Sed0016021 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCATTATTTAAAAATATTCTTAAAAAGGAAAAGAAAATAAAAAAGGGTGGTGTTTTAGCTTTTTGGCGCCATAAAAATTAGGTGCGCCTGTATTAGTGGACATTCAAGTGGGAATTGCACATGCAGCGTGCACCATGTTTTCCATTATCATTATGTTTTCTTCTACCCCACCACTGTTCTTCTTCTTCTCCATTCTAATTCCCACAATCCCCGCATAATTCATCGCAATCAAAATCAAACTCCATTTTTATAAATTCAAACCAAAATCAAAATCAAACCAAACATTTGCATACCTTTTCTCCACTTCAATGGCTATGGCTATGGCTATGGCTTCCACCTCCAAGCACTTCTTCTTCTTCCTCCTCCTCCTCGTCCTCTCCTCTGCACAAACCGAAGCCAGAGTCAGCAAATTCTTCAGCAAATTCATCCATACTCAAAACAACGAAGTTCCTCAACTCACTCCGACCTCTGATCTTCCGCTACCTCCGTCTCCGGCGCCGGAGATCTCTCCGATCTTCCCGCCGATTGAGGCTCCCGCGCCGTTTTTCGACGAATCGCAGAACGCGTACGGTCTGTACGGCCGAGACGCCGGCGACGGCGAGAGAAGCCGGACGATCACCGACGTGGAGGAGGAGATCCTCGCGGACAACGGCGACGGCGAGGAAAACACCAGATCTGGCTATCCGGATACGAAATTACAGAGTGACGATTTCGGAAGCCCTAGGCGATACGAGCAGAATCAAAACAACTACAAAAACAACAACGGATACAGAAATTCGGAATTCGAGAACAATGAACACAGAAATTCAGAGTACGAGAGCAATTTCGAGAACAACGGCGAGAGAAATTACCAGTACCAGAGCAATTTTGAGAACAACGGCGAGAGAAATTACCAGTACCAGAGCAATTTCGAGAACAACGGCGACGGCTACAGACAGAGGCGATACGAACCGTCGGAGCGGCAGGGGATGAGCGACACCAGATTCGTCGAGAACGGGCGATACTTTCACGATGTTAACTCGAGAAATGGAGAAAATGATCAAGGCGAATCGTTCGGGAATTACAAGAAGAATCAATACGAGTTTGATTCGATGGAGGAGTACGAGAAGAGTGAGGGATTTCTTCCTTGATGCAGAGAGGGGAACTTTTCTAGGGTTTATAGCTTCATCTTGAACCCCTAAATTATGGAGGTTTTTGTGTTTCTGTCCGTTTGTGTTTGTGATTTTGGTGTTTTTTTTTTGTAATCTTTGAGTTGTGATTGTTTTTGCACAACTTGGATTTAGTGTTCTGGGGTTTGAATTTTATACAATGGGAAATTATGTATGCGTTTTGGATTTAAAAAGTGATACAAACAAAAATGATGCTTTCATTTTGGAATTAAATTCCACAATGAGATCATTTTTTAATACAAGAAGGGAAAGGAGGATATAACCTATAATTTCGTGTTATTAGATTATAATTTATGTCGGTAGAAGTTTACTGCTCTTCTCAGTGTGTAGACCAATTTAAGAGTATTAGATTGATGCATTACTCTTGTTTGGTTCAACTACATTATTTAAGTTTAAATATTTATGTAACATTTTATGCGG CTCATTATTTAAAAATATTCTTAAAAAGGAAAAGAAAATAAAAAAGGGTGGTGTTTTAGCTTTTTGGCGCCATAAAAATTAGGTGCGCCTGTATTAGTGGACATTCAAGTGGGAATTGCACATGCAGCGTGCACCATGTTTTCCATTATCATTATGTTTTCTTCTACCCCACCACTGTTCTTCTTCTTCTCCATTCTAATTCCCACAATCCCCGCATAATTCATCGCAATCAAAATCAAACTCCATTTTTATAAATTCAAACCAAAATCAAAATCAAACCAAACATTTGCATACCTTTTCTCCACTTCAATGGCTATGGCTATGGCTATGGCTTCCACCTCCAAGCACTTCTTCTTCTTCCTCCTCCTCCTCGTCCTCTCCTCTGCACAAACCGAAGCCAGAGTCAGCAAATTCTTCAGCAAATTCATCCATACTCAAAACAACGAAGTTCCTCAACTCACTCCGACCTCTGATCTTCCGCTACCTCCGTCTCCGGCGCCGGAGATCTCTCCGATCTTCCCGCCGATTGAGGCTCCCGCGCCGTTTTTCGACGAATCGCAGAACGCGTACGGTCTGTACGGCCGAGACGCCGGCGACGGCGAGAGAAGCCGGACGATCACCGACGTGGAGGAGGAGATCCTCGCGGACAACGGCGACGGCGAGGAAAACACCAGATCTGGCTATCCGGATACGAAATTACAGAGTGACGATTTCGGAAGCCCTAGGCGATACGAGCAGAATCAAAACAACTACAAAAACAACAACGGATACAGAAATTCGGAATTCGAGAACAATGAACACAGAAATTCAGAGTACGAGAGCAATTTCGAGAACAACGGCGAGAGAAATTACCAGTACCAGAGCAATTTTGAGAACAACGGCGAGAGAAATTACCAGTACCAGAGCAATTTCGAGAACAACGGCGACGGCTACAGACAGAGGCGATACGAACCGTCGGAGCGGCAGGGGATGAGCGACACCAGATTCGTCGAGAACGGGCGATACTTTCACGATGTTAACTCGAGAAATGGAGAAAATGATCAAGGCGAATCGTTCGGGAATTACAAGAAGAATCAATACGAGTTTGATTCGATGGAGGAGTACGAGAAGAGTGAGGGATTTCTTCCTTGATGCAGAGAGGGGAACTTTTCTAGGGTTTATAGCTTCATCTTGAACCCCTAAATTATGGAGGTTTTTGTGTTTCTGTCCGTTTGTGTTTGTGATTTTGGTGTTTTTTTTTTGTAATCTTTGAGTTGTGATTGTTTTTGCACAACTTGGATTTAGTGTTCTGGGGTTTGAATTTTATACAATGGGAAATTATGTATGCGTTTTGGATTTAAAAAGTGATACAAACAAAAATGATGCTTTCATTTTGGAATTAAATTCCACAATGAGATCATTTTTTAATACAAGAAGGGAAAGGAGGATATAACCTATAATTTCGTGTTATTAGATTATAATTTATGTCGGTAGAAGTTTACTGCTCTTCTCAGTGTGTAGACCAATTTAAGAGTATTAGATTGATGCATTACTCTTGTTTGGTTCAACTACATTATTTAAGTTTAAATATTTATGTAACATTTTATGCGG ATGGCTATGGCTATGGCTATGGCTTCCACCTCCAAGCACTTCTTCTTCTTCCTCCTCCTCCTCGTCCTCTCCTCTGCACAAACCGAAGCCAGAGTCAGCAAATTCTTCAGCAAATTCATCCATACTCAAAACAACGAAGTTCCTCAACTCACTCCGACCTCTGATCTTCCGCTACCTCCGTCTCCGGCGCCGGAGATCTCTCCGATCTTCCCGCCGATTGAGGCTCCCGCGCCGTTTTTCGACGAATCGCAGAACGCGTACGGTCTGTACGGCCGAGACGCCGGCGACGGCGAGAGAAGCCGGACGATCACCGACGTGGAGGAGGAGATCCTCGCGGACAACGGCGACGGCGAGGAAAACACCAGATCTGGCTATCCGGATACGAAATTACAGAGTGACGATTTCGGAAGCCCTAGGCGATACGAGCAGAATCAAAACAACTACAAAAACAACAACGGATACAGAAATTCGGAATTCGAGAACAATGAACACAGAAATTCAGAGTACGAGAGCAATTTCGAGAACAACGGCGAGAGAAATTACCAGTACCAGAGCAATTTTGAGAACAACGGCGAGAGAAATTACCAGTACCAGAGCAATTTCGAGAACAACGGCGACGGCTACAGACAGAGGCGATACGAACCGTCGGAGCGGCAGGGGATGAGCGACACCAGATTCGTCGAGAACGGGCGATACTTTCACGATGTTAACTCGAGAAATGGAGAAAATGATCAAGGCGAATCGTTCGGGAATTACAAGAAGAATCAATACGAGTTTGATTCGATGGAGGAGTACGAGAAGAGTGAGGGATTTCTTCCTTGA MAMAMAMASTSKHFFFFLLLLVLSSAQTEARVSKFFSKFIHTQNNEVPQLTPTSDLPLPPSPAPEISPIFPPIEAPAPFFDESQNAYGLYGRDAGDGERSRTITDVEEEILADNGDGEENTRSGYPDTKLQSDDFGSPRRYEQNQNNYKNNNGYRNSEFENNEHRNSEYESNFENNGERNYQYQSNFENNGERNYQYQSNFENNGDGYRQRRYEPSERQGMSDTRFVENGRYFHDVNSRNGENDQGESFGNYKKNQYEFDSMEEYEKSEGFLP Homology
BLAST of Sed0016021 vs. NCBI nr
Match: XP_022969172.1 (probable ATP-dependent RNA helicase ddx42 isoform X2 [Cucurbita maxima]) HSP 1 Score: 260.0 bits (663), Expect = 2.3e-65 Identity = 174/289 (60.21%), Postives = 208/289 (71.97%), Query Frame = 0
BLAST of Sed0016021 vs. NCBI nr
Match: XP_038886989.1 (protein E6-like [Benincasa hispida]) HSP 1 Score: 256.9 bits (655), Expect = 1.9e-64 Identity = 162/274 (59.12%), Postives = 194/274 (70.80%), Query Frame = 0
BLAST of Sed0016021 vs. NCBI nr
Match: KAG7011891.1 (hypothetical protein SDJN02_26798, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 248.4 bits (633), Expect = 6.9e-62 Identity = 179/344 (52.03%), Postives = 212/344 (61.63%), Query Frame = 0
BLAST of Sed0016021 vs. NCBI nr
Match: XP_023554545.1 (GATA zinc finger domain-containing protein 14-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 248.1 bits (632), Expect = 9.0e-62 Identity = 180/344 (52.33%), Postives = 211/344 (61.34%), Query Frame = 0
BLAST of Sed0016021 vs. NCBI nr
Match: KAG6572262.1 (hypothetical protein SDJN03_28990, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 246.9 bits (629), Expect = 2.0e-61 Identity = 178/344 (51.74%), Postives = 210/344 (61.05%), Query Frame = 0
BLAST of Sed0016021 vs. ExPASy TrEMBL
Match: A0A6J1HVL6 (probable ATP-dependent RNA helicase ddx42 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468248 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65 Identity = 174/289 (60.21%), Postives = 208/289 (71.97%), Query Frame = 0
BLAST of Sed0016021 vs. ExPASy TrEMBL
Match: A0A6J1HX03 (protein E6-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468248 PE=4 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 4.8e-61 Identity = 177/343 (51.60%), Postives = 210/343 (61.22%), Query Frame = 0
BLAST of Sed0016021 vs. ExPASy TrEMBL
Match: A0A6J1GLC8 (GATA zinc finger domain-containing protein 14-like OS=Cucurbita moschata OX=3662 GN=LOC111455418 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 3.2e-57 Identity = 179/388 (46.13%), Postives = 213/388 (54.90%), Query Frame = 0
BLAST of Sed0016021 vs. ExPASy TrEMBL
Match: A0A6J1C3G6 (protein E6-like OS=Momordica charantia OX=3673 GN=LOC111007909 PE=4 SV=1) HSP 1 Score: 231.1 bits (588), Expect = 5.5e-57 Identity = 155/270 (57.41%), Postives = 180/270 (66.67%), Query Frame = 0
BLAST of Sed0016021 vs. ExPASy TrEMBL
Match: A0A5D3DDN1 (Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00230 PE=4 SV=1) HSP 1 Score: 225.3 bits (573), Expect = 3.0e-55 Identity = 162/280 (57.86%), Postives = 191/280 (68.21%), Query Frame = 0
BLAST of Sed0016021 vs. TAIR 10
Match: AT1G28400.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink). ) HSP 1 Score: 56.2 bits (134), Expect = 4.7e-08 Identity = 91/280 (32.50%), Postives = 116/280 (41.43%), Query Frame = 0
BLAST of Sed0016021 vs. TAIR 10
Match: AT1G03820.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1345 Blast hits to 1122 proteins in 102 species: Archae - 2; Bacteria - 28; Metazoa - 28; Fungi - 30; Plants - 109; Viruses - 0; Other Eukaryotes - 1148 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 2.3e-07 Identity = 77/261 (29.50%), Postives = 107/261 (41.00%), Query Frame = 0
BLAST of Sed0016021 vs. TAIR 10
Match: AT2G33850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in 133 species: Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink). ) HSP 1 Score: 53.1 bits (126), Expect = 4.0e-07 Identity = 85/264 (32.20%), Postives = 121/264 (45.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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