Sed0016132 (gene) Chayote v1

Overview


Name	Sed0016132
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein bassoon
Location	LG07: 36098426 .. 36098920 (-)
RNA-Seq Expression	Sed0016132
Synteny	Sed0016132

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCAACAAAGCAAAGTTCAACACACAGGTAGCAGAAGAAGAAGATGATGGTTTCTATGCTGAGATTAGGAAGCAGATTGTTTTACTGTTGACAGCATACGATGCCGATGAGGACGAACAACGTCCCGAAACTGGATTTCCCAACTCCATAACTGCAGCCAAATGGGGCATGGAGGACCGAAAAACCGATCATCGCCCACAGCTAGAGAGAAATTTGAGATGGTGTCCAACTGGGAATGATTTTGAAGGTCCTGTTTGGCATGTGAATTCATGGGAGAATGGGAATGGAACAGGGGTTTTCATCCCTCGAGCAGTCAAATACAAAAGATATTGTATTTTCAGTATGTTCCTGTCTTAACTTGTGAGTTTCTAAAGCACAAGGCAATATTTAACATCACCTTTTTGTGTTGCAGGAAAGATGAGAAAGCATGATAGAAAAGAAAAACACGGACAAAAGGACAGCAAAACCCAGGATTACCCATGTTTTTAA

mRNA sequence

ATGGATTTCAACAAAGCAAAGTTCAACACACAGGTAGCAGAAGAAGAAGATGATGGTTTCTATGCTGAGATTAGGAAGCAGATTGTTTTACTGTTGACAGCATACGATGCCGATGAGGACGAACAACGTCCCGAAACTGGATTTCCCAACTCCATAACTGCAGCCAAATGGGGCATGGAGGACCGAAAAACCGATCATCGCCCACAGCTAGAGAGAAATTTGAGATGGTGTCCAACTGGGAATGATTTTGAAGGTCCTGTTTGGCATGTGAATTCATGGGAGAATGGGAATGGAACAGGGGTTTTCATCCCTCGAGCAGTCAAATACAAAAGATATTGTATTTTCAGAAAGATGAGAAAGCATGATAGAAAAGAAAAACACGGACAAAAGGACAGCAAAACCCAGGATTACCCATGTTTTTAA

Coding sequence (CDS)

ATGGATTTCAACAAAGCAAAGTTCAACACACAGGTAGCAGAAGAAGAAGATGATGGTTTCTATGCTGAGATTAGGAAGCAGATTGTTTTACTGTTGACAGCATACGATGCCGATGAGGACGAACAACGTCCCGAAACTGGATTTCCCAACTCCATAACTGCAGCCAAATGGGGCATGGAGGACCGAAAAACCGATCATCGCCCACAGCTAGAGAGAAATTTGAGATGGTGTCCAACTGGGAATGATTTTGAAGGTCCTGTTTGGCATGTGAATTCATGGGAGAATGGGAATGGAACAGGGGTTTTCATCCCTCGAGCAGTCAAATACAAAAGATATTGTATTTTCAGAAAGATGAGAAAGCATGATAGAAAAGAAAAACACGGACAAAAGGACAGCAAAACCCAGGATTACCCATGTTTTTAA

Protein sequence

MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADEDEQRPETGFPNSITAAKWGMEDRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCIFRKMRKHDRKEKHGQKDSKTQDYPCF

Homology

[Close]

BLAST of Sed0016132 vs. NCBI nr
Match: XP_011655764.1 (uncharacterized protein LOC105435583 [Cucumis sativus] >KGN52059.1 hypothetical protein Csa_007739 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 9.7e-44
Identity = 94/141 (66.67%), Postives = 113/141 (80.14%), Query Frame = 0


Query: 1   MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADED-EQRPETGFPNSITAAKWGM 60
           MDF KA+ NTQ+ EEE D +YAEIRKQI LLLTAYD D++ EQ P+       TAAK G 
Sbjct: 1   MDF-KAELNTQITEEE-DCYYAEIRKQISLLLTAYDDDDEVEQLPK-------TAAKPGA 60

Query: 61  EDRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCIFRKMR 120
           E R+ D  PQLERN+  CP GNDF+ PVWHVNSWENGNGTGVFIP+AVKYK+YC+FR++R
Sbjct: 61  EVRQRDCWPQLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLR 120

Query: 121 KHDRKEKHGQKDSKTQDYPCF 141
           KH+RKEKH QK+ +T+D+PCF
Sbjct: 121 KHERKEKHRQKNIETEDHPCF 132

[Close]

BLAST of Sed0016132 vs. NCBI nr
Match: XP_022957510.1 (uncharacterized protein LOC111458884 [Cucurbita moschata] >KAG6601308.1 hypothetical protein SDJN03_06541, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.6 bits (449), Expect = 7.7e-41
Identity = 92/127 (72.44%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 1   MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADEDEQRPETGFPNSITAAKWGME 60
           MDF KA+ NTQVA EEDDG+YAEIRKQI+LLLT YD DED +RP        TAAK G E
Sbjct: 1   MDF-KAELNTQVA-EEDDGYYAEIRKQIILLLTTYDDDEDVERPPK------TAAKRGAE 60

Query: 61  DRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCIFRKMRK 120
                H PQ ERNL WC  GND EGPVWHVNSWENGNGTGVFIP+AVKYKRY IFR+MRK
Sbjct: 61  QSGRRH-PQSERNLSWCLNGNDLEGPVWHVNSWENGNGTGVFIPQAVKYKRYSIFRRMRK 118

Query: 121 HDRKEKH 128
           H+RKEKH
Sbjct: 121 HERKEKH 118

[Close]

BLAST of Sed0016132 vs. NCBI nr
Match: KAG7032093.1 (hypothetical protein SDJN02_06136, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 7.7e-41
Identity = 92/127 (72.44%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 1   MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADEDEQRPETGFPNSITAAKWGME 60
           MDF KA+ NTQVA EEDDG+YAEIRKQI+LLLT YD DED +RP        TAAK G E
Sbjct: 1   MDF-KAELNTQVA-EEDDGYYAEIRKQIILLLTTYDDDEDVERPPK------TAAKRGAE 60

Query: 61  DRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCIFRKMRK 120
                H PQ ERNL WC  GND EGPVWHVNSWENGNGTGVFIP+AVKYKRY IFR+MRK
Sbjct: 61  QSGRRH-PQSERNLSWCLNGNDLEGPVWHVNSWENGNGTGVFIPQAVKYKRYSIFRRMRK 118

Query: 121 HDRKEKH 128
           H+RKEKH
Sbjct: 121 HERKEKH 118

[Close]

BLAST of Sed0016132 vs. NCBI nr
Match: XP_008446569.1 (PREDICTED: uncharacterized protein LOC103489264 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-40
Identity = 88/140 (62.86%), Postives = 109/140 (77.86%), Query Frame = 0


Query: 1   MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADEDEQRPETGFPNSITAAKWGME 60
           MDF KA+ NTQ+ EEE D +YAEIRKQI+LLLTAYD D++EQ P        TAAK G +
Sbjct: 58  MDF-KAELNTQITEEE-DCYYAEIRKQIILLLTAYD-DDEEQPPR-------TAAKPGAK 117

Query: 61  DRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCIFRKMRK 120
            ++ D  PQ++ NL  CP G DFE PVWHVNSWENGNGTGVFIP+AVKYK+YC+ R++RK
Sbjct: 118 VQQRDRWPQIKGNLSLCPNGKDFEEPVWHVNSWENGNGTGVFIPQAVKYKKYCVLRRLRK 177

Query: 121 HDRKEKHGQKDSKTQDYPCF 141
           H+RKEKH QK+ +T+D+ CF
Sbjct: 178 HERKEKHRQKNIETEDHSCF 187

[Close]

BLAST of Sed0016132 vs. NCBI nr
Match: XP_023524582.1 (uncharacterized protein LOC111788475 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-39
Identity = 90/127 (70.87%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 1   MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADEDEQRPETGFPNSITAAKWGME 60
           MDF KA+ NTQVA EEDDG+YAEIRKQI+LLLTA + D+D +RP        TAAK G E
Sbjct: 58  MDF-KAELNTQVA-EEDDGYYAEIRKQIILLLTALEDDDDVERPPK------TAAKRGAE 117

Query: 61  DRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCIFRKMRK 120
                H PQ ERNL WC  GND EGPVWHVNSWENGNGTGVFIP+AVKYKRY IFR+MRK
Sbjct: 118 QSGRRH-PQPERNLSWCLNGNDLEGPVWHVNSWENGNGTGVFIPQAVKYKRYSIFRRMRK 175

Query: 121 HDRKEKH 128
           H+RKEKH
Sbjct: 178 HERKEKH 175

[Close]

BLAST of Sed0016132 vs. ExPASy TrEMBL
Match: A0A0A0KT55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608470 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.7e-44
Identity = 94/141 (66.67%), Postives = 113/141 (80.14%), Query Frame = 0


Query: 1   MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADED-EQRPETGFPNSITAAKWGM 60
           MDF KA+ NTQ+ EEE D +YAEIRKQI LLLTAYD D++ EQ P+       TAAK G 
Sbjct: 1   MDF-KAELNTQITEEE-DCYYAEIRKQISLLLTAYDDDDEVEQLPK-------TAAKPGA 60

Query: 61  EDRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCIFRKMR 120
           E R+ D  PQLERN+  CP GNDF+ PVWHVNSWENGNGTGVFIP+AVKYK+YC+FR++R
Sbjct: 61  EVRQRDCWPQLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLR 120

Query: 121 KHDRKEKHGQKDSKTQDYPCF 141
           KH+RKEKH QK+ +T+D+PCF
Sbjct: 121 KHERKEKHRQKNIETEDHPCF 132

[Close]

BLAST of Sed0016132 vs. ExPASy TrEMBL
Match: A0A6J1H0R7 (uncharacterized protein LOC111458884 OS=Cucurbita moschata OX=3662 GN=LOC111458884 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.7e-41
Identity = 92/127 (72.44%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 1   MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADEDEQRPETGFPNSITAAKWGME 60
           MDF KA+ NTQVA EEDDG+YAEIRKQI+LLLT YD DED +RP        TAAK G E
Sbjct: 1   MDF-KAELNTQVA-EEDDGYYAEIRKQIILLLTTYDDDEDVERPPK------TAAKRGAE 60

Query: 61  DRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCIFRKMRK 120
                H PQ ERNL WC  GND EGPVWHVNSWENGNGTGVFIP+AVKYKRY IFR+MRK
Sbjct: 61  QSGRRH-PQSERNLSWCLNGNDLEGPVWHVNSWENGNGTGVFIPQAVKYKRYSIFRRMRK 118

Query: 121 HDRKEKH 128
           H+RKEKH
Sbjct: 121 HERKEKH 118

[Close]

BLAST of Sed0016132 vs. ExPASy TrEMBL
Match: A0A1S3BG13 (uncharacterized protein LOC103489264 OS=Cucumis melo OX=3656 GN=LOC103489264 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 6.4e-41
Identity = 88/140 (62.86%), Postives = 109/140 (77.86%), Query Frame = 0


Query: 1   MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADEDEQRPETGFPNSITAAKWGME 60
           MDF KA+ NTQ+ EEE D +YAEIRKQI+LLLTAYD D++EQ P        TAAK G +
Sbjct: 58  MDF-KAELNTQITEEE-DCYYAEIRKQIILLLTAYD-DDEEQPPR-------TAAKPGAK 117

Query: 61  DRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCIFRKMRK 120
            ++ D  PQ++ NL  CP G DFE PVWHVNSWENGNGTGVFIP+AVKYK+YC+ R++RK
Sbjct: 118 VQQRDRWPQIKGNLSLCPNGKDFEEPVWHVNSWENGNGTGVFIPQAVKYKKYCVLRRLRK 177

Query: 121 HDRKEKHGQKDSKTQDYPCF 141
           H+RKEKH QK+ +T+D+ CF
Sbjct: 178 HERKEKHRQKNIETEDHSCF 187

[Close]

BLAST of Sed0016132 vs. ExPASy TrEMBL
Match: A0A6J1JBG9 (uncharacterized protein LOC111485239 OS=Cucurbita maxima OX=3661 GN=LOC111485239 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.3e-38
Identity = 88/127 (69.29%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 1   MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADEDEQRPETGFPNSITAAKWGME 60
           MDF KA+ NTQVA EEDD +YAEIRKQI+LLLT YD DED +RP        TAAK G E
Sbjct: 1   MDF-KAELNTQVA-EEDDSYYAEIRKQIILLLTTYDDDEDVERPPK------TAAKRGAE 60

Query: 61  DRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCIFRKMRK 120
                H PQ ERNL WC  GND E PVWHVNSWENGNGTGVFIP+AV++KRY IFR+MRK
Sbjct: 61  QSGRCH-PQAERNLSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRK 118

Query: 121 HDRKEKH 128
           H+RKEKH
Sbjct: 121 HERKEKH 118

[Close]

BLAST of Sed0016132 vs. ExPASy TrEMBL
Match: A0A5A7SZ32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00810 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 73/114 (64.04%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 1   MDFNKAKFNTQVAEEEDDGFYAEIRKQIVLLLTAYDADEDEQRPETGFPNSITAAKWGME 60
           MDF KA+ NTQ+ EEE D +YAEIRKQI+LLLTAYD D++EQ P        TAAK G +
Sbjct: 1   MDF-KAELNTQITEEE-DCYYAEIRKQIILLLTAYD-DDEEQPPR-------TAAKPGAK 60

Query: 61  DRKTDHRPQLERNLRWCPTGNDFEGPVWHVNSWENGNGTGVFIPRAVKYKRYCI 115
            ++ D  PQ++ NL  CP G DFE PVWHVNSWENGNGTGVFIP+AVKYK+YC+
Sbjct: 61  VQQRDRWPQIKGNLSLCPNGKDFEEPVWHVNSWENGNGTGVFIPQAVKYKKYCV 104

The following BLAST results are available for this feature:

BLAST of Sed0016132 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655764.1	9.7e-44	66.67	uncharacterized protein LOC105435583 [Cucumis sativus] >KGN52059.1 hypothetical ...	[more]
XP_022957510.1	7.7e-41	72.44	uncharacterized protein LOC111458884 [Cucurbita moschata] >KAG6601308.1 hypothet...	[more]
KAG7032093.1	7.7e-41	72.44	hypothetical protein SDJN02_06136, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008446569.1	1.3e-40	62.86	PREDICTED: uncharacterized protein LOC103489264 [Cucumis melo]	[more]
XP_023524582.1	1.9e-39	70.87	uncharacterized protein LOC111788475 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0016132 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0016132 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT55	4.7e-44	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608470 PE=4 SV=1	[more]
A0A6J1H0R7	3.7e-41	72.44	uncharacterized protein LOC111458884 OS=Cucurbita moschata OX=3662 GN=LOC1114588...	[more]
A0A1S3BG13	6.4e-41	62.86	uncharacterized protein LOC103489264 OS=Cucumis melo OX=3656 GN=LOC103489264 PE=...	[more]
A0A6J1JBG9	1.3e-38	69.29	uncharacterized protein LOC111485239 OS=Cucurbita maxima OX=3661 GN=LOC111485239...	[more]
A0A5A7SZ32	1.3e-30	64.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0016132 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34956	OS05G0397300 PROTEIN	coord: 12..130
None	No IPR available	PANTHER	PTHR34956:SF1	SUBFAMILY NOT NAMED	coord: 12..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016132.1	Sed0016132.1	mRNA