Sed0016026 (gene) Chayote v1

Overview


Name	Sed0016026
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein GL2-INTERACTING REPRESSOR 1
Location	LG03: 27075780 .. 27077270 (+)
RNA-Seq Expression	Sed0016026
Synteny	Sed0016026

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAGTGTTCACAAGTTCTCCTCTGCTTTTCCTCTATTTCTAAATCACTTTTCAGGTGACCTTTCCAATTCCCTTGATCATCTACATGTCAATCTTTTTTTTTCGTAATCATTTGGTTTTTGTTTTATTTTTTTGAAAACTTAACTTCTTTTTTCTAATTTATCTATGCTAATTTTTGTGTTTTTGTAAATTATGTGAACTTCGAACTCAATTTCAAAAAAAGAACAAGAGCAAAACAAAACAAACGAAGATTTTTTTTTTTTTTTTTTTTTTAGTACAAATTGGGGAAGATTAACTACAAATCTTTCACACGTATATTACTCTCAAATAAATAAGAGTGAAATACCGATTCTTGAGTGATCGTGGTGTTAAACCAGATTTCCACTAAATAAAAATATATATTTTTTGTTTGAGTTCAATGATAGATGGGGATAAAGGATTTTTAACCTTAACTATTAAGTTTTATATAATTATATAATTTCATTAAATGTCTGCTAAGACAGTAAAATAGTTTTTTATAACACCTCTTTAATTTTTACTCTCTATAAAATTGCAAAATGTATTTGTTTTTCTTTCAAAAATATGGTTTAGTGTTAAAAAATACATATTATTGACCGGTTAGGGGTTGGAATTTTGCAAATTTATAGAGAGTAAAACTCCCCTATATATAAACTGTACATTTTGCTTATTTGACTAAAAAATTTATAAAAAAAATTTCCTATGTGTGTTTTAGAGATGAATGAAAGGAGCAGCAACGGTGGAGGAGGAGGAGCGGCACCAAAGCTGGAGTTGAAACTGAACCTGTCGCCACCGAGAGGGGCGAACAGAGGAGTGGAGTCACCAAGCCGGTTGGCGAGCGTGTCGCCGCCAAGTTCGTGCGTGTCATCGGAAGTGGCAGGGACAGGATCGTATTCAAACAGCCCCGAAGCGACGTCGATGATGGTGGTCGGATGTCCAAGGTGTCTGATGTACGTGATGCTGTCGGAGGAAGACCCAAAATGTCCGAAATGCAAAAGCACTGTTCTTCTTGATGTTCTCCACCATAAAACCATTGTCAAAACCAGGACATCTTAGACACACAACAATCCAAATCCACTGCTCTAGAGACTGAAAAACAAGATCCAAAAAGTTATTTTTTTTTAATGAAATTTTAGAAAGTAGTTATTATTATTATTATTTAAGTTTCTTGATAGGGCAGAAGGGAAGAGGATTTTGGAGTTCTTTTTGCAAGAATTTGTTGGGATCGGATCTTTTTCCGTGTCTTTTAGCACAAAGACTAGGATGGGTTTGGAGCACCGATTTGGTTATGATAGACGGAAGGTTATAATAAACGGGGGTTATGATAAACGGTGGATTATTATAAATGGTGTTTGAGGGGCAAGTTATTATAACATGGATTATGATAAACGGTGTTTGAGGAGCTGGTTATGTAACAAAAAGTAATATAGGTAAGGTTTATATAAACGGACACGTAGGTTTAAATAAACGGG

mRNA sequence

CCAAAGTGTTCACAAGTTCTCCTCTGCTTTTCCTCTATTTCTAAATCACTTTTCAGATGAATGAAAGGAGCAGCAACGGTGGAGGAGGAGGAGCGGCACCAAAGCTGGAGTTGAAACTGAACCTGTCGCCACCGAGAGGGGCGAACAGAGGAGTGGAGTCACCAAGCCGGTTGGCGAGCGTGTCGCCGCCAAGTTCGTGCGTGTCATCGGAAGTGGCAGGGACAGGATCGTATTCAAACAGCCCCGAAGCGACGTCGATGATGGTGGTCGGATGTCCAAGGTGTCTGATGTACGTGATGCTGTCGGAGGAAGACCCAAAATGTCCGAAATGCAAAAGCACTGTTCTTCTTGATGTTCTCCACCATAAAACCATTGTCAAAACCAGGACATCTTAGACACACAACAATCCAAATCCACTGCTCTAGAGACTGAAAAACAAGATCCAAAAAGTTATTTTTTTTTAATGAAATTTTAGAAAGTAGTTATTATTATTATTATTTAAGTTTCTTGATAGGGCAGAAGGGAAGAGGATTTTGGAGTTCTTTTTGCAAGAATTTGTTGGGATCGGATCTTTTTCCGTGTCTTTTAGCACAAAGACTAGGATGGGTTTGGAGCACCGATTTGGTTATGATAGACGGAAGGTTATAATAAACGGGGGTTATGATAAACGGTGGATTATTATAAATGGTGTTTGAGGGGCAAGTTATTATAACATGGATTATGATAAACGGTGTTTGAGGAGCTGGTTATGTAACAAAAAGTAATATAGGTAAGGTTTATATAAACGGACACGTAGGTTTAAATAAACGGG

Coding sequence (CDS)

ATGAATGAAAGGAGCAGCAACGGTGGAGGAGGAGGAGCGGCACCAAAGCTGGAGTTGAAACTGAACCTGTCGCCACCGAGAGGGGCGAACAGAGGAGTGGAGTCACCAAGCCGGTTGGCGAGCGTGTCGCCGCCAAGTTCGTGCGTGTCATCGGAAGTGGCAGGGACAGGATCGTATTCAAACAGCCCCGAAGCGACGTCGATGATGGTGGTCGGATGTCCAAGGTGTCTGATGTACGTGATGCTGTCGGAGGAAGACCCAAAATGTCCGAAATGCAAAAGCACTGTTCTTCTTGATGTTCTCCACCATAAAACCATTGTCAAAACCAGGACATCTTAG

Protein sequence

MNERSSNGGGGGAAPKLELKLNLSPPRGANRGVESPSRLASVSPPSSCVSSEVAGTGSYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKTRTS

Homology

[Close]

BLAST of Sed0016026 vs. NCBI nr
Match: XP_022925998.1 (uncharacterized protein LOC111433248 [Cucurbita moschata] >KAG6604328.1 Protein salt-induced and EIN3/EIL1-dependent 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034480.1 hypothetical protein SDJN02_04209, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 7.8e-36
Identity = 92/117 (78.63%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 1   MNERSSNGGGG-GAAPKLELKLNLSPPRGANRGVESPSRLASV---SPPSSCVSSE---V 60
           MN R+S GGGG  AAPKLELKLNLSPPR ANRGVESPSR A+V   SPPSSCVSSE    
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPR-ANRGVESPSRSATVSPTSPPSSCVSSEEEMT 60

Query: 61  AGTGSYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKTR 111
            G   YS+SPEATSMM+VGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH  + VKTR
Sbjct: 61  VGRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTR 116

[Close]

BLAST of Sed0016026 vs. NCBI nr
Match: XP_023543892.1 (uncharacterized protein LOC111803624 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-35
Identity = 92/118 (77.97%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MNERSSNGGGGG--AAPKLELKLNLSPPRGANRGVESPSRLASV---SPPSSCVSSE--- 60
           MN R+S G GGG  AAPKLELKLNLSPPR ANRGVESPSR A+V   SPPSSCVSSE   
Sbjct: 1   MNRRNSGGRGGGAAAAPKLELKLNLSPPR-ANRGVESPSRSATVSPTSPPSSCVSSEEEM 60

Query: 61  VAGTGSYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKTR 111
             G   YS+SPEATSMM+VGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH  + VKTR
Sbjct: 61  TVGRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTR 117

[Close]

BLAST of Sed0016026 vs. NCBI nr
Match: XP_022979077.1 (uncharacterized protein LOC111478822 [Cucurbita maxima])

HSP 1 Score: 158.7 bits (400), Expect = 3.0e-35
Identity = 91/117 (77.78%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MNERSSNGGGG-GAAPKLELKLNLSPPRGANRGVESPSRLASV---SPPSSCVSSE---V 60
           MN R+S GGGG  AAPKLELKLNLSPPR ANRGVESPSR A+V   SPPSSCVSSE    
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPR-ANRGVESPSRSATVSPTSPPSSCVSSEEEMT 60

Query: 61  AGTGSYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKTR 111
            G   YS+SPEATSMM+VGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH  + VK R
Sbjct: 61  VGRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKNR 116

[Close]

BLAST of Sed0016026 vs. NCBI nr
Match: XP_004143338.1 (uncharacterized protein LOC101217127 [Cucumis sativus] >KAA0025228.1 uncharacterized protein E6C27_scaffold541G00770 [Cucumis melo var. makuwa] >KGN48289.1 hypothetical protein Csa_003966 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 90/113 (79.65%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MNERSSNGGGGGAAPKLELKLNLSPPRGANRGVESPSRLASV---SPPSSCVSSEVAGTG 60
           MN R+S GGGG A PKLELKLNLSPPR ANRGVESPSR A+V   SPPSSCVSSE     
Sbjct: 1   MNRRNS-GGGGAATPKLELKLNLSPPR-ANRGVESPSRSATVSPTSPPSSCVSSE--EEM 60

Query: 61  SYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKTR 111
            YSNSPE TSMM+VGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH    VKTR
Sbjct: 61  RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTR 109

[Close]

BLAST of Sed0016026 vs. NCBI nr
Match: XP_023518522.1 (uncharacterized protein LOC111781998 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 89/116 (76.72%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 1   MNERSSNGGGGGAAPKLELKLNLSPPR-GANRGVESPSRLASV---SPPSSCVSSEVAGT 60
           MN R+S  GG   APKLELKLNLSPPR G NRGVESP+R A+V   SPPSSCVSSE A  
Sbjct: 28  MNRRNSREGG---APKLELKLNLSPPRGGGNRGVESPNRSATVSPTSPPSSCVSSEAA-- 87

Query: 61  GSYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKTRTS 113
            SYSNSPEA +MM+VGCPRCLMYVMLSE+DPKCPKCKSTVLLDVLH  T VKTR S
Sbjct: 88  RSYSNSPEAATMMLVGCPRCLMYVMLSEQDPKCPKCKSTVLLDVLHDNTAVKTRQS 138

[Close]

BLAST of Sed0016026 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-26
Identity = 67/96 (69.79%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 14  APKLELKLNLSPPRGANRG-VESPSRLAS---VSPPSSCVSSEV---AGTGSYSNSPEAT 73
           +PKLELKLNLSPP  + R  V SPSR A+    SPPSSCVSSE+     +  YS SPE T
Sbjct: 5   SPKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETT 64

Query: 74  SMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH 103
           SM++VGCPRCLMYVMLSE+DPKCPKCKSTVLLD LH
Sbjct: 65  SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLH 100

[Close]

BLAST of Sed0016026 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.1e-20
Identity = 59/112 (52.68%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 1   MNERSSNGGGGGAAPKLELKLNLSPPRGANRG---VESPSRLASVSPPSSCVSSEVAGTG 60
           M+ R+ NG      PKLEL+LNLSPP         V SP+R ++ + PSSCVSSE     
Sbjct: 1   MSRRNKNG------PKLELRLNLSPPPSQASQMSLVRSPNR-SNTTSPSSCVSSET---- 60

Query: 61  SYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKT 110
           +   +   TSM++VGCPRCLMYVMLS++DPKCPKCKSTVLLD L       T
Sbjct: 61  NQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAAT 101

[Close]

BLAST of Sed0016026 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-09
Identity = 44/102 (43.14%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 1   MNERSSNGGGGGAAPKLELKLNLSPPRGANRGVESPSRLASVSPPSSCVSSEVAGTGSYS 60
           MN+ +++  G      L+LKLN+SP           S L + S  SS  S E  G G   
Sbjct: 1   MNQEAASNLG------LDLKLNISP--------SLDSSLLTESSSSSLCSEEAEGGGG-- 60

Query: 61  NSPEATSMMVVGCPRCLMYVMLS-EEDPKCPKCKSTVLLDVL 102
              EA SM+VVGCP C+MY++ S E DP+CP+C S VLLD L
Sbjct: 61  ---EAKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

[Close]

BLAST of Sed0016026 vs. ExPASy TrEMBL
Match: A0A6J1EGT8 (uncharacterized protein LOC111433248 OS=Cucurbita moschata OX=3662 GN=LOC111433248 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.8e-36
Identity = 92/117 (78.63%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 1   MNERSSNGGGG-GAAPKLELKLNLSPPRGANRGVESPSRLASV---SPPSSCVSSE---V 60
           MN R+S GGGG  AAPKLELKLNLSPPR ANRGVESPSR A+V   SPPSSCVSSE    
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPR-ANRGVESPSRSATVSPTSPPSSCVSSEEEMT 60

Query: 61  AGTGSYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKTR 111
            G   YS+SPEATSMM+VGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH  + VKTR
Sbjct: 61  VGRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTR 116

[Close]

BLAST of Sed0016026 vs. ExPASy TrEMBL
Match: A0A6J1IMT5 (uncharacterized protein LOC111478822 OS=Cucurbita maxima OX=3661 GN=LOC111478822 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 91/117 (77.78%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MNERSSNGGGG-GAAPKLELKLNLSPPRGANRGVESPSRLASV---SPPSSCVSSE---V 60
           MN R+S GGGG  AAPKLELKLNLSPPR ANRGVESPSR A+V   SPPSSCVSSE    
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPR-ANRGVESPSRSATVSPTSPPSSCVSSEEEMT 60

Query: 61  AGTGSYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKTR 111
            G   YS+SPEATSMM+VGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH  + VK R
Sbjct: 61  VGRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKNR 116

[Close]

BLAST of Sed0016026 vs. ExPASy TrEMBL
Match: A0A5A7SGG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00770 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.4e-35
Identity = 90/113 (79.65%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MNERSSNGGGGGAAPKLELKLNLSPPRGANRGVESPSRLASV---SPPSSCVSSEVAGTG 60
           MN R+S GGGG A PKLELKLNLSPPR ANRGVESPSR A+V   SPPSSCVSSE     
Sbjct: 1   MNRRNS-GGGGAATPKLELKLNLSPPR-ANRGVESPSRSATVSPTSPPSSCVSSE--EEM 60

Query: 61  SYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKTR 111
            YSNSPE TSMM+VGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH    VKTR
Sbjct: 61  RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTR 109

[Close]

BLAST of Sed0016026 vs. ExPASy TrEMBL
Match: A0A0A0KHJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454370 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.4e-35
Identity = 90/113 (79.65%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MNERSSNGGGGGAAPKLELKLNLSPPRGANRGVESPSRLASV---SPPSSCVSSEVAGTG 60
           MN R+S GGGG A PKLELKLNLSPPR ANRGVESPSR A+V   SPPSSCVSSE     
Sbjct: 1   MNRRNS-GGGGAATPKLELKLNLSPPR-ANRGVESPSRSATVSPTSPPSSCVSSE--EEM 60

Query: 61  SYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKTR 111
            YSNSPE TSMM+VGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH    VKTR
Sbjct: 61  RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTR 109

[Close]

BLAST of Sed0016026 vs. ExPASy TrEMBL
Match: A0A1S3CHA8 (uncharacterized protein LOC103500924 OS=Cucumis melo OX=3656 GN=LOC103500924 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.1e-34
Identity = 89/112 (79.46%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 1   MNERSSNGGGGGAAPKLELKLNLSPPRGANRGVESPSRLASV---SPPSSCVSSEVAGTG 60
           MN R+S GGGG A PKLELKLNLSPPR ANRGVESPSR A+V   SPPSSCVSSE     
Sbjct: 1   MNRRNS-GGGGAATPKLELKLNLSPPR-ANRGVESPSRSATVSPTSPPSSCVSSE--EEM 60

Query: 61  SYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKT 110
            YSNSPE TSMM+VGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH    VKT
Sbjct: 61  RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKT 108

[Close]

BLAST of Sed0016026 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-27
Identity = 67/96 (69.79%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 14  APKLELKLNLSPPRGANRG-VESPSRLAS---VSPPSSCVSSEV---AGTGSYSNSPEAT 73
           +PKLELKLNLSPP  + R  V SPSR A+    SPPSSCVSSE+     +  YS SPE T
Sbjct: 5   SPKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETT 64

Query: 74  SMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLH 103
           SM++VGCPRCLMYVMLSE+DPKCPKCKSTVLLD LH
Sbjct: 65  SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLH 100

[Close]

BLAST of Sed0016026 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 5.8e-21
Identity = 59/112 (52.68%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 1   MNERSSNGGGGGAAPKLELKLNLSPPRGANRG---VESPSRLASVSPPSSCVSSEVAGTG 60
           M+ R+ NG      PKLEL+LNLSPP         V SP+R ++ + PSSCVSSE     
Sbjct: 1   MSRRNKNG------PKLELRLNLSPPPSQASQMSLVRSPNR-SNTTSPSSCVSSET---- 60

Query: 61  SYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHHKTIVKT 110
           +   +   TSM++VGCPRCLMYVMLS++DPKCPKCKSTVLLD L       T
Sbjct: 61  NQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAAT 101

[Close]

BLAST of Sed0016026 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 44/102 (43.14%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 1   MNERSSNGGGGGAAPKLELKLNLSPPRGANRGVESPSRLASVSPPSSCVSSEVAGTGSYS 60
           MN+ +++  G      L+LKLN+SP           S L + S  SS  S E  G G   
Sbjct: 1   MNQEAASNLG------LDLKLNISP--------SLDSSLLTESSSSSLCSEEAEGGGG-- 60

Query: 61  NSPEATSMMVVGCPRCLMYVMLS-EEDPKCPKCKSTVLLDVL 102
              EA SM+VVGCP C+MY++ S E DP+CP+C S VLLD L
Sbjct: 61  ---EAKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

[Close]

BLAST of Sed0016026 vs. TAIR 10
Match: AT3G52561.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 4  RSSNGGGGGAAPKLELKLNLSPPRGANRGVESPSRLASVSPPSSC------VSSEVAGTG 63
          R+ NG  G   P      ++    G   G  SPS   S S  +SC      V  EVA   
Sbjct: 2  RNKNGKRGSVEPSARTVASV-VANGRFEG-RSPSSDTS-SSQNSCLTRTEEVKEEVA--S 61

Query: 64 SYSNSPEATSMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLL 99
          S+ +  EA  M+V+GC  C+MYVM+ +E  +CPKCK T L+
Sbjct: 62 SWVDEEEAPEMVVMGCRSCMMYVMVLQERQRCPKCKCTDLI 97

[Close]

BLAST of Sed0016026 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = 0


Query: 57  GSYSNSPEAT---SMMVVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVL 102
           G Y  +  AT   S +  GCP CL YV +++ +PKCP+C S V L  +
Sbjct: 201 GVYDGTASATVAASQVAAGCPGCLSYVFVAKNNPKCPRCHSFVPLPAM 248

The following BLAST results are available for this feature:

BLAST of Sed0016026 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925998.1	7.8e-36	78.63	uncharacterized protein LOC111433248 [Cucurbita moschata] >KAG6604328.1 Protein ...	[more]
XP_023543892.1	1.7e-35	77.97	uncharacterized protein LOC111803624 [Cucurbita pepo subsp. pepo]	[more]
XP_022979077.1	3.0e-35	77.78	uncharacterized protein LOC111478822 [Cucurbita maxima]	[more]
XP_004143338.1	1.1e-34	79.65	uncharacterized protein LOC101217127 [Cucumis sativus] >KAA0025228.1 uncharacter...	[more]
XP_023518522.1	1.9e-34	76.72	uncharacterized protein LOC111781998 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0016026 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNI1	2.0e-26	69.79	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9SRN4	8.1e-20	52.68	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]
Q9FMS4	2.2e-09	43.14	Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Sed0016026 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EGT8	3.8e-36	78.63	uncharacterized protein LOC111433248 OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A6J1IMT5	1.4e-35	77.78	uncharacterized protein LOC111478822 OS=Cucurbita maxima OX=3661 GN=LOC111478822...	[more]
A0A5A7SGG8	5.4e-35	79.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KHJ4	5.4e-35	79.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454370 PE=4 SV=1	[more]
A0A1S3CHA8	2.1e-34	79.46	uncharacterized protein LOC103500924 OS=Cucumis melo OX=3656 GN=LOC103500924 PE=...	[more]

BLAST of Sed0016026 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06270.1	1.4e-27	69.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G11600.1	5.8e-21	52.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G22270.1	1.6e-10	43.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G52561.1	1.3e-04	37.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G16500.1	1.7e-04	41.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 10..111
None	No IPR available	PANTHER	PTHR33177:SF40	SUBFAMILY NOT NAMED	coord: 10..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016026.1	Sed0016026.1	mRNA
Sed0016026.2	Sed0016026.2	mRNA