Sed0015968 (gene) Chayote v1

Overview
NameSed0015968
Typegene
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase
LocationLG13: 11157939 .. 11158220 (+)
RNA-Seq ExpressionSed0015968
SyntenySed0015968
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCGAGATGTTGTTGAATCTGCAGAATCAAAATGCTAAGGCAACAGTGAGAAGCATGGAGGCAACACCACTTGGTTCCGCTAATAATCAGGCGCAACCAACTTTGATGGAACCATGCGTTCTATGCGGCGATGGTCACGCATATGAAGATTGCCCTCATAGCGGTGCTTCCGTAAACTTTGTTAATAGCCAATCAACAAATCACCAGAATAATCCATATTCTAACACTTACAATCTGGGATGGAGGAATCACCCCAACTTCTCATGGAGGGATCAATGA

mRNA sequence

ATGCGCGAGATGTTGTTGAATCTGCAGAATCAAAATGCTAAGGCAACAGTGAGAAGCATGGAGGCAACACCACTTGGTTCCGCTAATAATCAGGCGCAACCAACTTTGATGGAACCATGCGTTCTATGCGGCGATGGTCACGCATATGAAGATTGCCCTCATAGCGGTGCTTCCGTAAACTTTGTTAATAGCCAATCAACAAATCACCAGAATAATCCATATTCTAACACTTACAATCTGGGATGGAGGAATCACCCCAACTTCTCATGGAGGGATCAATGA

Coding sequence (CDS)

ATGCGCGAGATGTTGTTGAATCTGCAGAATCAAAATGCTAAGGCAACAGTGAGAAGCATGGAGGCAACACCACTTGGTTCCGCTAATAATCAGGCGCAACCAACTTTGATGGAACCATGCGTTCTATGCGGCGATGGTCACGCATATGAAGATTGCCCTCATAGCGGTGCTTCCGTAAACTTTGTTAATAGCCAATCAACAAATCACCAGAATAATCCATATTCTAACACTTACAATCTGGGATGGAGGAATCACCCCAACTTCTCATGGAGGGATCAATGA

Protein sequence

MREMLLNLQNQNAKATVRSMEATPLGSANNQAQPTLMEPCVLCGDGHAYEDCPHSGASVNFVNSQSTNHQNNPYSNTYNLGWRNHPNFSWRDQ
Homology
BLAST of Sed0015968 vs. NCBI nr
Match: XP_030487620.1 (uncharacterized protein LOC115704559 [Cannabis sativa])

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 40  CVLCGDGHAYEDCPHSGASVNFVNSQSTNHQNNPYSNTYNLGWRNHPNFSWRDQ 94
           CV CGDGH +E+CP + ASV +V +Q+ N  NNPYSN+YN GW++HPNFSW  Q
Sbjct: 129 CVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPGWKHHPNFSWGGQ 182

BLAST of Sed0015968 vs. NCBI nr
Match: XP_015387726.1 (uncharacterized protein LOC107177802 [Citrus sinensis] >XP_015387727.1 uncharacterized protein LOC107177803 [Citrus sinensis])

HSP 1 Score: 77.8 bits (190), Expect = 5.5e-11
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 40  CVLCGDGHAYEDCPHSGASVNFVNSQSTNHQNNPYSNTYNLGWRNHPNFSWRDQ 94
           CV CG+GH +++CP +  SVN+V S +  +Q+NPYSNTYN GWR HPNFSW +Q
Sbjct: 308 CVYCGEGHLFDNCPGNPTSVNYVGSFNRQNQDNPYSNTYNPGWRQHPNFSWSNQ 361

BLAST of Sed0015968 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 77.0 bits (188), Expect = 9.4e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 40  CVLCGDGHAYEDCPHSGASVNFVNSQSTNHQNNPYSNTYNLGWRNHPNFSWRDQ 94
           CV CGDGH +E+CP + ASV +V +Q+ N  NNPYSN+YN  W++HPNFSW  Q
Sbjct: 297 CVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHHPNFSWGGQ 350

BLAST of Sed0015968 vs. NCBI nr
Match: XP_030510138.1 (uncharacterized protein LOC115724905 [Cannabis sativa])

HSP 1 Score: 77.0 bits (188), Expect = 9.4e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 40  CVLCGDGHAYEDCPHSGASVNFVNSQSTNHQNNPYSNTYNLGWRNHPNFSWRDQ 94
           CV CGDGH +E+CP + ASV +V +Q+ N  NNPYSN+YN  W++HPNFSW  Q
Sbjct: 256 CVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHHPNFSWGGQ 309

BLAST of Sed0015968 vs. NCBI nr
Match: XP_030498047.1 (uncharacterized protein LOC115713707 [Cannabis sativa])

HSP 1 Score: 77.0 bits (188), Expect = 9.4e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 40  CVLCGDGHAYEDCPHSGASVNFVNSQSTNHQNNPYSNTYNLGWRNHPNFSWRDQ 94
           CV CGDGH +E+CP + ASV +V +Q+ N  NNPYSN+YN  W++HPNFSW  Q
Sbjct: 137 CVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHHPNFSWGGQ 190

BLAST of Sed0015968 vs. ExPASy TrEMBL
Match: U5CZQ0 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00005610 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.6e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 40 CVLCGDGHAYEDCPHSGASVNFVNSQSTNHQNNPYSNTYNLGWRNHPNFSWRDQ 94
          CV CGDGH +E+CP + ASV +V +Q+ N  NNPYSN+YN  W++HPNFSW  Q
Sbjct: 30 CVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHHPNFSWGGQ 83

BLAST of Sed0015968 vs. ExPASy TrEMBL
Match: A0A6J1EEI2 (uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC111433394 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 35  TLMEPCVLCGDGHAYEDCPHSGASVNFVNSQST--NHQNNPYSNTYNLGWRNHPNFSWRD 94
           T  E CV CG+ H ++ CP + AS+ +V +Q++  N +NNP+SNTYN GWRNHPNFSW+ 
Sbjct: 316 TAAESCVYCGEEHTFDQCPSNPASIFYVGNQASQGNPKNNPFSNTYNPGWRNHPNFSWKG 375

BLAST of Sed0015968 vs. ExPASy TrEMBL
Match: A0A6J1H7E4 (uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC111461168 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 35  TLMEPCVLCGDGHAYEDCPHSGASVNFVNSQST--NHQNNPYSNTYNLGWRNHPNFSWRD 94
           T  E CV CG+ H ++ CP + AS+ +V +Q++  N +NNP SNTYN GWRNHPNFSW+ 
Sbjct: 307 TATESCVYCGEEHTFDQCPRNPASILYVRNQASQGNQKNNPSSNTYNPGWRNHPNFSWKG 366

BLAST of Sed0015968 vs. ExPASy TrEMBL
Match: A0A6J0ZYV0 (uncharacterized protein LOC110413413 OS=Herrania umbratica OX=108875 GN=LOC110413413 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 40  CVLCGDGHAYEDCPHSGASVNFVNSQSTNHQNNPYSNTYNLGWRNHPNFSW 91
           C +CGD H+Y+ CP++  SV FV +     QNNPYSNTYN GWRNHPNFSW
Sbjct: 313 CEMCGDSHSYDQCPYNSESVQFVGN-FNRQQNNPYSNTYNPGWRNHPNFSW 362

BLAST of Sed0015968 vs. ExPASy TrEMBL
Match: A0A6J0ZX64 (LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica OX=108875 GN=LOC110412945 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 40  CVLCGDGHAYEDCPHSGASVNFVNSQSTNHQNNPYSNTYNLGWRNHPNFSW 91
           C +CGD H+Y+ CP++  SV FV +     QNNPYSNTYN GWRNHPNFSW
Sbjct: 313 CEMCGDSHSYDQCPYNSESVQFVGN-FNRQQNNPYSNTYNPGWRNHPNFSW 362

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030487620.11.9e-1161.11uncharacterized protein LOC115704559 [Cannabis sativa][more]
XP_015387726.15.5e-1159.26uncharacterized protein LOC107177802 [Citrus sinensis] >XP_015387727.1 uncharact... [more]
XP_030509259.19.4e-1159.26uncharacterized protein LOC115723937 [Cannabis sativa][more]
XP_030510138.19.4e-1159.26uncharacterized protein LOC115724905 [Cannabis sativa][more]
XP_030498047.19.4e-1159.26uncharacterized protein LOC115713707 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
U5CZQ04.6e-1159.26Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00005610... [more]
A0A6J1EEI21.0e-1054.10uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC1114333... [more]
A0A6J1H7E41.7e-1054.10uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
A0A6J0ZYV02.3e-1062.75uncharacterized protein LOC110413413 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
A0A6J0ZX642.3e-1062.75LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015968.1Sed0015968.1mRNA