Sed0016160 (gene) Chayote v1

Overview


Name	Sed0016160
Type	gene
Organism	Sechium edule (Chayote v1)
Description	FAS1 domain-containing protein
Location	LG05: 34060867 .. 34061459 (+)
RNA-Seq Expression	Sed0016160
Synteny	Sed0016160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCCTGGTTTTTAGTTCTTCTCTTCTTGGTCTGGAACGTTCAGGCTACGCCTATCGCCCATACCAACTGCAAGCTGCCATGGATGAGATGAGATTGAAATCTTACCATGGCTTTGTCATACTTCTCAAGATCCTAAATAGCTCACATAAGTCCTTGAAAAATTCAGATATAACCTTCTTCATGCCCACTGATGAGGAACTTTCTCAAGCTGCTATCACCCTGGACCGACTAGAAGTTTTTGTTCTTAGCCATTCTATCCCCACAAGATTACTGCTCAACAATCTTCTACACTTCCCAAATGGGAGCCTGATTCCATCAAGCATCCCAAACAGAATGATCAGCATAACCAACTGCAGAAAGATGAGCGTGTGCGTAAACAATGCACGAATCATCATCCCGAACGTGTGCTTAAGCTCGTCCATAAGATGTCATGGTATAAACACAACTATTGCATATGACAATACTTCCTTTTCAAACACGCTAACTGCCAAGCAGAGTTACCGCAAAACGATAATTCAGCAGAATGAGAAGAAAGGAGTAAAATCTTTACAGTCTGCAGCAATGAAGAGGAACCGCCCACTACATTGA

mRNA sequence

ATGGCTCCCTGGTTTTTAGTTCTTCTCTTCTTGGTCTGGAACGTTCAGGCTACGCCTATCATGAGATTGAAATCTTACCATGGCTTTGTCATACTTCTCAAGATCCTAAATAGCTCACATAAGTCCTTGAAAAATTCAGATATAACCTTCTTCATGCCCACTGATGAGGAACTTTCTCAAGCTGCTATCACCCTGGACCGACTAGAAGTTTTTGTTCTTAGCCATTCTATCCCCACAAGATTACTGCTCAACAATCTTCTACACTTCCCAAATGGGAGCCTGATTCCATCAAGCATCCCAAACAGAATGATCAGCATAACCAACTGCAGAAAGATGAGCGTGTGCGTAAACAATGCACGAATCATCATCCCGAACGTGTGCTTAAGCTCGTCCATAAGATGTCATGGTATAAACACAACTATTGCATATGACAATACTTCCTTTTCAAACACGCTAACTGCCAAGCAGAGTTACCGCAAAACGATAATTCAGCAGAATGAGAAGAAAGGAGTAAAATCTTTACAGTCTGCAGCAATGAAGAGGAACCGCCCACTACATTGA

Coding sequence (CDS)

ATGGCTCCCTGGTTTTTAGTTCTTCTCTTCTTGGTCTGGAACGTTCAGGCTACGCCTATCATGAGATTGAAATCTTACCATGGCTTTGTCATACTTCTCAAGATCCTAAATAGCTCACATAAGTCCTTGAAAAATTCAGATATAACCTTCTTCATGCCCACTGATGAGGAACTTTCTCAAGCTGCTATCACCCTGGACCGACTAGAAGTTTTTGTTCTTAGCCATTCTATCCCCACAAGATTACTGCTCAACAATCTTCTACACTTCCCAAATGGGAGCCTGATTCCATCAAGCATCCCAAACAGAATGATCAGCATAACCAACTGCAGAAAGATGAGCGTGTGCGTAAACAATGCACGAATCATCATCCCGAACGTGTGCTTAAGCTCGTCCATAAGATGTCATGGTATAAACACAACTATTGCATATGACAATACTTCCTTTTCAAACACGCTAACTGCCAAGCAGAGTTACCGCAAAACGATAATTCAGCAGAATGAGAAGAAAGGAGTAAAATCTTTACAGTCTGCAGCAATGAAGAGGAACCGCCCACTACATTGA

Protein sequence

MAPWFLVLLFLVWNVQATPIMRLKSYHGFVILLKILNSSHKSLKNSDITFFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNCRKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKKGVKSLQSAAMKRNRPLH

Homology

[Close]

BLAST of Sed0016160 vs. NCBI nr
Match: XP_038887869.1 (uncharacterized protein LOC120077861 [Benincasa hispida])

HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71
Identity = 149/197 (75.63%), Postives = 164/197 (83.25%), Query Frame = 0


Query: 1   MAPWFLVLLFLVWNVQATPI-----------MRLKSYHGFVILLKILNSSHKSLKNSDIT 60
           MAPWF VLLFLV   QAT I           MRLKSYHGFVILL ILNSSHK+L+NSDIT
Sbjct: 1   MAPWFFVLLFLVAKAQATTINQTDLQVAMDEMRLKSYHGFVILLNILNSSHKTLQNSDIT 60

Query: 61  FFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNC 120
           FFMP D+ELS AAI+ D LE FVLSHS+PT LLLNNLLHFPNGSL+PSSIPNRMISITNC
Sbjct: 61  FFMPNDQELSLAAISPDGLEDFVLSHSVPTALLLNNLLHFPNGSLVPSSIPNRMISITNC 120

Query: 121 RKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKK 180
           RKM VCVNNARI+ PNVCL+SSIRCHGI++TI YD TS S+TL AKQS  +TI+Q+NEKK
Sbjct: 121 RKMGVCVNNARIVTPNVCLTSSIRCHGISSTITYDKTSISDTLPAKQSSAETIVQRNEKK 180

Query: 181 GVKSLQSAAMKRNRPLH 187
             KSLQSAAMK+NRPLH
Sbjct: 181 AAKSLQSAAMKKNRPLH 197

[Close]

BLAST of Sed0016160 vs. NCBI nr
Match: XP_022989473.1 (uncharacterized protein LOC111486521 [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 4.0e-69
Identity = 145/197 (73.60%), Postives = 165/197 (83.76%), Query Frame = 0


Query: 1   MAPWFLVLLFLVWNVQATPI-----------MRLKSYHGFVILLKILNSSHKSLKNSDIT 60
           MA WF VLLFLV N +AT             MR+KSYHGFVILLKILNSSHK+L NSDIT
Sbjct: 1   MASWFFVLLFLVGNARATTFNQTDLRAAMDDMRMKSYHGFVILLKILNSSHKNLLNSDIT 60

Query: 61  FFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNC 120
           FFMP D+ELS+AAI+ DR+E FVLSHSIPTRL+LNNLLHFPNGSL+PSSIPNRMISITNC
Sbjct: 61  FFMPADQELSRAAISPDRIEEFVLSHSIPTRLVLNNLLHFPNGSLVPSSIPNRMISITNC 120

Query: 121 RKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKK 180
           RKM VC+NNA+I+ PNVCL+S+IRCHGI+TTIAYDNTSFS+    KQS  +TI+Q+NEKK
Sbjct: 121 RKMGVCMNNAQIVTPNVCLNSAIRCHGISTTIAYDNTSFSD---IKQSSAETIVQRNEKK 180

Query: 181 GVKSLQSAAMKRNRPLH 187
           G KSLQ AAMK+NR LH
Sbjct: 181 GAKSLQYAAMKKNRLLH 194

[Close]

BLAST of Sed0016160 vs. NCBI nr
Match: XP_023529797.1 (uncharacterized protein LOC111792513 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.6 bits (693), Expect = 5.2e-69
Identity = 143/197 (72.59%), Postives = 165/197 (83.76%), Query Frame = 0


Query: 1   MAPWFLVLLFLVWNVQATPI-----------MRLKSYHGFVILLKILNSSHKSLKNSDIT 60
           MA WF VLLFLV N +AT             MR+KSYHGFVILLKILNSSHK+L NSDIT
Sbjct: 1   MASWFFVLLFLVGNARATTFNQTDLRAAMDDMRMKSYHGFVILLKILNSSHKNLLNSDIT 60

Query: 61  FFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNC 120
           FFMP D+ELS+AAI+ DR+E FVLSHSIPTRL+L+NLLHFPNGSL+PSSIPNRMIS+TNC
Sbjct: 61  FFMPADQELSRAAISPDRIEEFVLSHSIPTRLVLSNLLHFPNGSLVPSSIPNRMISVTNC 120

Query: 121 RKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKK 180
           RKM VC+NNA+I+ PNVCL+S+IRCHGI+TTIAYDNTSFS+    K S  +TI+Q+NEKK
Sbjct: 121 RKMGVCMNNAQIVTPNVCLNSAIRCHGISTTIAYDNTSFSD---KKHSSAETIVQRNEKK 180

Query: 181 GVKSLQSAAMKRNRPLH 187
           G KSLQ AAMK+NRPLH
Sbjct: 181 GAKSLQYAAMKKNRPLH 194

[Close]

BLAST of Sed0016160 vs. NCBI nr
Match: XP_022928395.1 (uncharacterized protein LOC111435225 [Cucurbita moschata] >KAG7022813.1 hypothetical protein SDJN02_16549, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.6 bits (693), Expect = 5.2e-69
Identity = 143/197 (72.59%), Postives = 165/197 (83.76%), Query Frame = 0


Query: 1   MAPWFLVLLFLVWNVQATPI-----------MRLKSYHGFVILLKILNSSHKSLKNSDIT 60
           MA WF VLLFLV N +AT             MR+KSYHGFVILLKILNSSHK+L NSDIT
Sbjct: 1   MASWFFVLLFLVGNARATTFNQTDLRAAMDDMRMKSYHGFVILLKILNSSHKNLLNSDIT 60

Query: 61  FFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNC 120
           FFMP D+ELS+AAI+ DR+E FVLSHSIPTRL+L+NLLHFPNGSL+PSSIPNRMIS+TNC
Sbjct: 61  FFMPADQELSRAAISPDRIEEFVLSHSIPTRLVLSNLLHFPNGSLVPSSIPNRMISVTNC 120

Query: 121 RKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKK 180
           RKM VC+NNA+I+ PNVCL+S+IRCHGI+TTIAYDNTSFS+    K S  +TI+Q+NEKK
Sbjct: 121 RKMGVCMNNAQIVTPNVCLNSAIRCHGISTTIAYDNTSFSD---IKHSSAETIVQRNEKK 180

Query: 181 GVKSLQSAAMKRNRPLH 187
           G KSLQ AAMK+NRPLH
Sbjct: 181 GAKSLQYAAMKKNRPLH 194

[Close]

BLAST of Sed0016160 vs. NCBI nr
Match: XP_004149424.1 (uncharacterized protein LOC101220860 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 2.2e-67
Identity = 143/197 (72.59%), Postives = 160/197 (81.22%), Query Frame = 0


Query: 1   MAPWFLVLLFLVWNVQATPI-----------MRLKSYHGFVILLKILNSSHKSLKNSDIT 60
           MAPWF VLLFLV    AT             MRLKSYHGF ILLKILNS+ K+L+NS+IT
Sbjct: 1   MAPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60

Query: 61  FFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNC 120
           FFMPTD+ELSQA I+ DRLE FVLSHSIPT LLLNNLLHFPNG+L+PSSIPNRMI ITNC
Sbjct: 61  FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120

Query: 121 RKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKK 180
           RKM VC+NNARII PNVCL+SSIRCHGI+T I+YD TSFS+TL AKQS  + I+Q+NE K
Sbjct: 121 RKMGVCLNNARIITPNVCLTSSIRCHGISTAISYDKTSFSDTLPAKQSSAEIIVQRNEIK 180

Query: 181 GVKSLQSAAMKRNRPLH 187
           G KSLQS AMK+NR LH
Sbjct: 181 GAKSLQSGAMKKNRSLH 197

[Close]

BLAST of Sed0016160 vs. ExPASy TrEMBL
Match: A0A6J1JQD1 (uncharacterized protein LOC111486521 OS=Cucurbita maxima OX=3661 GN=LOC111486521 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.9e-69
Identity = 145/197 (73.60%), Postives = 165/197 (83.76%), Query Frame = 0


Query: 1   MAPWFLVLLFLVWNVQATPI-----------MRLKSYHGFVILLKILNSSHKSLKNSDIT 60
           MA WF VLLFLV N +AT             MR+KSYHGFVILLKILNSSHK+L NSDIT
Sbjct: 1   MASWFFVLLFLVGNARATTFNQTDLRAAMDDMRMKSYHGFVILLKILNSSHKNLLNSDIT 60

Query: 61  FFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNC 120
           FFMP D+ELS+AAI+ DR+E FVLSHSIPTRL+LNNLLHFPNGSL+PSSIPNRMISITNC
Sbjct: 61  FFMPADQELSRAAISPDRIEEFVLSHSIPTRLVLNNLLHFPNGSLVPSSIPNRMISITNC 120

Query: 121 RKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKK 180
           RKM VC+NNA+I+ PNVCL+S+IRCHGI+TTIAYDNTSFS+    KQS  +TI+Q+NEKK
Sbjct: 121 RKMGVCMNNAQIVTPNVCLNSAIRCHGISTTIAYDNTSFSD---IKQSSAETIVQRNEKK 180

Query: 181 GVKSLQSAAMKRNRPLH 187
           G KSLQ AAMK+NR LH
Sbjct: 181 GAKSLQYAAMKKNRLLH 194

[Close]

BLAST of Sed0016160 vs. ExPASy TrEMBL
Match: A0A6J1ERK4 (uncharacterized protein LOC111435225 OS=Cucurbita moschata OX=3662 GN=LOC111435225 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.5e-69
Identity = 143/197 (72.59%), Postives = 165/197 (83.76%), Query Frame = 0


Query: 1   MAPWFLVLLFLVWNVQATPI-----------MRLKSYHGFVILLKILNSSHKSLKNSDIT 60
           MA WF VLLFLV N +AT             MR+KSYHGFVILLKILNSSHK+L NSDIT
Sbjct: 1   MASWFFVLLFLVGNARATTFNQTDLRAAMDDMRMKSYHGFVILLKILNSSHKNLLNSDIT 60

Query: 61  FFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNC 120
           FFMP D+ELS+AAI+ DR+E FVLSHSIPTRL+L+NLLHFPNGSL+PSSIPNRMIS+TNC
Sbjct: 61  FFMPADQELSRAAISPDRIEEFVLSHSIPTRLVLSNLLHFPNGSLVPSSIPNRMISVTNC 120

Query: 121 RKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKK 180
           RKM VC+NNA+I+ PNVCL+S+IRCHGI+TTIAYDNTSFS+    K S  +TI+Q+NEKK
Sbjct: 121 RKMGVCMNNAQIVTPNVCLNSAIRCHGISTTIAYDNTSFSD---IKHSSAETIVQRNEKK 180

Query: 181 GVKSLQSAAMKRNRPLH 187
           G KSLQ AAMK+NRPLH
Sbjct: 181 GAKSLQYAAMKKNRPLH 194

[Close]

BLAST of Sed0016160 vs. ExPASy TrEMBL
Match: A0A0A0K7Q8 (FAS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G272100 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 143/197 (72.59%), Postives = 160/197 (81.22%), Query Frame = 0


Query: 1   MAPWFLVLLFLVWNVQATPI-----------MRLKSYHGFVILLKILNSSHKSLKNSDIT 60
           MAPWF VLLFLV    AT             MRLKSYHGF ILLKILNS+ K+L+NS+IT
Sbjct: 1   MAPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60

Query: 61  FFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNC 120
           FFMPTD+ELSQA I+ DRLE FVLSHSIPT LLLNNLLHFPNG+L+PSSIPNRMI ITNC
Sbjct: 61  FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120

Query: 121 RKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKK 180
           RKM VC+NNARII PNVCL+SSIRCHGI+T I+YD TSFS+TL AKQS  + I+Q+NE K
Sbjct: 121 RKMGVCLNNARIITPNVCLTSSIRCHGISTAISYDKTSFSDTLPAKQSSAEIIVQRNEIK 180

Query: 181 GVKSLQSAAMKRNRPLH 187
           G KSLQS AMK+NR LH
Sbjct: 181 GAKSLQSGAMKKNRSLH 197

[Close]

BLAST of Sed0016160 vs. ExPASy TrEMBL
Match: A0A6J1C1X3 (uncharacterized protein LOC111007704 OS=Momordica charantia OX=3673 GN=LOC111007704 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.8e-67
Identity = 145/198 (73.23%), Postives = 162/198 (81.82%), Query Frame = 0


Query: 1   MAPWFLVLLFLVWNVQATPI-----------MRLKSYHGFVILLKILNSSHKSLKNSDIT 60
           MAPWFLVLLFLV    AT I           MR KSY+GFVILLKILNSS+K+L+ S +T
Sbjct: 1   MAPWFLVLLFLVGKAHATAIDQTDLKAAMDDMRSKSYNGFVILLKILNSSNKALQYSGMT 60

Query: 61  FFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNC 120
           FFMPTD+ELS  AI+ DRLE FVLSHS+PT LLLNNLLHFPNGSL+PSSIPNRMISITNC
Sbjct: 61  FFMPTDQELSHVAISPDRLEEFVLSHSVPTPLLLNNLLHFPNGSLVPSSIPNRMISITNC 120

Query: 121 RKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKK 180
           RKM VCVNNARII PNVCL+SSIRCHGI+TTIAYD  S+S+TL AKQS  +  ++QNEKK
Sbjct: 121 RKMGVCVNNARIITPNVCLNSSIRCHGISTTIAYDRVSYSDTLPAKQSMFEATVRQNEKK 180

Query: 181 GVKSLQSAAMKR-NRPLH 187
           G KSLQSAAMK+  RPLH
Sbjct: 181 GAKSLQSAAMKKTTRPLH 198

[Close]

BLAST of Sed0016160 vs. ExPASy TrEMBL
Match: A0A5D3D7B0 (FAS1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00510 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.4e-64
Identity = 139/197 (70.56%), Postives = 156/197 (79.19%), Query Frame = 0


Query: 1   MAPWFLVLLFLVWNVQATPI-----------MRLKSYHGFVILLKILNSSHKSLKNSDIT 60
           M P F VLL LV   QA              MRLKSYHGFVILLKILN+S+K+L+NSDIT
Sbjct: 1   MTPSFFVLLLLVAKAQAIMANQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60

Query: 61  FFMPTDEELSQAAITLDRLEVFVLSHSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNC 120
           FFMPTD+ELSQA I+LD+LE FVLSHSIPT LLLNNLLHFPNGSL+PSSIPNRMI IT  
Sbjct: 61  FFMPTDQELSQADISLDQLEEFVLSHSIPTSLLLNNLLHFPNGSLVPSSIPNRMIKITKS 120

Query: 121 RKMSVCVNNARIIIPNVCLSSSIRCHGINTTIAYDNTSFSNTLTAKQSYRKTIIQQNEKK 180
           RKM VCVN ARI+ PNVCL+SSIRCHGI+T I+YD TSFS TL AKQ+  +TI+Q+NEKK
Sbjct: 121 RKMGVCVNEARIVTPNVCLTSSIRCHGISTAISYDKTSFSETLPAKQNLAETIVQRNEKK 180

Query: 181 GVKSLQSAAMKRNRPLH 187
           G KSL SA  K+NR LH
Sbjct: 181 GAKSLPSATTKKNRSLH 197

[Close]

BLAST of Sed0016160 vs. TAIR 10
Match: AT5G26730.1 (Fasciclin-like arabinogalactan family protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-29
Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 15  VQATPIMRLKSYHGFVILLKILNSSHKSLKNSDITFFMPTDEELSQAAITLDRLEVFVLS 74
           + A   MR +SY+GFVILL+ LN ++   +N+DITF MP+D ++S A IT + LE F+L 
Sbjct: 119 ISAMTDMRRQSYNGFVILLRFLNDTN-YFRNTDITFLMPSDNDISHADITPESLETFILK 178

Query: 75  HSIPTRLLLNNLLHFPNGSLIPSSIPNRMISITNCRKMSVCVNNARIIIPNVCLSSSIRC 134
           H+IP  L++N++LHFPN +L+P S  +RM +IT      + VNNARI+ PNVC +S I C
Sbjct: 179 HTIPAWLMINHMLHFPNRTLVPCSFSDRMFTITKSGGSGIYVNNARIVTPNVCQNSRISC 238

Query: 135 HGINTTIAYDNTSFSNTL 153
           HGI+  I+++    S  +
Sbjct: 239 HGISDVISFNQNYVSTKM 255

[Close]

BLAST of Sed0016160 vs. TAIR 10
Match: AT5G16920.1 (Fasciclin-like arabinogalactan family protein )

HSP 1 Score: 81.3 bits (199), Expect = 9.3e-16
Identity = 48/128 (37.50%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 21  MRLKSYHGFVILLKILNSSHKSLKNSDITFFMPTDEELSQAAI--TLDRLEVFVLSHSIP 80
           M   +Y  FV+L+ +L S +     +++TF MP D+ LS + I    D +  F+L HSIP
Sbjct: 43  MEKANYFSFVMLINMLPSVNPRFL-ANVTFLMPKDKTLSTSNIINQQDSVTEFLLRHSIP 102

Query: 81  TRLLLNNLLHFPNGSLIPSSIPNRMISITNCRKMSVCVNNARIIIPNVCLSSSIRCHGIN 140
           + LL  +L   PNGS++PSS+P+  + I+N  + +  +NN +II  N+C   SI+CHGI+
Sbjct: 103 SSLLFEHLNLIPNGSIVPSSLPHYTLEISNGGRSNYFLNNVKIISRNICSLGSIKCHGID 162

Query: 141 TTIAYDNT 147
             +   +T
Sbjct: 163 GILQSPST 169

The following BLAST results are available for this feature:

BLAST of Sed0016160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887869.1	1.1e-71	75.63	uncharacterized protein LOC120077861 [Benincasa hispida]	[more]
XP_022989473.1	4.0e-69	73.60	uncharacterized protein LOC111486521 [Cucurbita maxima]	[more]
XP_023529797.1	5.2e-69	72.59	uncharacterized protein LOC111792513 [Cucurbita pepo subsp. pepo]	[more]
XP_022928395.1	5.2e-69	72.59	uncharacterized protein LOC111435225 [Cucurbita moschata] >KAG7022813.1 hypothet...	[more]
XP_004149424.1	2.2e-67	72.59	uncharacterized protein LOC101220860 [Cucumis sativus]	[more]

BLAST of Sed0016160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0016160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JQD1	1.9e-69	73.60	uncharacterized protein LOC111486521 OS=Cucurbita maxima OX=3661 GN=LOC111486521...	[more]
A0A6J1ERK4	2.5e-69	72.59	uncharacterized protein LOC111435225 OS=Cucurbita moschata OX=3662 GN=LOC1114352...	[more]
A0A0A0K7Q8	1.1e-67	72.59	FAS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G272100 PE=3 S...	[more]
A0A6J1C1X3	1.8e-67	73.23	uncharacterized protein LOC111007704 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5D3D7B0	1.4e-64	70.56	FAS1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Sed0016160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26730.1	1.5e-29	46.38	Fasciclin-like arabinogalactan family protein	[more]
AT5G16920.1	9.3e-16	37.50	Fasciclin-like arabinogalactan family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000782	FAS1 domain	SMART	SM00554	fasc_3	coord: 49..144 e-value: 0.0023 score: 27.2
IPR036378	FAS1 domain superfamily	GENE3D	2.30.180.10	FAS1 domain	coord: 15..142 e-value: 3.1E-6 score: 29.4
IPR036378	FAS1 domain superfamily	SUPERFAMILY	82153	FAS1 domain	coord: 28..139
None	No IPR available	PANTHER	PTHR36069:SF4	FASCICLIN-LIKE ARABINOGALACTAN FAMILY PROTEIN	coord: 19..169
None	No IPR available	PANTHER	PTHR36069	EXPRESSED PROTEIN-RELATED	coord: 19..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016160.1	Sed0016160.1	mRNA