4) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..90
NoneNo IPR availablePANTHERPTHR33882:SF2PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEINcoord: 1..103
NoneNo IPR availablePANTHERPTHR33882PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEINcoord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0016172.1Sed0016172.1mRNA