Sed0015989 (gene) Chayote v1

Overview
NameSed0015989
Typegene
OrganismSechium edule (Chayote v1)
DescriptionVesicle transport protein
LocationLG13: 473408 .. 477686 (+)
RNA-Seq ExpressionSed0015989
SyntenySed0015989
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATTTTGCACGCAGTGGGTTTAGTTTATCGATGATCAATTACAGCTTCGAAACTTCGATCCACACCTTCGAAACTTGGAGCGCTTAGCCAATTCTGAAATTCCATCAAAATGTGGAAGCTCGGACGAGGCGGATTTGGCGATGAAGAAGAGCGTGGCCAGAGCTTGTTGGATGAAGATTCTGAAGATCTATGCTCTCTAACTTCCGTTCAGGTACTTTAAACAACGATTACAGAGCTCGATTTGTGGTTAATTTTATGGGTTTTGATTTTGGTGCTTATTGGATTGTTGCCCAATAGAGATTGTACGGGTTTGGAGGCTGCTTGACTGGGGGCGTGGTTTGCATGATTGTGGTATGAACATTTTTAGTCACTTTTATGTTTGATACAACTGCGTATGTGTATGTTTATACCGTAAGCATCTTGTGTTAATGGGGAACTTTGATAACTATTGTGGAATGGAGATAAACCATCACGGAGTGACCTACTAGTCAAGAGTTTAATCGTTGTGGCCACCCATTTAGGAATTAACTTTCTATGGGTTTCCCGTACAACCAAATGTTGTAGGGTCAGGATGTTCGTGACAATAGTCGAGGTGCGTGCAGGCTGGCCGAACGGTCACAGATATAAAAAAAACAATTATGGAATGTAGGTAAGTTTTTTTTAAAAAAAAATATTCGTGAGTGTTCGGGTCAGCTTTGACTATTCACAGGGGACATACCGTCTAACCCTTAATTCATAAGAAATTATTTCTTAGTTGGTGGTTATCATGAATTGAACCGACCACCTCTTAGTTACTTATGACACTCTTGATCATTGGGTCGCTCCAATGATGGTTGGATGTAAATAAGGTTCATGGTCTTTGGTTGGTCCTGATTGTGGAATGAGATTAAATCCGGTCTTTATGGGAGAGAACAGAGGATGTTTACAATTAAGGAGGGTTAGGTGCTAGTGCTATGAAAGACCATGGTCAATGTTACAAAACTGAAATGATTTATCAAAGCATTCCCTGGCATTGAGGTGGAAAATTGCAGGAGAGACTGATGGTTAGGGGATTCATCTATATGGGAAGGATTTTAAGGTTTCTGTAGCTTCTGCAGATAGGAAATGACCATAGGTGTGAAGCTTGGGAGGATGTTCTTGGAATATGGCAGCCAGTTGTCTGCAGCAAGTGGACATTATATCATGAAGGTGTATGTTCAGCAGGGGGGGGGGGGGGGGGAGGGGTTCAAAGGGGACATGATGGTTTGTTTCAAAAAAATAAAAGGAACAAGATCACCTCTTTTTTCACTGTTTTTACTGTAACCTGTGTTGGGAATTGCAACTCAATGAATTCGGTGCCCTTAGGCTCTTGAAAGTCAGTAAAATAGGATGTTATCCAATAGTTATTGAGTAACGGGCTTGAGAAGAAAGATAAAACCATATAGGTTAGTGCAGTGAGAGTAATTTTATGGGGTTTGCAGTTAGATGGGAATACATCTAAAATGCTCTTCATCGTTCGCTATCTTAATCATAATCGGTAAACAAATGGAACTATTGGATAGTTAAAGTTAATTGTCTATGACTCTATAGCGTAATGTATCGTGAACCAGTATTTTACTATTTTTGCCGCACGGACTAGTTTACACGCACCTCGAGTAATTTCACGGAACAACCGTCTGCTCCTAATGTATTTGGTTTTTAAGGAGCCTATCGGAAATGAATTCATAATGTAGGTAACTACCATGGATTGAACCTATTCCCTCTTAATTCTCCAAGACCATTTTTACCACTAGGCCAACTGATGATGGTTCATTGTTCTTCTCTCTTCATGGGTGTTTTTTTTAACTTTGTTTTTTTTTCCACAGCAAGTTCATGTGGCTTACTCTAGATCAACATAACCATCTTTATTGATTTTACCTCTTTATCTGAAACTGCACTTAATGTGTTTGCTCCATTTTCATCTTTGTGCAGTCGCTGATTGTTTTTGCTAAGCCAATCAAGTTTGCTGTACTATTTTCATTTGGCAATGTTTTGGCAGTCGGAAGGTTGGTTAACCACTTAAATTAGGCAGCTGCTTTTATAACATTCTTTATGTCAGCAGTTAAGAAGTAATAGGAGCAGCACTTTTGTTGTCCAGGGGAGACCTACTTGGTTGAGGCTTGAGGCCTCCAAGGTATTCTCCATTGGAGGTCTTAGGTTTGAAACCCACGAGTTGAACTCAATTGTAAAATCCCTTGTTTTCTCTAAGTTCGGCCTTGGGACGAGCGTGGGCATCCCGGGTATATAGAAGTGAAGCTCCAATTCCCGATCATTAAAAAAAAAAAAAAAGATGCAGCACTTTTGTTCACTTTCATTTTCAATTTACTCGTTCCGGTTTGCATCTAATACTCCTAATCTCCAATTTCGTGATTTTTTTTCAAGAAGTCTATTGGTTTACAAACAGAAGGAAACAAAAAGCCTTTAATTGTTTTCACCTTGTTGTTTCTTTTCCTTTCCTTGAGGTATTAATATTTGAAATGGCCTCTTATTTTGCAGCACAGCTTTCCTCTTTGGACCTGAGCAACAAATAAGAATGATGTTTGATTCTGTTCGTATATATGCAACAGCTATTTACCTGGGATGTGTGGTTCTAGCTCTTATTTGTGCTCTCTTGGTAAGTTACAATTCTACATTCATGACATCATAGGGTAAAGCAAACTTAAATTATGAGCACGCATAGATATTCAATCTATAAACTTTGGAACACAATGCTAATGGTTTTTTTTTTCTTTCTATTAAACTTTATCTTGGTCTTTTCCTCCAAATCTCTCATTGGATGGTTTTAGTATTGTTTTCTTTGTCCCCAAGGGGTGGCACAGTGGTTAAAGACTTGGACTTTGAAGGTATGCTTCCTTCAAAGTCCCAGGTTCGAGACTCACCTCTGACATTACTCCTTCGATGTCTCCCGGTGCTTGGCCTTGGGACGGGTGTGGTTACCTTTGTTTCAAAAAAAAAAAAAGGTATTGTTTTCCTTAACACTTGAATGAACCATGTATCAAAATGTGGTATAAACCTGAGATGGACTTGCAAACACTTGAATAAACCCTTTCCATGCTATTTGTTTTTAATTTTTCAGATCCACAATAAGATCTTGACCGTGATTGCAATGATAAGTGAGATATGCGCACTAATATGGTACGTTTATCTTTATCGTTGGCCTTCCTCCACTTTATTCAAGTCTCATTTGAAAGTAGAGGATAAAGACTTTTCTTCGATGAAAATGTATTTAATCATGTCTAGCAAGACTCTTCTTAAGTCTGAACTAGATTGGACCATGACTTTCTTGGTTACTCCTGTTCCAGGTATAGTTTGAGCTATATTCCGTTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTGTAGACAATGAAACTCGCAATGATGATTGATGATCATGTCTTCAAGATCTGAGATTGTCTTTTGTGTTTGTTGTTTTTATTTTTTAGTGAGCACAAGGCTTGGAGATTTTTTATTTTTCTTTTCCATTTTCTTATTTGTTTACTTTGGGTTCGAAGTTGATTTTGTCCACATAAATGTATAATCCAAAGGCAGTTCAATGCTTGTGCTAATTTTCTAAATATGACAGCATTCTTTTAGATTTGGAATTGTCTCGTCTTTGTCTTTTTATTTTTTGGTGACACAAGTGGTTTGGAG

mRNA sequence

TTTATTTTGCACGCAGTGGGTTTAGTTTATCGATGATCAATTACAGCTTCGAAACTTCGATCCACACCTTCGAAACTTGGAGCGCTTAGCCAATTCTGAAATTCCATCAAAATGTGGAAGCTCGGACGAGGCGGATTTGGCGATGAAGAAGAGCGTGGCCAGAGCTTGTTGGATGAAGATTCTGAAGATCTATGCTCTCTAACTTCCGTTCAGAGATTGTACGGGTTTGGAGGCTGCTTGACTGGGGGCGTGGTTTGCATGATTGTGTCGCTGATTGTTTTTGCTAAGCCAATCAAGTTTGCTGTACTATTTTCATTTGGCAATGTTTTGGCAGTCGGAAGCACAGCTTTCCTCTTTGGACCTGAGCAACAAATAAGAATGATGTTTGATTCTGTTCGTATATATGCAACAGCTATTTACCTGGGATGTGTGGTTCTAGCTCTTATTTGTGCTCTCTTGATCCACAATAAGATCTTGACCGTGATTGCAATGATAAGTGAGATATGCGCACTAATATGGTATAGTTTGAGCTATATTCCGTTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTGTAGACAATGAAACTCGCAATGATGATTGATGATCATGTCTTCAAGATCTGAGATTGTCTTTTGTGTTTGTTGTTTTTATTTTTTAGTGAGCACAAGGCTTGGAGATTTTTTATTTTTCTTTTCCATTTTCTTATTTGTTTACTTTGGGTTCGAAGTTGATTTTGTCCACATAAATGTATAATCCAAAGGCAGTTCAATGCTTGTGCTAATTTTCTAAATATGACAGCATTCTTTTAGATTTGGAATTGTCTCGTCTTTGTCTTTTTATTTTTTGGTGACACAAGTGGTTTGGAG

Coding sequence (CDS)

ATGTGGAAGCTCGGACGAGGCGGATTTGGCGATGAAGAAGAGCGTGGCCAGAGCTTGTTGGATGAAGATTCTGAAGATCTATGCTCTCTAACTTCCGTTCAGAGATTGTACGGGTTTGGAGGCTGCTTGACTGGGGGCGTGGTTTGCATGATTGTGTCGCTGATTGTTTTTGCTAAGCCAATCAAGTTTGCTGTACTATTTTCATTTGGCAATGTTTTGGCAGTCGGAAGCACAGCTTTCCTCTTTGGACCTGAGCAACAAATAAGAATGATGTTTGATTCTGTTCGTATATATGCAACAGCTATTTACCTGGGATGTGTGGTTCTAGCTCTTATTTGTGCTCTCTTGATCCACAATAAGATCTTGACCGTGATTGCAATGATAAGTGAGATATGCGCACTAATATGGTATAGTTTGAGCTATATTCCGTTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTGTAG

Protein sequence

MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKPIKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL
Homology
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BLAST of Sed0015989 vs. NCBI nr
Match: XP_022945270.1 (vesicle transport protein SFT2B [Cucurbita moschata] >XP_022968626.1 vesicle transport protein SFT2B [Cucurbita maxima] >KAG6574237.1 Vesicle transport protein SFT2B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013303.1 Vesicle transport protein SFT2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.1 bits (749), Expect = 1.4e-75
Identity = 151/161 (93.79%), Postives = 155/161 (96.27%), Query Frame = 0 

Query: 1   MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKP 60
           MWKLG G FGD+EERGQSLLDEDSEDLCSLT VQRLYGFGGCLTGGVVCMIVSL+VFAKP
Sbjct: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60

Query: 61  IKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           IKFA LF+FGNVLAVGSTAFLFGP QQ+RMMFDSVRIYATAIYLGCVVLALICALLIHNK
Sbjct: 61  IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120

Query: 121 ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTVIAM SEICALIWYSLSYIPFARRMVSELMIRFCDTEL
Sbjct: 121 ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 161

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BLAST of Sed0015989 vs. NCBI nr
Match: XP_023541346.1 (vesicle transport protein SFT2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.8 bits (743), Expect = 7.2e-75
Identity = 150/161 (93.17%), Postives = 154/161 (95.65%), Query Frame = 0 

Query: 1   MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKP 60
           MWKLG   FGD+EERGQSLLDEDSEDLCSLT VQRLYGFGGCLTGGVVCMIVSL+VFAKP
Sbjct: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60

Query: 61  IKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           IKFA LF+FGNVLAVGSTAFLFGP QQ+RMMFDSVRIYATAIYLGCVVLALICALLIHNK
Sbjct: 61  IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120

Query: 121 ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTVIAM SEICALIWYSLSYIPFARRMVSELMIRFCDTEL
Sbjct: 121 ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 161

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BLAST of Sed0015989 vs. NCBI nr
Match: XP_022141325.1 (vesicle transport protein SFT2B isoform X3 [Momordica charantia])

HSP 1 Score: 286.6 bits (732), Expect = 1.4e-73
Identity = 147/161 (91.30%), Postives = 154/161 (95.65%), Query Frame = 0 

Query: 1   MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKP 60
           MWKL RG FGD+EERGQSLLDEDSEDLCSL+ VQRLYGFG CLTGGVVCM++SL+VFAKP
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVLSLLVFAKP 60

Query: 61  IKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           IKFAVLF+FGNVLAVGSTAFLFGP QQIRMMFDSVRIYATAIYLGCVVLALICAL IHNK
Sbjct: 61  IKFAVLFTFGNVLAVGSTAFLFGPGQQIRMMFDSVRIYATAIYLGCVVLALICALWIHNK 120

Query: 121 ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTVIA+ISEICALIWYSLSYIPFARRMVSELMIR CDTEL
Sbjct: 121 ILTVIAIISEICALIWYSLSYIPFARRMVSELMIRLCDTEL 161

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BLAST of Sed0015989 vs. NCBI nr
Match: XP_038880533.1 (vesicle transport protein SFT2B [Benincasa hispida])

HSP 1 Score: 284.6 bits (727), Expect = 5.1e-73
Identity = 147/161 (91.30%), Postives = 152/161 (94.41%), Query Frame = 0 

Query: 1   MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKP 60
           MWKL RG F D+EE GQSLLDEDSEDLCSLT VQRLY FGGCLTGGVVCMI+SL+VFAKP
Sbjct: 1   MWKLSRGVFVDDEEHGQSLLDEDSEDLCSLTPVQRLYAFGGCLTGGVVCMILSLLVFAKP 60

Query: 61  IKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           +KFAVLF+FGNVLAVGSTAFLFGP QQIRMMFDSVRIYATAIYLGCVVL LICAL IHNK
Sbjct: 61  LKFAVLFTFGNVLAVGSTAFLFGPGQQIRMMFDSVRIYATAIYLGCVVLGLICALWIHNK 120

Query: 121 ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL
Sbjct: 121 ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 161

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BLAST of Sed0015989 vs. NCBI nr
Match: XP_008441622.1 (PREDICTED: vesicle transport protein SFT2B [Cucumis melo])

HSP 1 Score: 278.5 bits (711), Expect = 3.7e-71
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 0 

Query: 1   MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKP 60
           MWKL  G F D+EER QSLLDEDSEDLCSLT VQRLY FGGCLTGGVVCMI+SL+VFAKP
Sbjct: 1   MWKLSDGVFVDDEERSQSLLDEDSEDLCSLTPVQRLYAFGGCLTGGVVCMILSLLVFAKP 60

Query: 61  IKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           +KFAVLF+FGNVLAVGSTAFLFGP QQIRMMFDSVRI+ATAIYLGCVVLALICAL IHNK
Sbjct: 61  LKFAVLFTFGNVLAVGSTAFLFGPGQQIRMMFDSVRIFATAIYLGCVVLALICALWIHNK 120

Query: 121 ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTV AMISEICALIWYSLSYIPFARRMVS+LM+RFCDTEL
Sbjct: 121 ILTVFAMISEICALIWYSLSYIPFARRMVSQLMVRFCDTEL 161

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BLAST of Sed0015989 vs. ExPASy Swiss-Prot
Match: O95562 (Vesicle transport protein SFT2B OS=Homo sapiens OX=9606 GN=SFT2D2 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.4e-18
Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 0 

Query: 19  LLDEDSEDLCSLTSV---------QRLYGFGGCLTGGVVCMIVSLIVFAKPIK----FAV 78
           L  +D+ED   L+ V          R+ GF  C   G++C ++  ++   P K    FAV
Sbjct: 8   LSGQDTEDRSGLSEVVEASSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKGLHLFAV 67

Query: 79  LFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVI 138
            ++FGN+ ++GST FL GP +Q++ MF+  R+ AT + L C  L L  A   HNK L +I
Sbjct: 68  FYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHNKGLALI 127

Query: 139 AMISEICALIWYSLSYIPFARRMVSE 152
             I +  AL WYSLS+IPFAR  V +
Sbjct: 128 FCILQSLALTWYSLSFIPFARDAVKK 153

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BLAST of Sed0015989 vs. ExPASy Swiss-Prot
Match: Q8VD57 (Vesicle transport protein SFT2B OS=Mus musculus OX=10090 GN=Sft2d2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.2e-17
Identity = 55/146 (37.67%), Postives = 83/146 (56.85%), Query Frame = 0 

Query: 19  LLDEDSEDLCSLTSV---------QRLYGFGGCLTGGVVCMIVSLIVFAKPIK----FAV 78
           L  +D+ED   L+ V          R+ GF  C   G++C ++  ++   P K    FAV
Sbjct: 8   LSGQDTEDRSGLSEVVEASSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKGLGLFAV 67

Query: 79  LFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVI 138
            ++ GN++++GST FL GP +Q++ MF+  R+ AT + L C  L L C+  + NK L +I
Sbjct: 68  FYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTL-CSAFLWNKGLALI 127

Query: 139 AMISEICALIWYSLSYIPFARRMVSE 152
             I +  AL WYSLSYIP+AR  V +
Sbjct: 128 FCILQSLALTWYSLSYIPYARDAVKK 152

[Close]
BLAST of Sed0015989 vs. ExPASy Swiss-Prot
Match: Q8WV19 (Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-14
Identity = 59/154 (38.31%), Postives = 85/154 (55.19%), Query Frame = 0 

Query: 11  DEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIV--SLIVFAKPIK-FAVLF 70
           D+EE+G   L     D  SL+   RL  F  C   GV   I+   L+     IK FAV +
Sbjct: 12  DDEEQG---LTAQVLDASSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGGIKLFAVFY 71

Query: 71  SFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAM 130
           + GN+ A+ ST FL GP +Q++ MF++ R+ AT + L C +  L  AL  H K L V+  
Sbjct: 72  TLGNLAALASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFC 131

Query: 131 ISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           I +  ++ WYSLSYIP+AR    + +I+ C + L
Sbjct: 132 ILQFLSMTWYSLSYIPYAR----DAVIKCCSSLL 158

[Close]
BLAST of Sed0015989 vs. ExPASy Swiss-Prot
Match: Q4FZV2 (Vesicle transport protein SFT2B OS=Rattus norvegicus OX=10116 GN=Sft2d2 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-14
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 0 

Query: 8   GFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVS--LIVFAKPIKFAV 67
           G   E+  G S + E S    SL+   R+ GF  C   G++C ++   L+  ++   FAV
Sbjct: 10  GQDTEDRSGLSEVVESS----SLSWSTRIKGFIVCFALGILCSLLGTLLLWVSRKGLFAV 69

Query: 68  LFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVI 127
            ++ GN+ ++GST FL GP +Q++ MF+  R+ AT + L   VL L C+  + NK L +I
Sbjct: 70  FYTLGNITSIGSTMFLMGPLKQLKRMFEPTRLIATILVLLFFVLTL-CSAFLWNKGLALI 129

Query: 128 AMISEICALIWYSLSYIPFARRMVSE 152
             I +  AL WYSLSYIP+AR  V +
Sbjct: 130 FCILQSLALTWYSLSYIPYARDAVKK 150

[Close]
BLAST of Sed0015989 vs. ExPASy Swiss-Prot
Match: Q5U3Y5 (Vesicle transport protein SFT2A OS=Rattus norvegicus OX=10116 GN=Sft2d1 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-13
Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = 0 

Query: 11  DEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIV--SLIVFAKPIK-FAVLF 70
           D+EE+G   L     D  SL+   RL  F  C   G+   I+   L+     +K FAV +
Sbjct: 12  DDEEQG---LTAQVLDASSLSFNTRLKWFVICFVAGIFFSILGTGLLWLPNGVKLFAVFY 71

Query: 71  SFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAM 130
           + GN+ A+ ST FL GP +Q++ MF++ R+ AT I L C+V  L  AL    K L ++  
Sbjct: 72  TLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFC 131

Query: 131 ISEICALIWYSLSYIPFARRMV 150
           I +  ++ WYSLSYIP+AR  V
Sbjct: 132 ILQFLSMTWYSLSYIPYARDAV 150

[Close]
BLAST of Sed0015989 vs. ExPASy TrEMBL
Match: A0A6J1HVF1 (Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111467788 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.0e-76
Identity = 151/161 (93.79%), Postives = 155/161 (96.27%), Query Frame = 0 

Query: 1   MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKP 60
           MWKLG G FGD+EERGQSLLDEDSEDLCSLT VQRLYGFGGCLTGGVVCMIVSL+VFAKP
Sbjct: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60

Query: 61  IKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           IKFA LF+FGNVLAVGSTAFLFGP QQ+RMMFDSVRIYATAIYLGCVVLALICALLIHNK
Sbjct: 61  IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120

Query: 121 ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTVIAM SEICALIWYSLSYIPFARRMVSELMIRFCDTEL
Sbjct: 121 ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 161

[Close]
BLAST of Sed0015989 vs. ExPASy TrEMBL
Match: A0A6J1G0G6 (Vesicle transport protein OS=Cucurbita moschata OX=3662 GN=LOC111449568 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.0e-76
Identity = 151/161 (93.79%), Postives = 155/161 (96.27%), Query Frame = 0 

Query: 1   MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKP 60
           MWKLG G FGD+EERGQSLLDEDSEDLCSLT VQRLYGFGGCLTGGVVCMIVSL+VFAKP
Sbjct: 1   MWKLGLGVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKP 60

Query: 61  IKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           IKFA LF+FGNVLAVGSTAFLFGP QQ+RMMFDSVRIYATAIYLGCVVLALICALLIHNK
Sbjct: 61  IKFAALFTFGNVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120

Query: 121 ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTVIAM SEICALIWYSLSYIPFARRMVSELMIRFCDTEL
Sbjct: 121 ILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 161

[Close]
BLAST of Sed0015989 vs. ExPASy TrEMBL
Match: A0A6J1CHR6 (Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.5e-74
Identity = 147/161 (91.30%), Postives = 154/161 (95.65%), Query Frame = 0 

Query: 1   MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKP 60
           MWKL RG FGD+EERGQSLLDEDSEDLCSL+ VQRLYGFG CLTGGVVCM++SL+VFAKP
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVLSLLVFAKP 60

Query: 61  IKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           IKFAVLF+FGNVLAVGSTAFLFGP QQIRMMFDSVRIYATAIYLGCVVLALICAL IHNK
Sbjct: 61  IKFAVLFTFGNVLAVGSTAFLFGPGQQIRMMFDSVRIYATAIYLGCVVLALICALWIHNK 120

Query: 121 ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTVIA+ISEICALIWYSLSYIPFARRMVSELMIR CDTEL
Sbjct: 121 ILTVIAIISEICALIWYSLSYIPFARRMVSELMIRLCDTEL 161

[Close]
BLAST of Sed0015989 vs. ExPASy TrEMBL
Match: A0A1S3B3W0 (Vesicle transport protein OS=Cucumis melo OX=3656 GN=LOC103485702 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.8e-71
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 0 

Query: 1   MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKP 60
           MWKL  G F D+EER QSLLDEDSEDLCSLT VQRLY FGGCLTGGVVCMI+SL+VFAKP
Sbjct: 1   MWKLSDGVFVDDEERSQSLLDEDSEDLCSLTPVQRLYAFGGCLTGGVVCMILSLLVFAKP 60

Query: 61  IKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNK 120
           +KFAVLF+FGNVLAVGSTAFLFGP QQIRMMFDSVRI+ATAIYLGCVVLALICAL IHNK
Sbjct: 61  LKFAVLFTFGNVLAVGSTAFLFGPGQQIRMMFDSVRIFATAIYLGCVVLALICALWIHNK 120

Query: 121 ILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           ILTV AMISEICALIWYSLSYIPFARRMVS+LM+RFCDTEL
Sbjct: 121 ILTVFAMISEICALIWYSLSYIPFARRMVSQLMVRFCDTEL 161

[Close]
BLAST of Sed0015989 vs. ExPASy TrEMBL
Match: A0A6J1CIC0 (Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.6e-70
Identity = 147/181 (81.22%), Postives = 154/181 (85.08%), Query Frame = 0 

Query: 1   MWKLGRGGFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIV-------- 60
           MWKL RG FGD+EERGQSLLDEDSEDLCSL+ VQRLYGFG CLTGGVVCM++        
Sbjct: 1   MWKLSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVLAICLVLMS 60

Query: 61  ------------SLIVFAKPIKFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYAT 120
                       SL+VFAKPIKFAVLF+FGNVLAVGSTAFLFGP QQIRMMFDSVRIYAT
Sbjct: 61  YTSHYPASTDDFSLLVFAKPIKFAVLFTFGNVLAVGSTAFLFGPGQQIRMMFDSVRIYAT 120

Query: 121 AIYLGCVVLALICALLIHNKILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTE 162
           AIYLGCVVLALICAL IHNKILTVIA+ISEICALIWYSLSYIPFARRMVSELMIR CDTE
Sbjct: 121 AIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSLSYIPFARRMVSELMIRLCDTE 180

[Close]
BLAST of Sed0015989 vs. TAIR 10
Match: AT5G24170.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-53
Identity = 105/154 (68.18%), Postives = 128/154 (83.12%), Query Frame = 0 

Query: 8   GFGDEEERGQSLLDEDSEDLCSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKPIKFAVLF 67
           G GD +    S L++ SE LC+L++ QR+YGF   L  G++ M +S+IVF  PIKFA+LF
Sbjct: 10  GGGDGDGTTDSFLEDGSEGLCALSTTQRMYGFAASLATGLLLMFLSMIVFGIPIKFALLF 69

Query: 68  SFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAM 127
           +FGNVLA+GSTAFL GPEQQ+ MMFD VR  AT+IY+GCVV+ALICALLIH+KILTV+A+
Sbjct: 70  TFGNVLAIGSTAFLMGPEQQMSMMFDPVRFLATSIYIGCVVVALICALLIHSKILTVLAI 129

Query: 128 ISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 162
           + EICALIWYSLSYIPFARRMVSE+MIR CDTEL
Sbjct: 130 LCEICALIWYSLSYIPFARRMVSEIMIRLCDTEL 163

[Close]
BLAST of Sed0015989 vs. TAIR 10
Match: AT5G23550.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-39
Identity = 83/159 (52.20%), Postives = 113/159 (71.07%), Query Frame = 0 

Query: 10  GDEEERGQSLLDEDS-----EDL---CSLTSVQRLYGFGGCLTGGVVCMIVSLIVFAKPI 69
           G E E  Q   DE+S     EDL   C+LT+ QR YGF  CL+ G+ C ++S++VF  P+
Sbjct: 16  GMEVEDEQQAADEESSLSFMEDLNRNCALTTKQRFYGFAICLSAGLTCTLLSMLVFFNPV 75

Query: 70  KFAVLFSFGNVLAVGSTAFLFGPEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNKI 129
           KF + F+ GN++A+GSTAFL GP++Q+ MM D  RIYATA+YL  +++AL CAL + NK+
Sbjct: 76  KFGITFTLGNLMALGSTAFLIGPQRQVTMMLDPARIYATALYLASIIIALFCALYVRNKL 135

Query: 130 LTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTE 161
           LT++A+I E   LIWYSLSYIPFAR MVS++ +   DTE
Sbjct: 136 LTLLAIILEFTGLIWYSLSYIPFARTMVSKIFMTCFDTE 174

[Close]
BLAST of Sed0015989 vs. TAIR 10
Match: AT4G26550.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 52.0 bits (123), Expect = 5.2e-07
Identity = 35/120 (29.17%), Postives = 65/120 (54.17%), Query Frame = 0 

Query: 29  SLTSVQRLYGFGGCLTGGVVCMIVSLIVF-----AKPIKFAVLFSFGNVLAVGSTAFLFG 88
           S+ S + L  FG  L  GV  + ++  +F       P KFA+ F+ G    +GS   L G
Sbjct: 83  SMPSGKALMYFGLLLASGVFFIFIAFTMFLPVMVLMPQKFAICFTLGCGFIIGSFFALRG 142

Query: 89  PEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMISEICALIWYSLSYIP 144
           P+ Q+  M    R+ +T  ++  +V  +  ++++H+ IL+V+  + ++ AL++Y +SY P
Sbjct: 143 PKNQLAHMSSMERLPSTLGFIATMVGTIYVSMVLHSYILSVLFSVLQVLALVYYCISYFP 202

[Close]
BLAST of Sed0015989 vs. TAIR 10
Match: AT5G56020.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06
Identity = 36/120 (30.00%), Postives = 63/120 (52.50%), Query Frame = 0 

Query: 29  SLTSVQRLYGFGGCLTGGVVCMIVSLIVF-----AKPIKFAVLFSFGNVLAVGSTAFLFG 88
           S+ S + L  FG  L  GV  + ++  +F       P KFA+ F+ G    +GS   L G
Sbjct: 88  SMPSGKALMYFGLLLASGVFFIFIAFTMFLPVMVLMPQKFAICFTLGCGFIIGSFFALRG 147

Query: 89  PEQQIRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMISEICALIWYSLSYIP 144
           P+ Q+  M  + R+  T  ++  +V  +  ++++H+ IL+VI    ++ AL +Y +SY P
Sbjct: 148 PQNQLAHMSSAERLPLTLGFIATMVGTIYVSMVLHSYILSVIFSALQVIALAYYCISYFP 207

The following BLAST results are available for this feature:
BLAST of Sed0015989 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945270.11.4e-7593.79vesicle transport protein SFT2B [Cucurbita moschata] >XP_022968626.1 vesicle tra... [more]
XP_023541346.17.2e-7593.17vesicle transport protein SFT2B [Cucurbita pepo subsp. pepo][more]
XP_022141325.11.4e-7391.30vesicle transport protein SFT2B isoform X3 [Momordica charantia][more]
XP_038880533.15.1e-7391.30vesicle transport protein SFT2B [Benincasa hispida][more]
XP_008441622.13.7e-7188.82PREDICTED: vesicle transport protein SFT2B [Cucumis melo][more]
BLAST of Sed0015989 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O955626.4e-1839.04Vesicle transport protein SFT2B OS=Homo sapiens OX=9606 GN=SFT2D2 PE=1 SV=1[more]
Q8VD574.2e-1737.67Vesicle transport protein SFT2B OS=Mus musculus OX=10090 GN=Sft2d2 PE=1 SV=1[more]
Q8WV191.9e-1438.31Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1[more]
Q4FZV21.9e-1438.36Vesicle transport protein SFT2B OS=Rattus norvegicus OX=10116 GN=Sft2d2 PE=2 SV=... [more]
Q5U3Y52.1e-1338.73Vesicle transport protein SFT2A OS=Rattus norvegicus OX=10116 GN=Sft2d1 PE=2 SV=... [more]
BLAST of Sed0015989 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HVF17.0e-7693.79Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111467788 PE=3 SV=1[more]
A0A6J1G0G67.0e-7693.79Vesicle transport protein OS=Cucurbita moschata OX=3662 GN=LOC111449568 PE=3 SV=... [more]
A0A6J1CHR66.5e-7491.30Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV... [more]
A0A1S3B3W01.8e-7188.82Vesicle transport protein OS=Cucumis melo OX=3656 GN=LOC103485702 PE=3 SV=1[more]
A0A6J1CIC02.6e-7081.22Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV... [more]
BLAST of Sed0015989 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G24170.11.7e-5368.18Got1/Sft2-like vescicle transport protein family [more]
AT5G23550.12.3e-3952.20Got1/Sft2-like vescicle transport protein family [more]
AT4G26550.15.2e-0729.17Got1/Sft2-like vescicle transport protein family [more]
AT5G56020.12.0e-0630.00Got1/Sft2-like vescicle transport protein family [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007305Vesicle transport protein, Got1/SFT2-likePFAMPF04178Got1coord: 47..136
e-value: 1.1E-26
score: 93.4
NoneNo IPR availablePANTHERPTHR23137:SF29VESICLE TRANSPORT PROTEINcoord: 15..136
IPR011691Vesicle transport protein SFT2PANTHERPTHR23137UNCHARACTERIZEDcoord: 15..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015989.1Sed0015989.1mRNA
Sed0015989.2Sed0015989.2mRNA
Sed0015989.3Sed0015989.3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane