Sed0016128 (gene) Chayote v1

Overview


Name	Sed0016128
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrotransposon protein
Location	LG11: 3854259 .. 3855285 (+)
RNA-Seq Expression	Sed0016128
Synteny	Sed0016128

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCCATGTTTCTACATATCATGGCTCATGATGTTAAGAACCGTGTCGTTCGAAAAATATTTACAAGATCCGGTGAAACAGTGTCGCGACACTTTCAATTTGTCCTAACTGCTATTATTCGTTGTCATGATATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGATAGTAGATGGAAGTGGTTTGAGGTACCATTATTTTACCTTTATAAAATAGAGTCCTTGTAGGAACCGAATTTCATTTCTTCCTTCGAACTATGCAGAATTGTCTAGGTGCATTGGATGGTACTCATATAGAGTTACAAGTCCCAGTTGAAAATCGTGCCTCCTTTAGAAATAGGAAGAGTATCATCACAACGAACGTTCTTGCTGTATGGGCTCCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCAGCTGACTCTAGAGTTCTTAGGGATGCTTTATCTCGTAACAATGGATTTCAAGTCCCTCATGGTAATTAAGGACTAAAAGAAAATGCTACTTTCACTTATAGTGAATGTATAATAACCTAGTGTTTATTGATCCAGGATACTATTACCTTTGTGATGCGGGTTATCCAAATGATGATGGATTTCTAGCTCCCTATAGAGGCGAACGTTATCATCTATCGAATTGGAGGGGTAGAAATCCACCACGGAATCCAAGAGAGTTTTTTAATAAGGCACACTCCTCGGCACGAAATATAATAGAAAGAGCGTTCGGTGCATTAAAAAATCGTTGGGCTATTCTGCGACACAAGTCTTACTATCCTCCAAAAGTGCAAGTGAAGATCATAACAGCTTGTTGTCGCTTACATAATTTAATATGTAGGGAAATGGGCTCTACGATTGGTTTAGAGATATTAGGGGAGAACGATGCTACAGTATACCAAGAGGAAATGGACGATACCCCAACGATTAATTTCGTCGAGACATCGCCTCTTTGGACTGCATTTCGAGATTCCATGGCCCAAAGAATGTTTGACACAGCCCAAAACTAG

mRNA sequence

ATGGTAGCCATGTTTCTACATATCATGGCTCATGATGTTAAGAACCGTGTCGTTCGAAAAATATTTACAAGATCCGGTGAAACAGTGTCGCGACACTTTCAATTTGTCCTAACTGCTATTATTCGTTGTCATGATATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGATAGTAGATGGAAGTGGTTTGAGTTACAAGTCCCAGTTGAAAATCGTGCCTCCTTTAGAAATAGGAAGAGTATCATCACAACGAACGTTCTTGCTGTATGGGCTCCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCAGCTGACTCTAGAGTTCTTAGGGATGCTTTATCTCGTAACAATGGATTTCAAGTCCCTCATGGATACTATTACCTTTGTGATGCGGGTTATCCAAATGATGATGGATTTCTAGCTCCCTATAGAGGCGAACGTTATCATCTATCGAATTGGAGGGGTAGAAATCCACCACGGAATCCAAGAGAGTTTTTTAATAAGGCACACTCCTCGGCACGAAATATAATAGAAAGAGCGTTCGGTGCATTAAAAAATCGTTGGGCTATTCTGCGACACAAGTCTTACTATCCTCCAAAAGTGCAAGTGAAGATCATAACAGCTTGTTGTCGCTTACATAATTTAATATGTAGGGAAATGGGCTCTACGATTGGTTTAGAGATATTAGGGGAGAACGATGCTACAGTATACCAAGAGGAAATGGACGATACCCCAACGATTAATTTCGTCGAGACATCGCCTCTTTGGACTGCATTTCGAGATTCCATGGCCCAAAGAATGTTTGACACAGCCCAAAACTAG

Coding sequence (CDS)

ATGGTAGCCATGTTTCTACATATCATGGCTCATGATGTTAAGAACCGTGTCGTTCGAAAAATATTTACAAGATCCGGTGAAACAGTGTCGCGACACTTTCAATTTGTCCTAACTGCTATTATTCGTTGTCATGATATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGATAGTAGATGGAAGTGGTTTGAGTTACAAGTCCCAGTTGAAAATCGTGCCTCCTTTAGAAATAGGAAGAGTATCATCACAACGAACGTTCTTGCTGTATGGGCTCCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCAGCTGACTCTAGAGTTCTTAGGGATGCTTTATCTCGTAACAATGGATTTCAAGTCCCTCATGGATACTATTACCTTTGTGATGCGGGTTATCCAAATGATGATGGATTTCTAGCTCCCTATAGAGGCGAACGTTATCATCTATCGAATTGGAGGGGTAGAAATCCACCACGGAATCCAAGAGAGTTTTTTAATAAGGCACACTCCTCGGCACGAAATATAATAGAAAGAGCGTTCGGTGCATTAAAAAATCGTTGGGCTATTCTGCGACACAAGTCTTACTATCCTCCAAAAGTGCAAGTGAAGATCATAACAGCTTGTTGTCGCTTACATAATTTAATATGTAGGGAAATGGGCTCTACGATTGGTTTAGAGATATTAGGGGAGAACGATGCTACAGTATACCAAGAGGAAATGGACGATACCCCAACGATTAATTTCGTCGAGACATCGCCTCTTTGGACTGCATTTCGAGATTCCATGGCCCAAAGAATGTTTGACACAGCCCAAAACTAG

Protein sequence

MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTDSRWKWFELQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEGSAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRGRNPPRNPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREMGSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMFDTAQN

Homology

[Close]

BLAST of Sed0016128 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 3.6e-90
Identity = 170/288 (59.03%), Postives = 205/288 (71.18%), Query Frame = 0


Query: 1   MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTD 60
           MVAMFLHI+AHDVKNRV+++ F RSGET+SRHF  VL A+IR HD L KKP+P+   CTD
Sbjct: 96  MVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTD 155

Query: 61  SRWKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEG 120
            RW+WFE            + VP  +RA +R RK  + TNVL V    G+F+YVLAGWEG
Sbjct: 156 QRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG 215

Query: 121 SAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRG-RNPPR 180
           SAADSR+LRDALSR N  +VP GYYYL DAGYPN +GFLAPYRG+RYHL  WRG  N P 
Sbjct: 216 SAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPS 275

Query: 181 NPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREM 240
             +EFFN  HSSARN+IERAFG LK RWAILR KSYYP +VQ + I ACC LHNLI REM
Sbjct: 276 TSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREM 335

Query: 241 GSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMF 276
            +    + + E D+T      DD   I+++ETS  W+ +RD++A+ MF
Sbjct: 336 TNFDIEDNIDEVDSTHATTAADD---IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0016128 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.9 bits (873), Expect = 1.1e-89
Identity = 169/288 (58.68%), Postives = 205/288 (71.18%), Query Frame = 0


Query: 1   MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTD 60
           MVAMFLHI+AHDVKNRV+++ F RSGET+SRHF  VL A+IR H+ L KKP+P+   CTD
Sbjct: 96  MVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTD 155

Query: 61  SRWKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEG 120
            RW+WFE            + VP  +RA +R RK  + TNVL V    G+F+YVLAGWEG
Sbjct: 156 QRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG 215

Query: 121 SAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRG-RNPPR 180
           SAADSR+LRDALSR N  +VP GYYYL DAGYPN +GFLAPYRG+RYHL  WRG  N P 
Sbjct: 216 SAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPS 275

Query: 181 NPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREM 240
             +EFFN  HSSARN+IERAFG LK RWAILR KSYYP +VQ + I ACC LHNLI REM
Sbjct: 276 TSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREM 335

Query: 241 GSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMF 276
            +    + + E D+T      DD   I+++ETS  W+ +RD++A+ MF
Sbjct: 336 TNFDIEDNIDEVDSTHATTAADD---IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0016128 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 1.5e-88
Identity = 167/288 (57.99%), Postives = 203/288 (70.49%), Query Frame = 0


Query: 1   MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTD 60
           MVAMFLHI+ HDVKNRV+++ F RSGET+SRHF  VL A+IR H+ L KKP+P+   CTD
Sbjct: 96  MVAMFLHILVHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTD 155

Query: 61  SRWKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEG 120
            RW+WFE            + VP  +RA +R RK  + TNVL V    G+F+YVLAGWEG
Sbjct: 156 QRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG 215

Query: 121 SAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRG-RNPPR 180
           SAADSR+LRDALSR N  +VP GYYYL DAGYPN +GFLAPYRG+RYHL  WRG  N P 
Sbjct: 216 SAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPS 275

Query: 181 NPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREM 240
             +EFFN  HS ARN+IERAFG LK RWAILR KSYYP +VQ + I ACC LHNLI REM
Sbjct: 276 TSKEFFNMKHSFARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREM 335

Query: 241 GSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMF 276
            +    + + E D+T      DD   I+++ETS  W+ +RD++A+ MF
Sbjct: 336 TNFDIEDNIDEVDSTHATTTADD---IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0016128 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 2.0e-88
Identity = 168/288 (58.33%), Postives = 203/288 (70.49%), Query Frame = 0


Query: 1   MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTD 60
           MVAMFLHI+AHDVKNRV+++ F RSGET+SRHF  VL A+IR H+ L KKP+P+   CTD
Sbjct: 96  MVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTD 155

Query: 61  SRWKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEG 120
            RWKWFE            + VP  +RA +R RK  + TNVL V    G+F+YVLAGWEG
Sbjct: 156 QRWKWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG 215

Query: 121 SAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRG-RNPPR 180
            AADSR+LRDALSR N  +VP GYYYL DAGY N +GFLAPYRG+RYHL  WRG  N P 
Sbjct: 216 LAADSRILRDALSRPNRLKVPKGYYYLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPS 275

Query: 181 NPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREM 240
             +EFFN  HSSARN+IERAFG LK RWAILR KSYYP +VQ + I ACC LHNLI REM
Sbjct: 276 TSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREM 335

Query: 241 GSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMF 276
            +    + + E D+T      DD   I+++ETS  W+ +RD++A+ MF
Sbjct: 336 TNFDIEDNIDEVDSTHATTAADD---IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0016128 vs. NCBI nr
Match: KAA0047510.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 2.0e-88
Identity = 167/288 (57.99%), Postives = 202/288 (70.14%), Query Frame = 0


Query: 1   MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTD 60
           MVAMFLHI+AHDVKNRV+++ F RSGET+S HF  VL A+IR H+ L KKP+P+   CTD
Sbjct: 96  MVAMFLHILAHDVKNRVIQREFMRSGETISCHFNMVLLAVIRLHEELLKKPQPVPNECTD 155

Query: 61  SRWKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEG 120
            RW+WFE            + VP  +RA +R RK  + TNVL V    G+F+YVLAGWEG
Sbjct: 156 QRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDRKGDFVYVLAGWEG 215

Query: 121 SAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRG-RNPPR 180
           SAADSR+LRDALSR NG +VP GYYYL DAGYPN +GFLAPYRG+RYHL  W G  N P 
Sbjct: 216 SAADSRILRDALSRPNGLKVPKGYYYLVDAGYPNPEGFLAPYRGQRYHLQEWHGPENAPS 275

Query: 181 NPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREM 240
             +EFFN  H SARN+IERAFG LK RWAILR KSYYP +VQ + I ACC LHNLI REM
Sbjct: 276 TSKEFFNMKHPSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREM 335

Query: 241 GSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMF 276
            +    + + E D+T      DD   I+++ETS  W+ +RD +A+ MF
Sbjct: 336 TNFDIEDNIDEVDSTHATTAADD---IHYIETSNEWSQWRDDLAEEMF 380

[Close]

BLAST of Sed0016128 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-11
Identity = 51/171 (29.82%), Postives = 78/171 (45.61%), Query Frame = 0


Query: 91  AVWAPSGEFIYVLAGWEGSAADSRVLRDA--------LSRNNGFQVPHG------YYYLC 150
           AV  P   F+ V+AGW GS  D  VL+++          R NG ++P         Y + 
Sbjct: 219 AVVDPDMRFLDVIAGWPGSLNDDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVG 278

Query: 151 DAGYPNDDGFLAPYRGERYHLSNWRGRNPPRNPREFFNKAHSSARNIIERAFGALKNRWA 210
           D+G+P     L PY+G+           P   P+  FNK HS A    + A   LK+RW 
Sbjct: 279 DSGFPLLPWLLTPYQGK-----------PTSLPQTEFNKRHSEATKAAQMALSKLKDRWR 338

Query: 211 ILRHKSYYPPKVQV-KIITACCRLHNLICREMGSTIGLEILGENDATVYQE 247
           I+    + P + ++ +II  CC LHN+I      T+  + L +     Y++
Sbjct: 339 IINGVMWMPDRNRLPRIIFVCCLLHNIIIDMEDQTLDDQPLSQQHDMNYRQ 378

[Close]

BLAST of Sed0016128 vs. ExPASy Swiss-Prot
Match: Q6AZB8 (Putative nuclease HARBI1 OS=Danio rerio OX=7955 GN=harbi1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.7e-05
Identity = 43/161 (26.71%), Postives = 70/161 (43.48%), Query Frame = 0


Query: 68  LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEGSAADSRVLRDALSRNNGFQ 127
           ++ P  + +S+ N+K   + N   V    G  +     W GS  D  V + +        
Sbjct: 155 IKAPNADDSSYVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQS-------- 214

Query: 128 VPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNW--RGRNPPRNPREF-FNKAHSSARNII 187
                  L +    +D+G+L      RY L  W       P +P ++ +N AH++   I+
Sbjct: 215 ---NVAKLFEEQENDDEGWL--LGDNRYPLKKWLMTPVQSPESPADYRYNLAHTTTHEIV 274

Query: 188 ERAFGALKNRWAIL-RHKSY--YPPKVQVKIITACCRLHNL 223
           +R F A++ R+  L   K Y  Y P+    II ACC LHN+
Sbjct: 275 DRTFRAIQTRFRCLDGAKGYLQYSPEKCSHIIQACCVLHNI 302

[Close]

BLAST of Sed0016128 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.7e-90
Identity = 170/288 (59.03%), Postives = 205/288 (71.18%), Query Frame = 0


Query: 1   MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTD 60
           MVAMFLHI+AHDVKNRV+++ F RSGET+SRHF  VL A+IR HD L KKP+P+   CTD
Sbjct: 96  MVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTD 155

Query: 61  SRWKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEG 120
            RW+WFE            + VP  +RA +R RK  + TNVL V    G+F+YVLAGWEG
Sbjct: 156 QRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG 215

Query: 121 SAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRG-RNPPR 180
           SAADSR+LRDALSR N  +VP GYYYL DAGYPN +GFLAPYRG+RYHL  WRG  N P 
Sbjct: 216 SAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPS 275

Query: 181 NPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREM 240
             +EFFN  HSSARN+IERAFG LK RWAILR KSYYP +VQ + I ACC LHNLI REM
Sbjct: 276 TSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREM 335

Query: 241 GSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMF 276
            +    + + E D+T      DD   I+++ETS  W+ +RD++A+ MF
Sbjct: 336 TNFDIEDNIDEVDSTHATTAADD---IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0016128 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 5.1e-90
Identity = 169/288 (58.68%), Postives = 205/288 (71.18%), Query Frame = 0


Query: 1   MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTD 60
           MVAMFLHI+AHDVKNRV+++ F RSGET+SRHF  VL A+IR H+ L KKP+P+   CTD
Sbjct: 96  MVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTD 155

Query: 61  SRWKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEG 120
            RW+WFE            + VP  +RA +R RK  + TNVL V    G+F+YVLAGWEG
Sbjct: 156 QRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG 215

Query: 121 SAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRG-RNPPR 180
           SAADSR+LRDALSR N  +VP GYYYL DAGYPN +GFLAPYRG+RYHL  WRG  N P 
Sbjct: 216 SAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPS 275

Query: 181 NPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREM 240
             +EFFN  HSSARN+IERAFG LK RWAILR KSYYP +VQ + I ACC LHNLI REM
Sbjct: 276 TSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREM 335

Query: 241 GSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMF 276
            +    + + E D+T      DD   I+++ETS  W+ +RD++A+ MF
Sbjct: 336 TNFDIEDNIDEVDSTHATTAADD---IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0016128 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 7.3e-89
Identity = 167/288 (57.99%), Postives = 203/288 (70.49%), Query Frame = 0


Query: 1   MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTD 60
           MVAMFLHI+ HDVKNRV+++ F RSGET+SRHF  VL A+IR H+ L KKP+P+   CTD
Sbjct: 96  MVAMFLHILVHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTD 155

Query: 61  SRWKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEG 120
            RW+WFE            + VP  +RA +R RK  + TNVL V    G+F+YVLAGWEG
Sbjct: 156 QRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG 215

Query: 121 SAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRG-RNPPR 180
           SAADSR+LRDALSR N  +VP GYYYL DAGYPN +GFLAPYRG+RYHL  WRG  N P 
Sbjct: 216 SAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPS 275

Query: 181 NPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREM 240
             +EFFN  HS ARN+IERAFG LK RWAILR KSYYP +VQ + I ACC LHNLI REM
Sbjct: 276 TSKEFFNMKHSFARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREM 335

Query: 241 GSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMF 276
            +    + + E D+T      DD   I+++ETS  W+ +RD++A+ MF
Sbjct: 336 TNFDIEDNIDEVDSTHATTTADD---IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0016128 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 9.6e-89
Identity = 167/288 (57.99%), Postives = 202/288 (70.14%), Query Frame = 0


Query: 1   MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTD 60
           MVAMFLHI+AHDVKNRV+++ F RSGET+S HF  VL A+IR H+ L KKP+P+   CTD
Sbjct: 96  MVAMFLHILAHDVKNRVIQREFMRSGETISCHFNMVLLAVIRLHEELLKKPQPVPNECTD 155

Query: 61  SRWKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEG 120
            RW+WFE            + VP  +RA +R RK  + TNVL V    G+F+YVLAGWEG
Sbjct: 156 QRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDRKGDFVYVLAGWEG 215

Query: 121 SAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRG-RNPPR 180
           SAADSR+LRDALSR NG +VP GYYYL DAGYPN +GFLAPYRG+RYHL  W G  N P 
Sbjct: 216 SAADSRILRDALSRPNGLKVPKGYYYLVDAGYPNPEGFLAPYRGQRYHLQEWHGPENAPS 275

Query: 181 NPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREM 240
             +EFFN  H SARN+IERAFG LK RWAILR KSYYP +VQ + I ACC LHNLI REM
Sbjct: 276 TSKEFFNMKHPSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREM 335

Query: 241 GSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMF 276
            +    + + E D+T      DD   I+++ETS  W+ +RD +A+ MF
Sbjct: 336 TNFDIEDNIDEVDSTHATTAADD---IHYIETSNEWSQWRDDLAEEMF 380

[Close]

BLAST of Sed0016128 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 9.6e-89
Identity = 168/288 (58.33%), Postives = 203/288 (70.49%), Query Frame = 0


Query: 1   MVAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTD 60
           MVAMFLHI+AHDVKNRV+++ F RSGET+SRHF  VL A+IR H+ L KKP+P+   CTD
Sbjct: 96  MVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTD 155

Query: 61  SRWKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEG 120
            RWKWFE            + VP  +RA +R RK  + TNVL V    G+F+YVLAGWEG
Sbjct: 156 QRWKWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG 215

Query: 121 SAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRG-RNPPR 180
            AADSR+LRDALSR N  +VP GYYYL DAGY N +GFLAPYRG+RYHL  WRG  N P 
Sbjct: 216 LAADSRILRDALSRPNRLKVPKGYYYLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPS 275

Query: 181 NPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLICREM 240
             +EFFN  HSSARN+IERAFG LK RWAILR KSYYP +VQ + I ACC LHNLI REM
Sbjct: 276 TSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREM 335

Query: 241 GSTIGLEILGENDATVYQEEMDDTPTINFVETSPLWTAFRDSMAQRMF 276
            +    + + E D+T      DD   I+++ETS  W+ +RD++A+ MF
Sbjct: 336 TNFDIEDNIDEVDSTHATTAADD---IHYIETSNEWSQWRDNLAEEMF 380

[Close]

BLAST of Sed0016128 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-39
Identity = 92/232 (39.66%), Postives = 124/232 (53.45%), Query Frame = 0


Query: 2   VAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILF---------KKPE 61
           +A+FL I+ H+++ R V+++F  SGET+SRHF  VL A+I      F         +  +
Sbjct: 78  LAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFFQPNSNSDTLENDD 137

Query: 62  PIQPSCTDSRWKW-FELQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEGSAA 121
           P    C      +   + V V+ +  FRN   ++T NVLA  +    F YVLAGWEGSA+
Sbjct: 138 PYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSAS 197

Query: 122 DSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLSNWRGRNPPRNPRE 181
           D +VL  AL+R N  QVP G YY+ D  YPN  GF+APY G           N     +E
Sbjct: 198 DQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGV--------STNSREEAKE 257

Query: 182 FFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACCRLHNLI 224
            FN+ H      I R FGALK R+ IL     YP + QVK++ A C LHN +
Sbjct: 258 MFNERHKLLHRAIHRTFGALKERFPILLSAPPYPLQTQVKLVIAACALHNYV 301

[Close]

BLAST of Sed0016128 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 119.0 bits (297), Expect = 6.0e-27
Identity = 76/196 (38.78%), Postives = 100/196 (51.02%), Query Frame = 0


Query: 99  FIYVLAGWEGSAADSRVLRDALSRNNGFQVPHGYYYLCDAGYPNDDGFLAPYRGERYHLS 158
           FIYVL+GWEGSA DSRVL DAL +          +YL D G+ N   FLAP+RG RYHL 
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQ 84

Query: 159 NWRG-RNPPRNPREFFNKAHSSARNIIERAFGALKNRWAILRHKSYYPPKVQVKIITACC 218
            + G R  P  P E FN  H S RN+IER FG  K+R+AI +    +  K Q  ++  C 
Sbjct: 85  EFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCA 144

Query: 219 RLHNLI---CREMGSTIGLEILGENDA------TVYQEEMDDTPTINFV----ETSPLWT 278
            LHN +   CR   +    E+  E D        +   E+D+   +       E + +W 
Sbjct: 145 ALHNFLRKECRSDEADFPDEVGNEGDVVNNEGNAMNTNEIDNEEPLEAQKQDRENTNMW- 204

Query: 279 AFRDSMAQRMFDTAQN 281
             R SMA+ M+  A N
Sbjct: 205 --RKSMAEDMWKDATN 207

[Close]

BLAST of Sed0016128 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-23
Identity = 79/221 (35.75%), Postives = 111/221 (50.23%), Query Frame = 0


Query: 2   VAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTA--IIRCHDI-------LFKKPE 61
           VAMFL I  H+   R V   F R+ ETV R F+ VLTA  ++ C  I       L++ PE
Sbjct: 102 VAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQELYRIPE 161

Query: 62  PIQPSCTDSR-WKWFE------------LQVPVENRASFRNRKSIITTNVLAVWAPSGEF 121
            +Q    D R W +F             ++V  + +  + NR    + N++A+      F
Sbjct: 162 RLQ---VDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLF 221

Query: 122 IYVLAGWEGSAADSRVLRDALSRNNGFQVPHG-YYYLCDAGYPNDDGFLAPYRGE----- 181
            Y+  G  GS  D+ VL+ A   ++ F +P    YYL D+GYPN  G LAPYR       
Sbjct: 222 TYIWNGAPGSCYDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVV 281

Query: 182 RYHLSNWRGRNPPRNPREFFNKAHSSARNIIERAFGALKNR 195
           RYH+S +     PRN  E FN+ H+S R++IER F   KN+
Sbjct: 282 RYHMSQFYYGPRPRNKHELFNQCHTSLRSVIERTFRIWKNK 319

[Close]

BLAST of Sed0016128 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 4.7e-11
Identity = 53/153 (34.64%), Postives = 72/153 (47.06%), Query Frame = 0


Query: 2   VAMFLHIMAHDVKNRVVRKIFTRSGETVSRHFQFVLTAIIRCHDILFKKPEPIQPSCTDS 61
           VA+FL I A +   R +   F  + ET+ R F  VL A+ R   + + +P  ++     S
Sbjct: 60  VAIFLIICASNDTQRDIALRFGHAQETIWRKFHDVLKAMERL-AVEYIRPRKVEELRAIS 119

Query: 62  RWKWFELQVPVENRASFRNRKSIITTNVLAVWAPSGEFIYVLAGWEGSAADSRVLRDALS 121
                 LQ          +   I + NVLA+      F Y   G  GS  D+RVL  A+S
Sbjct: 120 N----RLQDDTRYWPFLMDLLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAIS 179

Query: 122 RNNGFQV-PHGYYYLCDAGYPNDDGFLAPYRGE 154
            +  F V P   YYL D+GY N  G+LAPYR E
Sbjct: 180 DDPLFHVPPDSKYYLVDSGYANKRGYLAPYRRE 207

[Close]

BLAST of Sed0016128 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-11
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 112 DSRVLRDALSRNNGFQVPH---GYYYLCDAGYPNDDGFLAPYRGERYHLSNWRGRNPPRN 171
           D++VL+   +RN  F  PH     YYL ++ YP   G+L P+R   YHL  +    PP  
Sbjct: 73  DTKVLK-YCARNESFS-PHPSNRKYYLVNSVYPTTTGYLGPHRRILYHLGQFGRGGPPVT 132

Query: 172 PREFFNKAHSSARNIIERAFGALKNRWAILRH 201
            +E FN+ H   R++I+R FG  K +W IL H
Sbjct: 133 VQELFNRKHLDLRSVIDRTFGVWKAKWRILDH 162

The following BLAST results are available for this feature:

BLAST of Sed0016128 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046727.1	3.6e-90	59.03	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0035620.1	1.1e-89	58.68	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0051057.1	1.5e-88	57.99	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048361.1	2.0e-88	58.33	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047510.1	2.0e-88	57.99	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0016128 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2U3	5.9e-11	29.82	Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1	[more]
Q6AZB8	1.7e-05	26.71	Putative nuclease HARBI1 OS=Danio rerio OX=7955 GN=harbi1 PE=2 SV=1	[more]

BLAST of Sed0016128 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXW1	1.7e-90	59.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	5.1e-90	58.68	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9H2	7.3e-89	57.99	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TWH8	9.6e-89	57.99	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U476	9.6e-89	58.33	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0016128 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.4e-39	39.66	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G35695.1	6.0e-27	38.78	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	1.1e-23	35.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	4.7e-11	34.64	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G10890.1	6.1e-11	39.13	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 70..221 e-value: 4.1E-26 score: 91.5
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 2..271
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 2..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016128.1	Sed0016128.1	mRNA