Sed0016063 (gene) Chayote v1

Overview
NameSed0016063
Typegene
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S19
LocationLG07: 3102690 .. 3104398 (-)
RNA-Seq ExpressionSed0016063
SyntenySed0016063
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCGGAATATAAATACAGAACTCTTCTTGAGAAACCCTAGAATTTGAGAAAGGCGGAAATCCTAATTCTGCAATCGGAGCTTTTGCCGCCCTTTGCTCAAAGAATCGAACAGCCATGGCCACTGCTAAGACCGTCAAGGATGTTTCTCCTCACGAGTTCGTCAAGGCTTACGCCGCTCATCTGAAGCGATCTGGAAAGGTATCGATTCAAATCTGTTTTCGGCATTTTTTTGATTTGATTGCCGATAGAACACTTGATTTTCGATTGAAAACACCATGTTAGGGTTTCGATTCTGAAGTTCGGACGTTTCCAGCTCTGTTGTGAAGTCTACACTGTTCTGTTCTTGTTATTTTGTCTTCCATTTTACGTTGCCTTGTTATCATTATCATTCAAACAAGCAGTTTGCGAGTTTTAGCTGTAGAAGTTTCGATTTACACGCTCTTAATTGTGTTTAACCTAAATGCGATCTTGAATTACCTACTAGAGTTGTTTTTTCCATTTCATATTAGAAATCTTGTTCTTTTCTTTCTCGCAGTCACATTTGCCCTCCACTGTTTCTGGGATATTGTAGATATTGTAGTCATGTTCTCGGTTTTTGGATTTTTTTTTTTTGTTTTTAATGTTTTATGGAGATTGTATGTTATGGGATTTAATTAGTTTAAAGGATCTTTTTGGCCATATGGAAGAATTTCACGCTATCAATTTACATAAGTATTTTTCTTTTCTCCCTGATTCGGGTTATCCGTTTTTATTCGTTGTCTTGATTTTTGATTGGTTGAAGCTTTATATATGACTCTTGATTAGTTGCAACAATTTTTTTTGCTAAAAAATCAATTATGTTCTGCTTAGTGTGGTAATTATTTTCCCCCATGATTATGAGCAGGTTGAGCTTCCTCCATGGACGGACATTGTGAAGACTGCAAGATTCAAGGAGCTTGCACCATATGATGCAGATTGGTATTTTGTGAGAGCTGGTTCGTACCATCTTTTCTTGTTTTTGATTCCCATGTGTTTGTAAACCGAACCGCTTTAAACTAATTTTTTACCACCAGTATGCTGTGTTTGTGGTATTCTTATGATCACTTTTTCGATATCATTCAGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGGGCATTCAAGAGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGCGGTGCCATTGCCCGCCACATTTTACAACAGTTGCAGGAATTGAACATTGTTGATGTTGACCCAAAGGGGTGAGTACAAAATTCTTATAGTTAGCTTAATCTCTCTACTTCCTGATGTTATATATGTGTGATTTATCCTGTTTTCATGTCATTTGCGACAACAGTAATGTTGTCTAATGCTGTGTTTTCTATCTGGTTGGGTTTGCAGTGGACGAAGAATTACTTCTAGCGGTCGACGAGACCTCGATCAAGTTGCTGGTAGGATTGTTGTTGCCCCTTGATTGATCAATTACTCGTTTGGTTATTTAGAGACTGATGTTTTGCTGTTGAGATACAATTTCTTATGAGCCATTAAAATTTTGAATTTAGCTGTTGAAAGGTTTTTCAGATGAAGATCTCAAGTTTTCTCACGGTTTTTGAAGGTTCTAATGTTAATTTACTACTTTTGTTATACATCTTATGCGTTGAGATATCGTTAACCTCATTCTTATT

mRNA sequence

TTTCGGAATATAAATACAGAACTCTTCTTGAGAAACCCTAGAATTTGAGAAAGGCGGAAATCCTAATTCTGCAATCGGAGCTTTTGCCGCCCTTTGCTCAAAGAATCGAACAGCCATGGCCACTGCTAAGACCGTCAAGGATGTTTCTCCTCACGAGTTCGTCAAGGCTTACGCCGCTCATCTGAAGCGATCTGGAAAGGTTGAGCTTCCTCCATGGACGGACATTGTGAAGACTGCAAGATTCAAGGAGCTTGCACCATATGATGCAGATTGGTATTTTGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGGGCATTCAAGAGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGCGGTGCCATTGCCCGCCACATTTTACAACAGTTGCAGGAATTGAACATTGTTGATGTTGACCCAAAGGGTGGACGAAGAATTACTTCTAGCGGTCGACGAGACCTCGATCAAGTTGCTGGTAGGATTGTTGTTGCCCCTTGATTGATCAATTACTCGTTTGGTTATTTAGAGACTGATGTTTTGCTGTTGAGATACAATTTCTTATGAGCCATTAAAATTTTGAATTTAGCTGTTGAAAGGTTTTTCAGATGAAGATCTCAAGTTTTCTCACGGTTTTTGAAGGTTCTAATGTTAATTTACTACTTTTGTTATACATCTTATGCGTTGAGATATCGTTAACCTCATTCTTATT

Coding sequence (CDS)

ATGGCCACTGCTAAGACCGTCAAGGATGTTTCTCCTCACGAGTTCGTCAAGGCTTACGCCGCTCATCTGAAGCGATCTGGAAAGGTTGAGCTTCCTCCATGGACGGACATTGTGAAGACTGCAAGATTCAAGGAGCTTGCACCATATGATGCAGATTGGTATTTTGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGGGCATTCAAGAGGATTTATGGTGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGCGGTGCCATTGCCCGCCACATTTTACAACAGTTGCAGGAATTGAACATTGTTGATGTTGACCCAAAGGGTGGACGAAGAATTACTTCTAGCGGTCGACGAGACCTCGATCAAGTTGCTGGTAGGATTGTTGTTGCCCCTTGA

Protein sequence

MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Homology
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BLAST of Sed0016063 vs. NCBI nr
Match: XP_004141465.1 (40S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S ribosomal protein S19-3 [Cucumis melo] >XP_038890519.1 40S ribosomal protein S19-3 [Benincasa hispida] >KAA0039442.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa] >KGN52503.1 hypothetical protein Csa_008239 [Cucumis sativus] >TYK00631.1 40S ribosomal protein S19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWY++RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Sed0016063 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6602529.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033203.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.5 bits (737), Expect = 3.2e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Sed0016063 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.3 bits (734), Expect = 7.0e-74
Identity = 139/143 (97.20%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAAS
Sbjct: 542 MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 601

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 602 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 661

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 662 GRRITSSGRRDLDQVAGRIVVAP 684

[Close]
BLAST of Sed0016063 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.3 bits (734), Expect = 7.0e-74
Identity = 139/143 (97.20%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Sed0016063 vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo] >KAG7016113.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.3 bits (734), Expect = 7.0e-74
Identity = 139/143 (97.20%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Sed0016063 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.0e-67
Identity = 120/142 (84.51%), Postives = 132/142 (92.96%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWY++RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ +NIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Sed0016063 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.3e-67
Identity = 119/143 (83.22%), Postives = 133/143 (93.01%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWY++RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ +NIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Sed0016063 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.3e-66
Identity = 118/139 (84.89%), Postives = 131/139 (94.24%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWY++RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ ++IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of Sed0016063 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.4e-62
Identity = 110/140 (78.57%), Postives = 128/140 (91.43%), Query Frame = 0 

Query: 2   ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASM 61
           +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYD DWY+ RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKGG 121
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ++ I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 RRITSSGRRDLDQVAGRIVV 142
           R ITS GRRDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDV 143

[Close]
BLAST of Sed0016063 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-45
Identity = 78/134 (58.21%), Postives = 109/134 (81.34%), Query Frame = 0 

Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+ DWYF+RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKGGRRIT 125
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ L IV+ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 126 SSGRRDLDQVAGRI 140
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]
BLAST of Sed0016063 vs. ExPASy TrEMBL
Match: A0A5A7T7J1 (40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002520 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.0e-75
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWY++RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Sed0016063 vs. ExPASy TrEMBL
Match: A0A0A0KSI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.0e-75
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWY++RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Sed0016063 vs. ExPASy TrEMBL
Match: A0A1S3CB93 (40S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.0e-75
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWY++RAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYYLRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Sed0016063 vs. ExPASy TrEMBL
Match: A0A6J1JTL0 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Sed0016063 vs. ExPASy TrEMBL
Match: A0A6J1EBL3 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYD DWY+VRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE+NIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of Sed0016063 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 257.3 bits (656), Expect = 7.3e-69
Identity = 120/142 (84.51%), Postives = 132/142 (92.96%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYD DWY++RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ +NIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of Sed0016063 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 256.9 bits (655), Expect = 9.5e-69
Identity = 119/143 (83.22%), Postives = 133/143 (93.01%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYD DWY++RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ +NIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of Sed0016063 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 251.9 bits (642), Expect = 3.1e-67
Identity = 118/139 (84.89%), Postives = 131/139 (94.24%), Query Frame = 0 

Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDADWYFVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYD DWY++RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQELNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ ++IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

The following BLAST results are available for this feature:
BLAST of Sed0016063 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141465.11.9e-7497.9040S ribosomal protein S19-3 [Cucumis sativus] >XP_008459377.1 PREDICTED: 40S rib... [more]
XP_022923365.13.2e-7497.9040S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso... [more]
KAG6593129.17.0e-7497.20Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022954406.17.0e-7497.2040S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso... [more]
XP_022938991.17.0e-7497.2040S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal p... [more]
BLAST of Sed0016063 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FNP81.0e-6784.5140S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1[more]
Q9SGA61.3e-6783.2240S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1[more]
Q9LF304.3e-6684.8940S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1[more]
P409786.4e-6278.5740S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=... [more]
Q946131.9e-4558.2140S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1[more]
BLAST of Sed0016063 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T7J19.0e-7597.9040S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A0A0KSI39.0e-7597.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638420 PE=3 SV=1[more]
A0A1S3CB939.0e-7597.9040S ribosomal protein S19-3 OS=Cucumis melo OX=3656 GN=LOC103498526 PE=3 SV=1[more]
A0A6J1JTL01.5e-7497.9040S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=... [more]
A0A6J1EBL31.5e-7497.9040S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 P... [more]
BLAST of Sed0016063 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G61170.17.3e-6984.51Ribosomal protein S19e family protein [more]
AT3G02080.19.5e-6983.22Ribosomal protein S19e family protein [more]
AT5G15520.13.1e-6784.89Ribosomal protein S19e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..142
e-value: 7.1E-83
score: 291.3
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 6..140
e-value: 3.0E-55
score: 185.6
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 3..142
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..142
e-value: 1.0E-69
score: 235.4
NoneNo IPR availablePANTHERPTHR11710:SF2040S RIBOSOMAL PROTEIN S19-3coord: 3..142
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 6..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0016063.1Sed0016063.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome