Sed0016023 (gene) Chayote v1

Overview


Name	Sed0016023
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat-containing protein
Location	LG13: 19554884 .. 19563508 (+)
RNA-Seq Expression	Sed0016023
Synteny	Sed0016023

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGATTTAAATCTTCATTTCTAATTTCTCACTTAGTTTAGTAGAGTCCTAAACCCTCAACCAAAAACCCTCTCTGCCCTTTCTCTTCCATCAGTGAACTCGAACCGCAGTACTCCAATGGCAATTCGGGTATTTTCGAGGTCGAAATTCCTCAATCTTTCTTCCCAACTCCTCCGAGCCCTAACGAGTAAACCCATTAGCGATATCCCATCACCAGTGAAATCGCCGATCGCCGGATTTCAGCCGGAGTCGAGCCGACCCACATGCGGATTCCGGCTATTTCACGACGGCCGGCCACGTGGGCCCCTCTGGAGAAGCCGGAAATCAATTGGGAAAGAAGCCCTTTTCGTTATTCAGGGATTGAAGCGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATTAGGAGCCATGTTTCCAGGCTCTTGAAAATGGACATGATTGCTGTTCTTGGTGAGCTTGAGCGCCAGGAAGAGGTTGCTTTGGGCGTCAAGGTTTCTTTCCCTTTCCATTTTTTTTAAATTTCTGTTCAGCTTATTAGGTGCAGCTCGATTTTGATTATTTTCATGAGACAAACTGAATGACCCTATAGGGTGTGTTTGTTTTTGGTAGAAAAGAGTGGAGTGGAAGAGAATGAAGTGGTCAATTGTAGTTTGGAGTGGTTAAATACTCGATTGGAGATTAAGGTTAAGAGCAGTGGAGTAGTTAGCTACTTGTTTGCAGATTGTGGTTAATAGTGGTCGAGTAATAAATTTGATGTGAAGTTTAATAAAATTTAATATGAAATTTGATAGAGGGGTTGAAGAATAGCTAACGGTGGTTGTTTACTACAAAAAAACAAACGGGGTTTTTGAGGAGACCTCTCCTCGTGTCCAAAAAACAAATATACCCATAATGTTTAGTTGTCAAGCAAATTGAAAAAATTAATTACTATATAGGTGGTCGTGGCATTTGAACTTATAACCTCTTAGATCTCAACAGACAAATCCATGATTATTATTCCCCTTCCTTTCTTTTATATGTTCTCTTTTTTTTGTGGGGTTTTGATTTTTCTTCATGGGGTGTCTTAGAAATTGATAATGGGATTCTGTAAAATGTGCATATTATCCTTGTCTTTCTCTTGTTTGTTGTTACTATAAGTTTTCAGTAACCTTGTAAGTTGATGCTCTGTGCTTTTGCTTCTTAATTTTTATGCTATTACTTATGAGTTTCATTTGGCGAATGAATAACTTTGCTAGGGCTGGATTTAATCTTTCTGTTTTGATCTTGGGTTTCTTAGAATCTGACTCTAGTATGAATGTGGTGTTCTGGACTTTTGGACTGCCTTTTTCGTGGACCTATTGTGTGAAGCATGCTTTGAGGTCATAAACTAATTAAATTCATGTATTGATGTTCCTTACAATGATATACTGATTTCTTTTTTCCGCTTCCTATTGATTAAAAGAGTTTTAGGAACCACGAGATTATAGTTCAATTCAAGCTGGCCAAACACTGTTTTTTTAAGTTTTTTTTACAACTAAATATCGTAGGTTAGGCAGTTGTCTCGTAAGAATAATTGAGATGCACGTAATATGATCGGGATATTCAAAAAAAAAAAAAGAAAGGTTAATTTATGTTGAATGCTGCCCCAAGCAATCGAGTTTACTTTGTTTTTTTTTTGGATAAGAAACAATTTCATTGATGATATGAAATTAAGCCATAAAGGAAATTACAAAAGGGGACAAACTTTTCATTAAGATTGTGAAAAGGAAAATACAAAGAGAAAAAAACAAAAGAATGAAAAATACATCGCAAACTAATGCAAAAACTGTGGGATTGAAAGAACTTAGCATAGGGCTGTCCAAATGGAAAAAAGGTCCTCAATAGAGTGGCCTTCAAAAGATTTAGCCATAGAACACAAAGAAGAAGCCTTGGGCTTTGCCACATCAAGTCTTGAGAGCCAAGGCAAATGCTTGTCTTTAAAAGTTCTTTGGTTTCTGATACGAACCCGAGGTCGTTGAAAGTTTACTCAAAACGACCTCGGGTTCGTATCAACGACCTGGGGGTGCGGCCGAGCGGGCTGGGGAGGACCGGGCGCGAGCAAACGGGAGTGGGGCGCGAGGGCCGGCGCGGTTCTGGGCGCGGGTTCGGTCGTGGTGGCGGGGTGGTCGGGGCTCAGGGGCGAGTGGGGCGCGAGCCCTAGCGGGTGAGCGGGGTTGGTTGGGGGATGCGGCCGGGGTGCGGGAGAGTGGGGCGCGGGCCCGGGCGGTGGTGAGCGGGGCAGGGGCGCGGGTCAGGGCAGGGGCGACCGTGGTGCTGGGCGGGCGGTCGGGTCGGGCCGGGGTGGTATCAGCCGGTTCGGGTCAACCGGGGTGGACCGGAGAGAAAATTTTCGTGGCTTGACCGATGGGGACAATTATATGAGTTCGGAATTCGAGCGAAGGGGAGATGGCCGGTTCGATGGCAGGGGGAATGTTTTTCCGGAGGAGAGGAAGGTGCGCATAGGCTATGAAAGGCCGATTGCGCATGACGGTTGAAACGAGCGGGAGGATTGGAGGGACGAGCAAGAACGGGGTGACCGAGGGGACCAGGGGCGGCGGATGGGATGGACCAACTGCTGATAGACGGTTCTGAAAATTGGAAATGCCGGTGTTTAAGGGTCTTATCGATGAGGACCCGGACGGTGGCTCTGCCGAGTGGAAAGGTATTTACGGGTAAATCGGTTGACGGCCATGAAAGGGTCGATCACGGCGACCACTGTATATGGAAGGGGAGGCATTGGAATGGCTACGATGATGAAGAGGATCGAGCTCAGATTGCTTCGTGGGAGGAGTTTCGAGAATTGCTATTGCATCGTTTCCAACCAACGATCAATGACAATAAATATGCCAACTTGATGAGTCTCGCAACAAGTGGGAGCAGTCAAGGAATATCGCCGGTTGTTTGAGAAATATGCAAAGGGTACGCGCGATATCGGTCTGAGTGCCTTGGAAGGGAAATGGGAGAGTGGTCTAAAGGTTTGAAATACGAAGCGAAATGAGAAAAAAGCGAGACCACTCGGAATCCGGGATAAGAAATTCATGGCACAGTAATCGAAGATGACTTGGCTTTTCAAATCAAGCCAAAGGAGTTAGCACGACGTCAACGGTTAGACCAAGCTCGAGTTCGTACTACTATGAGTACAAGAGTAGCGAGAGTACGAACCTAAAAACCATCACACACCGCCTCGGTCTATTCCGGTAGATCAACACCGTCGAACAACCCCACCCCGCCATCCCGTATAAACGCTTAACGAGATAGTGAGATCCGCATTCGTAAAGACAAGGGGCTATGTTTTAGGTGTGACGAGAAGTTCGTGCGGGCACCGGTGTAAAAAAAGGAACTACAAGCTCTGAGATTCTTGTCGATGCGTGATGCAGATGAAAAACGGGAAAATGAGGAAAATGATGATTCCCAAGAATGTGCGTTCAAGATGCTTTTGTTGAGGAAATGGTGGATACACCAAATATGGCAACCCTTTCATTGCACTCCATGGTTGGACTAAGCTCCCCAAAACTCACGAAAGGTGACAGAGGCTCGATCACGGGGACATGAAGTAGTAGTATTAATCGATAGTGGGGCTACGCATAACTTCATATCCGAGGACATGGTTGCTAAGTTGAAATTACCGGTAGAACCATTTGATGATTATGGCATTATGTTGGGGACTGGGGATTCTGTGAGAATCACGGCATTTGTACGAATGTGGAACTTCATTGACCAAGATGAGAATAGTAAATGATTTCTTGCCCTTACCGCTGGGTAGTGCGGATGTGATTTTGGGCGTTGTGTGGCTAGCCACATTGGGAAAAATTGAATTTGACTATCGCGCGCTTAAAATGAAATTCAAGCTGGGGTCAGGGCAGGTCGAATTGCAGGGCGAGCCACGGCTGGTCAAGGCCCAGGTTTCATTGAAATCTATGATGAAATCCTTACGTCCCGCGGAGCAGGGGCTTCTGGTCGAGCTGAATATGATTGAAACCCCGATACCGTCTCGTGAAAATATCCCCGGACCCTACGACTTGTCTCGTGTACCCGAAGAACTCCACGCCGTACTTTGTTTATACTCACCGGTTTTGAATCATTGATGAGTCTTCCTCCACAGCGTAATTGCGACCATGCTATTGCGCTATTGCCGTGCAAGGACTCGTGAATGATATGCGTCCGTGACGGTACCCTGATGCGGATCGTAAGAACGAGATTGAAAAATTAGTGGGAGAAATGTTATTGGCTGGTATTATCCGTCCCAGCACGAGCCCTTTTTCAAGTCCAGTTCTATTGGTTAAAAAGAAGGATGGGAGTTGGCGTTTCTGTGTCGACTATCGCGCCCTGAATCAAGCGACAGTGCCCGATAAGTATCCGATACCGCTGGTTGATGAATTATTAGATGAGTTGCATGGGGCAACGGTATTTTCAAAAATTGATCTTAAGGCGGGTTACCATCAAATACGTGTTAAGCGGTGATGTACACAAAACAAAGATTTAGAACTCACGAGGGCCACTACGAGTTTGTAGTCATGCCTTTTCGGATTACGCAACGCTACCGCGACATTTCAATCGATTATGAATGAGATTTTGCGTCCGTTCCTACGCCGGTTTGTGCTAGTAATTTTTGATGACATCCTGATATACAGTGTGACCATCGATGAACATAAGGAGCATTTAGTCAGCGTGTTTGAAGTGTTACAGACACATGCCTTGGTGGCAAATGCCAAGAAATGTCGATTTGAATCACGCAAGATTGAGTATTTGGGGCATTTTATATCTGGCTGAGGAGTGGCTGCGATCCGGAGAAAATTGTGGCCATGGTACGTTGGCCAAGCCATAAAAACATTAAAGACTTACGGGGATCCTTTGGGCTCACAGTTACTACCGTCGTTTTGTGGCGAATTATGGGTCGATGGCCTTTCCATTGACTCAGCTGTTAAAAAAAGGAAGGTTTGAATGGGGCCCAACAGTGGAAGAATGTTTTCAGAGACTTAAGCATGCAATGAGTAGTGTGCCAGTATTGCGATTGCGGACTTTGATCGATTGTTTGTTGTGAGAGCGGATGCTTCCAGATTGGCGTGGAGTGCGATCTTGATGCAATAGGGCGCACCGTTAGCCTATTTCGATAAGGCCCTTCCTCTTACCCATCGCGTGAAGTCAGTTTATGAGCGCGAGCTAATGGCTATCGTGTTTGCAGTCCAGCGTTGGCGAGCTTACCTATTGGGACACCACTTTATTGTACGTACGGACCAAAAGAGCCTCAAATTCCTGCTAGAACAACGTGTAGTTGATGGAGAGTACCAGCGATGGATAGCGAAACTACTGAGTTATGATTTCCATATTGAATACAAGAAAGGCTTAGAAAACAGAGCGGCAGATGCCCTTTCTCGTATGCCATCGACCGGGGAGTTGAGCATGTTGAGTTGTGTGGCCGGAGTTAACACGGCAGTGTTCACTCAACAAGTGAGGGAAAATGAAAAGTTGTTTGCTATTTATACCGCTGTAGTTGCAGGAGAGGAGGGTCCGCCAGGTTATTCCGTCATGGGTGATGTGCTATTATACCAGGGACGGTTGGTGCTACCTCCGACTTCGCCTACGATTCCTCTGTTACTTAATGAGTTCCACGGGGGAGCCATCGGGGGGCATTTTGGGGTCCTAAAGACGTACCAACGCCTAGCTAAAGAGGTGTATTGGCCTGGAATGAAGGCTCGCGTCCGCGCATTTGTGGCCGAATGTTCGATTTGTGTTCAAGCGAAGCATCTATCGTTGTCACCAGCTGGTCTTTTGCAACCGTTACCGATTCCGGACAGGATTTGGGAGGACATCTCGATGGATTTTGTTGAAGGACTTCCCCGTTCTGAAGGTTATGACACTATTTTTGTGGTGGTGGATCGGCTGTCTAAGTACGCGCACTTTATACCCCTTAGGCACCCATTTACTTCTCTTTCAGTATCACAGGTCTTTATCAGAGAAGTGGTCCGTTTGCACGGAGTGCCTAAGAGTATCGTGTCGGACCGTGACAAGATATTCACTAGCCTCCTCTGGGAGGAGATATTCAAGGCATCTGGGACTCAGCTACGTCGTAGTACTACATACCACCCACAAACTGATGGCCAAACTGAGGTCGTAAATCGCTGTTTAGAATCGTACCTACGATGCTTTGTGTTGACACAGCCAAAGTCCTGGTACCGATGGCTGGCTTGGGCTGAGTTCAGTTTCAATACGTCATTTCACTCGTCCATGGGGATGACTCCTTTTGAAATTGTTTACGGGCGTTCTCCGCCGACCATTTTGGGTTATGATTATGGGGCTAGTCCGGTGGCAACAGTGGATTCCTTAATGATGGAACGTGATCGAATGTTGGAGAAGCTTAAGGCAAATTTGTTGCGTTCACAGCAATTAATGACGGAGCGTGCTAACGCAAAGCGCCGGGATGTTCAGTATGATGTGGACGATTTGGTGTATGTTAAGCTCCGACCCTACCGCCAGTCGTCCTTGGCGAAGTTTACACACCCCAAGTTAGCACCACGGTTCATCGGGCCATATCGTGTGTTAGCTCGGGTGGGGCGATGGCGTCGCAGGTTGGACTTACCACGCAGACGGTAAGGATTCACCCGGTTTTTCATGTTTCCGTGCTACGCAAGGCGGTTGGTTCCTCTGGGCTTGTTTTCCCTACACCGGCTTTGGTGGGAGATGATCTAGGCGTGCTTGTTTGTCCCAAGGCTGTTTTGGGTCTACGAGAGTCCTCGCAGGAGGGAGGTTCGCGCCAAGTTTTGATCCAATGGGAAGGATCCACTCCGGACGACGCTACTTGGGAGTCTGCTGCAGATCTAGAGCTCCAATTTCCGGATTTTCACCTTGAGGACAAGGTGGTTCTTTGGGGGGGAAGTATTGATACGAACCCGAGGTCGTTGAAAGTTTACTCAAGGCGAACCAAGAAGTGACGGATCCCTTTTTATTGCTTTATTAAATATAATTATGTTTTGTTATTTAAGTTGTATTGGGCTTTTGGGCCTTAATAGGGATTATTTACTAAATTAGGTTAAATCCTAGGTTTACTATAAATAGGTTATGTTAGGCCTCTAGCAATTCATTCAAACAGTTGTCGTCTTTGTATTTGGCTCTTTGAGAGATCCTCTCGAGAGATTATCATAGTTTCTTAATAATAATAGTAGTAGATTCTATCAGTTTCTTTCCCACTATTATTGGTATAACAGGGCTTTTGGTGCATTGAACCATAGCAGCCTATCGTTTTTACTCATCTGAGAACTTTCCAAAGACTTGAAACATTTTTCCGAACATCATTATGGAATACAATTAAGATCAAATGAACTCATGAGCAGGAGCCACCATGATTGGGAAAATCTGCACATAAACAGAATGTGATTGGCAGTTTCTGAGCTACATTGCACAAAGGGCAAACTTTTGAATTTTTTTTGCAGAGAGTCTGTATTAATGTTACCATGAAGAAGAATCCAGATGAAAAAAAAAATAACTCTCTTAGGGCTCTTTGATTTCCAAATAGCCTTGAATACATGCTCTTTGATTATTGCCCTGTTACTCTATGGTTATCTACCCCTTTGACCGCATACGTGCCTACACCAAACTTTTTGTATGCATTAAGATCTCAAATATGAAACTTAGTTCAAACCAATTTGAGTATAACACACAATCAAATGGTTAAAAGTTTGAATTCCCCAACTTCCACTTTTTTTTTTAACTCGAAACATGAATCCTAGTTCAATCTAGTTGCATGTGCAAATGTTTTCTGTTGGATTATTTTGTCTTCAACTCGAGATTGAATTGATTTTACTTCATTGTTTAGGTATTCAGGTTGCTGATATGTTATAGTTTTTTGTTGCTGATATGTTATCTCTTGCTCACACGCTTGTTGAATTTTCAGATATTCAGGTTGATTCTGAAACAAGAATGGTACAAGCCTGATGTCTTTATGTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGGAGTTATGGGAAACCATGAGAAAGGAGAACTTATTCCCCGACTCACAAACGTATACCGAAGTCATCAGAGGTTTCTTGAGATACGGATCTCCTTCTGATGCAATGAACATCTATGAGGATATGAAGAAATCTCCAGATCCCCCAGATGAGTTGCCATTTAGGATTTTGTTGAAAGGACTTCTCCCACACCCCCTTTTGAGAAACAGAGTTAAGCAAGATTTTGAGGAGATCTTTCCTGATCAGCATGTTTACGATCCCCCCGAAGAGATATTCGGCCTACGTTGAGGTCGGTTTTATGCATCTATTTTTCTCCTCTTTCTTCTCAATTAACATTGGTTATGGTTGTTAGTATGTAGTAGACAATCAAAGTAGGCCTAAGCCATTGTATGGTTATAAACTCAAGCCTCTTCAGCTACTTGTGTCATTATATGTCAAATGTTAAAACACCAAATGACCAAAACATGCTTTTAAAAGACATAGAACCTTCATGGTTGGTTGAGTTCAAGCATAGTAATCACCTACTTAAGATTTAATATCTTATGAGTTACATTATCGATCAAATGTAGTAAAGTGACCATTGTTTCATAAGAATAGTTAAGTTGCATAGCC

mRNA sequence

AAATGATTTAAATCTTCATTTCTAATTTCTCACTTAGTTTAGTAGAGTCCTAAACCCTCAACCAAAAACCCTCTCTGCCCTTTCTCTTCCATCAGTGAACTCGAACCGCAGTACTCCAATGGCAATTCGGGTATTTTCGAGGTCGAAATTCCTCAATCTTTCTTCCCAACTCCTCCGAGCCCTAACGAGTAAACCCATTAGCGATATCCCATCACCAGTGAAATCGCCGATCGCCGGATTTCAGCCGGAGTCGAGCCGACCCACATGCGGATTCCGGCTATTTCACGACGGCCGGCCACGTGGGCCCCTCTGGAGAAGCCGGAAATCAATTGGGAAAGAAGCCCTTTTCGTTATTCAGGGATTGAAGCGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATTAGGAGCCATGTTTCCAGGCTCTTGAAAATGGACATGATTGCTGTTCTTGGTGAGCTTGAGCGCCAGGAAGAGGTTGCTTTGGGCGTCAAGATATTCAGGTTGATTCTGAAACAAGAATGGTACAAGCCTGATGTCTTTATGTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGGAGTTATGGGAAACCATGAGAAAGGAGAACTTATTCCCCGACTCACAAACGTATACCGAAGTCATCAGAGGTTTCTTGAGATACGGATCTCCTTCTGATGCAATGAACATCTATGAGGATATGAAGAAATCTCCAGATCCCCCAGATGAGTTGCCATTTAGGATTTTGTTGAAAGGACTTCTCCCACACCCCCTTTTGAGAAACAGAGTTAAGCAAGATTTTGAGGAGATCTTTCCTGATCAGCATGTTTACGATCCCCCCGAAGAGATATTCGGCCTACGTTGAGGTCGGTTTTATGCATCTATTTTTCTCCTCTTTCTTCTCAATTAACATTGGTTATGGTTGTTAGTATGTAGTAGACAATCAAAGTAGGCCTAAGCCATTGTATGGTTATAAACTCAAGCCTCTTCAGCTACTTGTGTCATTATATGTCAAATGTTAAAACACCAAATGACCAAAACATGCTTTTAAAAGACATAGAACCTTCATGGTTGGTTGAGTTCAAGCATAGTAATCACCTACTTAAGATTTAATATCTTATGAGTTACATTATCGATCAAATGTAGTAAAGTGACCATTGTTTCATAAGAATAGTTAAGTTGCATAGCC

Coding sequence (CDS)

ATGGCAATTCGGGTATTTTCGAGGTCGAAATTCCTCAATCTTTCTTCCCAACTCCTCCGAGCCCTAACGAGTAAACCCATTAGCGATATCCCATCACCAGTGAAATCGCCGATCGCCGGATTTCAGCCGGAGTCGAGCCGACCCACATGCGGATTCCGGCTATTTCACGACGGCCGGCCACGTGGGCCCCTCTGGAGAAGCCGGAAATCAATTGGGAAAGAAGCCCTTTTCGTTATTCAGGGATTGAAGCGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATTAGGAGCCATGTTTCCAGGCTCTTGAAAATGGACATGATTGCTGTTCTTGGTGAGCTTGAGCGCCAGGAAGAGGTTGCTTTGGGCGTCAAGATATTCAGGTTGATTCTGAAACAAGAATGGTACAAGCCTGATGTCTTTATGTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGGAGTTATGGGAAACCATGAGAAAGGAGAACTTATTCCCCGACTCACAAACGTATACCGAAGTCATCAGAGGTTTCTTGAGATACGGATCTCCTTCTGATGCAATGAACATCTATGAGGATATGAAGAAATCTCCAGATCCCCCAGATGAGTTGCCATTTAGGATTTTGTTGAAAGGACTTCTCCCACACCCCCTTTTGAGAAACAGAGTTAAGCAAGATTTTGAGGAGATCTTTCCTGATCAGCATGTTTACGATCCCCCCGAAGAGATATTCGGCCTACGTTGA

Protein sequence

MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRPRGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEEVALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYTEVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFPDQHVYDPPEEIFGLR

Homology

[Close]

BLAST of Sed0016023 vs. NCBI nr
Match: XP_022158131.1 (pentatricopeptide repeat-containing protein At3g46870 [Momordica charantia])

HSP 1 Score: 449.5 bits (1155), Expect = 1.9e-122
Identity = 221/255 (86.67%), Postives = 237/255 (92.94%), Query Frame = 0


Query: 1   MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRP 60
           MAIR FSRSK    +S  LR LT +PI DIP PVKS I GFQP+SSRP CGFR +HDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEE 120
           RGPLWRSRK+IGKEALFVIQGLKRFKEDEEKLQKF++SHVSRLLK+DMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYT 180
           VAL VKIFRLI KQ+WYKPDVFMYKDLI+ALA SKKMDDAMELWE+MRKE+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240
           EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRN+VKQDFEE+FP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQ+VYDPPEEIFGLR
Sbjct: 241 DQNVYDPPEEIFGLR 255

[Close]

BLAST of Sed0016023 vs. NCBI nr
Match: XP_023519300.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519301.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 445.3 bits (1144), Expect = 3.6e-121
Identity = 219/255 (85.88%), Postives = 236/255 (92.55%), Query Frame = 0


Query: 1   MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRP 60
           MA+R FS+SK     S  LR LT++PI DI  PVKS +AGFQP+SS+P  GFRL+HDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEE 120
           RGPLWRSRK+IGKEALFVIQGLKRFKEDEEKLQKF++ HV RLLK+DMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYT 180
           VAL VK+FRLI KQEWYKPDVF+YKDLIVALARSK+MDDAMELWE+MRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240
           EVIRGFL+YGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Sed0016023 vs. NCBI nr
Match: XP_022964699.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964700.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964701.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >KAG7019169.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 444.5 bits (1142), Expect = 6.1e-121
Identity = 219/255 (85.88%), Postives = 234/255 (91.76%), Query Frame = 0


Query: 1   MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRP 60
           MA+R FS+ K     S  LR L  +PI DIP PVKS +AGFQP+SSRP  GFRL+HDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEE 120
           RGPLWRSRK+IGKEALFVIQGLKRFKEDEEKLQKF++ HV RLLK+DMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYT 180
           VAL VK+FRLI KQEWYKPDVF+YKDLIVALARSK+MDDAMELWE+MRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240
           EVIRGFL+YGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Sed0016023 vs. NCBI nr
Match: XP_023521051.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522412.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443.7 bits (1140), Expect = 1.0e-120
Identity = 218/255 (85.49%), Postives = 236/255 (92.55%), Query Frame = 0


Query: 1   MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRP 60
           MA+R FS+SK     S  LR LT++PI DI  PVKS +AGFQP+SS+P  GFRL+HDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEE 120
           RGPLWRSRK+IGKEALFVIQGLKRFKEDEEKLQKF++ HV RLLK+DMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYT 180
           VAL VK+FRLI KQEWYKPDVF+YKDLIVALARSK+MD+AMELWE+MRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDEAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240
           EVIRGFL+YGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Sed0016023 vs. NCBI nr
Match: XP_038895593.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895594.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895595.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida])

HSP 1 Score: 443.0 bits (1138), Expect = 1.8e-120
Identity = 218/255 (85.49%), Postives = 235/255 (92.16%), Query Frame = 0


Query: 1   MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRP 60
           MAIR FSRSK    +S  LR LT +PI D   PVKS I GFQP+SSRP  GFRL+HDGRP
Sbjct: 1   MAIRWFSRSKLPIFASVFLRGLTRRPIRDSSLPVKSTITGFQPDSSRPLWGFRLYHDGRP 60

Query: 61  RGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEE 120
           RGPLWRSRK+IGKEALFVIQGLKRFKEDEEKL+KF++SHV RLLK+DMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMISVLGELERQEE 120

Query: 121 VALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYT 180
           VAL VKIFRLI KQ+WYKPDVF+YKDLI+ALARSKKMDDAM+LWE+MR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240
           EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Sed0016023 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 5.1e-94
Identity = 175/254 (68.90%), Postives = 204/254 (80.31%), Query Frame = 0


Query: 2   AIRVFSRSKFLNLSSQLLRALTSKP-ISDIPSPVKSPIAGFQPESSRP-TCGFRLFHDGR 61
           AIRV SR KF   +S   + +T  P I  I      P     P   +P T     FHDGR
Sbjct: 3   AIRVCSR-KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 62

Query: 62  PRGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQE 121
           PRGPLWR +K IGKEALFVI GLKR KED+EKL KFI++HV RLLK+DM+AV+GELERQE
Sbjct: 63  PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 122 EVALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTY 181
           E AL +K+F +I KQEWY+PDVFMYKDLIV+LA+SK+MD+AM LWE M+KENLFPDSQTY
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 182

Query: 182 TEVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIF 241
           TEVIRGFLR G P+DAMN+YEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEE+F
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 242

Query: 242 PDQHVYDPPEEIFG 254
           P++H YDPPEEIFG
Sbjct: 243 PEKHAYDPPEEIFG 255

[Close]

BLAST of Sed0016023 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.4e-46
Identity = 84/181 (46.41%), Postives = 131/181 (72.38%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEEVALGVKIFRL 130
           + KE L   + LKR +    +L +FI SHVSRLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 ILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYTEVIRGFLRYG 190
           + ++ WY+PD+F Y+D+++ LAR+KK+D+  ++WE ++KE +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFPDQHVYDPPEE 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF E+FP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]

BLAST of Sed0016023 vs. ExPASy Swiss-Prot
Match: Q9FMQ1 (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-09
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 120 EVALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTY 179
           +V  G+++F   +K +   P VF+Y  LI  L + K+M+DA +L++ M    L P   TY
Sbjct: 194 DVGKGLELFNR-MKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 180 TEVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGL 222
             +I G+ + G+P  +  + E MK     P  + F  LLKGL
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGL 294

[Close]

BLAST of Sed0016023 vs. ExPASy Swiss-Prot
Match: Q76C99 (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.6e-09
Identity = 27/80 (33.75%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 139 PDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYTEVIRGFLRYGSPSDAMNI 198
           PDV  Y  +I AL +++ MD AME+  TM K  + PD  TY  ++ G+   G P +A+  
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 199 YEDMKKSPDPPDELPFRILL 219
            + M+     PD + + +L+
Sbjct: 289 LKKMRSDGVEPDVVTYSLLM 308

[Close]

BLAST of Sed0016023 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 125 VKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYTEVIR 184
           +++F L+ +Q WYKP+V +Y  LIV L + K+ + A EL++ M  E    + + YT ++ 
Sbjct: 134 IQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVS 193

Query: 185 GFLRYGSPSDAMNIYEDMKKSPD-PPDELPFRILLKGLL 223
            + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 194 AYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

[Close]

BLAST of Sed0016023 vs. ExPASy TrEMBL
Match: A0A6J1E045 (pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=3673 GN=LOC111024687 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 9.2e-123
Identity = 221/255 (86.67%), Postives = 237/255 (92.94%), Query Frame = 0


Query: 1   MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRP 60
           MAIR FSRSK    +S  LR LT +PI DIP PVKS I GFQP+SSRP CGFR +HDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEE 120
           RGPLWRSRK+IGKEALFVIQGLKRFKEDEEKLQKF++SHVSRLLK+DMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYT 180
           VAL VKIFRLI KQ+WYKPDVFMYKDLI+ALA SKKMDDAMELWE+MRKE+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240
           EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRN+VKQDFEE+FP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQ+VYDPPEEIFGLR
Sbjct: 241 DQNVYDPPEEIFGLR 255

[Close]

BLAST of Sed0016023 vs. ExPASy TrEMBL
Match: A0A6J1HLK1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464704 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.0e-121
Identity = 219/255 (85.88%), Postives = 234/255 (91.76%), Query Frame = 0


Query: 1   MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRP 60
           MA+R FS+ K     S  LR L  +PI DIP PVKS +AGFQP+SSRP  GFRL+HDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEE 120
           RGPLWRSRK+IGKEALFVIQGLKRFKEDEEKLQKF++ HV RLLK+DMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYT 180
           VAL VK+FRLI KQEWYKPDVF+YKDLIVALARSK+MDDAMELWE+MRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240
           EVIRGFL+YGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Sed0016023 vs. ExPASy TrEMBL
Match: A0A6J1I496 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469502 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.9e-120
Identity = 219/255 (85.88%), Postives = 234/255 (91.76%), Query Frame = 0


Query: 1   MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRP 60
           MA+R FS+SK     S  LR LT +PI DIP PVKS IAGF P+SSR   GFRL+HDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEE 120
           RGPLWRSRK+IGKEALFVIQGLKRFKEDEEKLQKF++ HV RLLK+DMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYT 180
           VAL VK+FRLI KQEW+KPDVF+YKDLIVALARSKKMDDAMELWE+MRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240
           EVIRGFL+YGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Sed0016023 vs. ExPASy TrEMBL
Match: A0A0A0LVE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.8e-119
Identity = 212/255 (83.14%), Postives = 234/255 (91.76%), Query Frame = 0


Query: 1   MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRP 60
           MAIR FSRSK    +S  L+ LT +PI D+P PVKS I  FQP+S RP  GFRL+HDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEE 120
           RGPLWRSRK+IGKEALFVIQGLKRFKEDEEK +KF++SHVSRLLK+DM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYT 180
           VAL VKIFRLI KQ+WYKPDV++YKDLI+ALARSKKMDDAM+LWE+MR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240
           EVIRGFLRYGSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Sed0016023 vs. ExPASy TrEMBL
Match: A0A5A7SRJ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00030 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.6e-119
Identity = 213/255 (83.53%), Postives = 234/255 (91.76%), Query Frame = 0


Query: 1   MAIRVFSRSKFLNLSSQLLRALTSKPISDIPSPVKSPIAGFQPESSRPTCGFRLFHDGRP 60
           MAIR FSRSK    +   LR LT +PI D+P PV S I GFQP+SSRP  GFRL+HDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEE 120
           RGPLWRSRK+IGKEALFVIQGLKRFKEDEEKL KF++SHVSRLLK+DM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYT 180
           VAL VKIFRLI KQ+WYKPDV++YKDLI+ALARSKKMDDAM+LWE+MR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240
           EVIRGFLRYGSPSDAMN+YEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Sed0016023 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 345.5 bits (885), Expect = 3.6e-95
Identity = 175/254 (68.90%), Postives = 204/254 (80.31%), Query Frame = 0


Query: 2   AIRVFSRSKFLNLSSQLLRALTSKP-ISDIPSPVKSPIAGFQPESSRP-TCGFRLFHDGR 61
           AIRV SR KF   +S   + +T  P I  I      P     P   +P T     FHDGR
Sbjct: 3   AIRVCSR-KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 62

Query: 62  PRGPLWRSRKSIGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQE 121
           PRGPLWR +K IGKEALFVI GLKR KED+EKL KFI++HV RLLK+DM+AV+GELERQE
Sbjct: 63  PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 122 EVALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTY 181
           E AL +K+F +I KQEWY+PDVFMYKDLIV+LA+SK+MD+AM LWE M+KENLFPDSQTY
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 182

Query: 182 TEVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIF 241
           TEVIRGFLR G P+DAMN+YEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEE+F
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 242

Query: 242 PDQHVYDPPEEIFG 254
           P++H YDPPEEIFG
Sbjct: 243 PEKHAYDPPEEIFG 255

[Close]

BLAST of Sed0016023 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 188.0 bits (476), Expect = 9.7e-48
Identity = 84/181 (46.41%), Postives = 131/181 (72.38%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKLQKFIRSHVSRLLKMDMIAVLGELERQEEVALGVKIFRL 130
           + KE L   + LKR +    +L +FI SHVSRLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 ILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYTEVIRGFLRYG 190
           + ++ WY+PD+F Y+D+++ LAR+KK+D+  ++WE ++KE +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFPDQHVYDPPEE 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF E+FP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]

BLAST of Sed0016023 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 83.2 bits (204), Expect = 3.3e-16
Identity = 59/177 (33.33%), Postives = 85/177 (48.02%), Query Frame = 0


Query: 61  RGPLWRSRKSIGKEALFVIQGLKR---------------FKEDEEKLQKFIRSHVSRLLK 120
           R PL R R  +  EA+  +Q LKR                      L + I S   RLLK
Sbjct: 496 RKPLQRGR-MLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 555

Query: 121 MDMIAVLGELERQEEVALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWE 180
            DM+AVL EL RQ E +L +K+F  I K+ WYKP V MY D+I  +A +  M++   L+ 
Sbjct: 556 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 615

Query: 181 TMRKE-NLFPDSQTYTEVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGL 222
            M+ E  L  + + +  ++   L +      M+ Y  M+     PD   FR+L+ GL
Sbjct: 616 AMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGL 671

[Close]

BLAST of Sed0016023 vs. TAIR 10
Match: AT5G12100.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-10
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 120 EVALGVKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTY 179
           +V  G+++F   +K +   P VF+Y  LI  L + K+M+DA +L++ M    L P   TY
Sbjct: 194 DVGKGLELFNR-MKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 180 TEVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGL 222
             +I G+ + G+P  +  + E MK     P  + F  LLKGL
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGL 294

[Close]

BLAST of Sed0016023 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-09
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 125 VKIFRLILKQEWYKPDVFMYKDLIVALARSKKMDDAMELWETMRKENLFPDSQTYTEVIR 184
           +++F L+ +Q WYKP+V +Y  LIV L + K+ + A EL++ M  E    + + YT ++ 
Sbjct: 134 IQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVS 193

Query: 185 GFLRYGSPSDAMNIYEDMKKSPD-PPDELPFRILLKGLL 223
            + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 194 AYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

The following BLAST results are available for this feature:

BLAST of Sed0016023 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158131.1	1.9e-122	86.67	pentatricopeptide repeat-containing protein At3g46870 [Momordica charantia]	[more]
XP_023519300.1	3.6e-121	85.88	protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subs...	[more]
XP_022964699.1	6.1e-121	85.88	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964...	[more]
XP_023521051.1	1.0e-120	85.49	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >X...	[more]
XP_038895593.1	1.8e-120	85.49	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_0388955...	[more]

BLAST of Sed0016023 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	5.1e-94	68.90	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	1.4e-46	46.41	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
Q9FMQ1	3.9e-09	34.31	Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop...	[more]
Q76C99	8.6e-09	33.75	Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV...	[more]
Q9FKC3	1.9e-08	34.34	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]

BLAST of Sed0016023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E045	9.2e-123	86.67	pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=...	[more]
A0A6J1HLK1	3.0e-121	85.88	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1I496	1.9e-120	85.88	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A0A0LVE9	2.8e-119	83.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1	[more]
A0A5A7SRJ7	3.6e-119	83.53	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Sed0016023 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46870.1	3.6e-95	68.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	9.7e-48	46.41	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09320.1	3.3e-16	33.33	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT5G12100.1	2.7e-10	34.31	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G48730.1	1.4e-09	34.34	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 139..187 e-value: 2.8E-10 score: 40.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 178..205 e-value: 1.7E-4 score: 19.6 coord: 143..175 e-value: 2.3E-5 score: 22.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 175..209 score: 10.544828
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 140..174 score: 11.191545
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 69..255 e-value: 2.5E-55 score: 188.7
None	No IPR available	PANTHER	PTHR46870:SF2	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 1..254
IPR044795	Pentatricopeptide repeat-containing protein THA8L-like	PANTHER	PTHR46870	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 1..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016023.1	Sed0016023.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding