Sed0015935 (gene) Chayote v1

Overview
NameSed0015935
Typegene
OrganismSechium edule (Chayote v1)
Descriptionjosephin-like protein
LocationLG14: 6546763 .. 6547411 (-)
RNA-Seq ExpressionSed0015935
SyntenySed0015935
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTCTCTATTTTTCTCTCCTCACATTTTCAAAAAAAAAAAGAAAAATTCATAAAAAAAAATGTCAAAAATAAGCAGAAGAGTGAGTTTCAGCTCAGATCAAGCCACGCCCAAGGCCGCCGCCGTGGCAAGAAGCAAGAAACGAGTGATCGCCGTGTTCTGGGTTTTCCGGCTGCCGAAATCCGCCGGATTCTCGCCGGAAAGTTTCCTCCGCCGCATCGGCGCTAAAGTGGCCAAAGTTCTACGCTACGTGTCTTTGAAAAAAAAATCAAAATCTTCCAAAAATAGTAACGGGTCGGGTTCGGGTTCGGGTTCCGATTTTAACCGATCCCGTTCGGTTTCAGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTTAAAGATTGCATCCAGTTCTTCAACTCTTCTTCTACTTCTTCAGCTGTTTGATTTTTTATTTTTTTTTAATCTGAATTTATCAATGATACTTCTGTAACTTTTAAGGTAAATTTCCTCAATTATTAGTATTATTATTATTATTTTTTTCTAAAATGGTTAAATGAGTGTTCTTTTTTTTTTTTTTTAAGGAGGTTAAATGAGTGTAGTTCTTCAACTTTTTGGGTTGTGTATTTAACTTGTGAAATAAATTTGAATGGGTTTATGAAGTGG

mRNA sequence

CTTCTCTCTATTTTTCTCTCCTCACATTTTCAAAAAAAAAAAGAAAAATTCATAAAAAAAAATGTCAAAAATAAGCAGAAGAGTGAGTTTCAGCTCAGATCAAGCCACGCCCAAGGCCGCCGCCGTGGCAAGAAGCAAGAAACGAGTGATCGCCGTGTTCTGGGTTTTCCGGCTGCCGAAATCCGCCGGATTCTCGCCGGAAAGTTTCCTCCGCCGCATCGGCGCTAAAGTGGCCAAAGTTCTACGCTACGTGTCTTTGAAAAAAAAATCAAAATCTTCCAAAAATAGTAACGGGTCGGGTTCGGGTTCGGGTTCCGATTTTAACCGATCCCGTTCGGTTTCAGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTTAAAGATTGCATCCAGTTCTTCAACTCTTCTTCTACTTCTTCAGCTGTTTGATTTTTTATTTTTTTTTAATCTGAATTTATCAATGATACTTCTGTAACTTTTAAGGTAAATTTCCTCAATTATTAGTATTATTATTATTATTTTTTTCTAAAATGGTTAAATGAGTGTTCTTTTTTTTTTTTTTTAAGGAGGTTAAATGAGTGTAGTTCTTCAACTTTTTGGGTTGTGTATTTAACTTGTGAAATAAATTTGAATGGGTTTATGAAGTGG

Coding sequence (CDS)

ATGTCAAAAATAAGCAGAAGAGTGAGTTTCAGCTCAGATCAAGCCACGCCCAAGGCCGCCGCCGTGGCAAGAAGCAAGAAACGAGTGATCGCCGTGTTCTGGGTTTTCCGGCTGCCGAAATCCGCCGGATTCTCGCCGGAAAGTTTCCTCCGCCGCATCGGCGCTAAAGTGGCCAAAGTTCTACGCTACGTGTCTTTGAAAAAAAAATCAAAATCTTCCAAAAATAGTAACGGGTCGGGTTCGGGTTCGGGTTCCGATTTTAACCGATCCCGTTCGGTTTCAGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTTAAAGATTGCATCCAGTTCTTCAACTCTTCTTCTACTTCTTCAGCTGTTTGA

Protein sequence

MSKISRRVSFSSDQATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAKVAKVLRYVSLKKKSKSSKNSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDCIQFFNSSSTSSAV
Homology
BLAST of Sed0015935 vs. NCBI nr
Match: KGN54361.1 (hypothetical protein Csa_017994 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.5e-32
Identity = 89/118 (75.42%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 6   RRVSFSSDQATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAKVAKVLRYVS 65
           RRVSFSSDQA   AAA +R +KR I VFWVFRLPKSA FSPE FLRR+GAK+AKVLRYVS
Sbjct: 9   RRVSFSSDQA---AAAKSRIRKRPIIVFWVFRLPKSARFSPEKFLRRLGAKMAKVLRYVS 68

Query: 66  LKKKSKSSKNSNGSGSGSGSD-FNRSRSVSDSMEESHRAEAVKDCIQFFNSSSTSSAV 123
           L+K+S SS NS+   + +GS  FNRS SVSDSMEESHRAEAVKDCIQFFNSS++SSAV
Sbjct: 69  LRKRSTSSTNSSSLKNNNGSSKFNRSHSVSDSMEESHRAEAVKDCIQFFNSSNSSSAV 123

BLAST of Sed0015935 vs. NCBI nr
Match: KAG6595400.1 (hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027410.1 hypothetical protein SDJN02_11422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30
Identity = 84/124 (67.74%), Postives = 99/124 (79.84%), Query Frame = 0

Query: 1   MSKI--SRRVSFSSDQATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAKVA 60
           MSKI  SR VS  SD+ T K  A+ R++KRVI V WVFRLPKS  FSPESFLRR+GAKVA
Sbjct: 1   MSKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA 60

Query: 61  KVLRYVSLKKKSKSSKNSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDCIQFFNSSST 120
           KVLR VSLKK+S+ SK ++     + ++FNRS SVSDSMEESHRAEAV+DCI FFNSSS+
Sbjct: 61  KVLRAVSLKKRSECSKKAS-----AATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSS 119

Query: 121 SSAV 123
           SSA+
Sbjct: 121 SSAL 119

BLAST of Sed0015935 vs. NCBI nr
Match: XP_023518083.1 (uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.7 bits (356), Expect = 4.1e-30
Identity = 82/122 (67.21%), Postives = 97/122 (79.51%), Query Frame = 0

Query: 1   MSKI--SRRVSFSSDQATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAKVA 60
           MSKI  SR VS  SD+ T K   + R++KRVI V WVFRLPKS  FSPESFLRR+GAKVA
Sbjct: 1   MSKIRSSRGVSLRSDEGTAKPTTLQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA 60

Query: 61  KVLRYVSLKKKSKSSKNSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDCIQFFNSSST 120
           KV+RYVSLKK+S+ SK ++     + ++FNRS SVSDSMEESHRAEAVKDCI FFNSSS+
Sbjct: 61  KVVRYVSLKKRSECSKKAS-----AATNFNRSHSVSDSMEESHRAEAVKDCIHFFNSSSS 117

BLAST of Sed0015935 vs. NCBI nr
Match: KAG6603596.1 (hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 5.9e-29
Identity = 84/125 (67.20%), Postives = 96/125 (76.80%), Query Frame = 0

Query: 5   SRRVSFSSDQ-----ATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAKVAK 64
           SRRVSFSSDQ     +  K AA  R++KR+I VFWVFRLPKS    P SFLRRIGAKV K
Sbjct: 8   SRRVSFSSDQGAAAASAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRIGAKVVK 67

Query: 65  VLRYVSLKKKSKS----SKNSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDCIQFFNS 121
           VLRYVSL+K+S S    S +S+ S   SGS+FNRS SVS+SMEESHRAEAVKDCI FFNS
Sbjct: 68  VLRYVSLRKRSASPASCSSSSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFNS 127

BLAST of Sed0015935 vs. NCBI nr
Match: XP_022950374.1 (josephin-like protein [Cucurbita moschata])

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 0

Query: 5   SRRVSFSSDQ------ATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAKVA 64
           SRRVSFSSDQ      +  K AA  R++KR+I VFWVFRLPKS    P SFLRRIGAKV 
Sbjct: 8   SRRVSFSSDQGAAAATSAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRIGAKVV 67

Query: 65  KVLRYVSLKKKSKSSKNSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDCIQFFNSSST 121
           KVLRYVSL+K+S S  +S  S   SGS+FNRS SVS+SMEESHRAEAVKDCI FFNSSS+
Sbjct: 68  KVLRYVSLRKRSASPASS--SSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFNSSSS 127

BLAST of Sed0015935 vs. ExPASy TrEMBL
Match: A0A0A0L2K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.2e-33
Identity = 89/118 (75.42%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 6   RRVSFSSDQATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAKVAKVLRYVS 65
           RRVSFSSDQA   AAA +R +KR I VFWVFRLPKSA FSPE FLRR+GAK+AKVLRYVS
Sbjct: 9   RRVSFSSDQA---AAAKSRIRKRPIIVFWVFRLPKSARFSPEKFLRRLGAKMAKVLRYVS 68

Query: 66  LKKKSKSSKNSNGSGSGSGSD-FNRSRSVSDSMEESHRAEAVKDCIQFFNSSSTSSAV 123
           L+K+S SS NS+   + +GS  FNRS SVSDSMEESHRAEAVKDCIQFFNSS++SSAV
Sbjct: 69  LRKRSTSSTNSSSLKNNNGSSKFNRSHSVSDSMEESHRAEAVKDCIQFFNSSNSSSAV 123

BLAST of Sed0015935 vs. ExPASy TrEMBL
Match: A0A6J1GFL9 (josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 0

Query: 5   SRRVSFSSDQ------ATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAKVA 64
           SRRVSFSSDQ      +  K AA  R++KR+I VFWVFRLPKS    P SFLRRIGAKV 
Sbjct: 8   SRRVSFSSDQGAAAATSAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRIGAKVV 67

Query: 65  KVLRYVSLKKKSKSSKNSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDCIQFFNSSST 121
           KVLRYVSL+K+S S  +S  S   SGS+FNRS SVS+SMEESHRAEAVKDCI FFNSSS+
Sbjct: 68  KVLRYVSLRKRSASPASS--SSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFNSSSS 127

BLAST of Sed0015935 vs. ExPASy TrEMBL
Match: A0A6J1IJN3 (uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 82/120 (68.33%), Postives = 94/120 (78.33%), Query Frame = 0

Query: 5   SRRVSFSSDQ----ATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAKVAKV 64
           SRRVSFSSDQ    A  K AA  R++KR+I VFWVF+LPKS    P SFLRRIGAKV KV
Sbjct: 8   SRRVSFSSDQGAAAAAAKPAAFPRNRKRLITVFWVFQLPKSGRLFPGSFLRRIGAKVVKV 67

Query: 65  LRYVSLKKKSKSSKNSNGSGS-GSGSDFNRSRSVSDSMEESHRAEAVKDCIQFFNSSSTS 120
           LRYVSL+K+S S  + + S S  SGS+FNRS SVS+SMEESHRAEAVKDCI FFNSSS++
Sbjct: 68  LRYVSLRKRSASPASCSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFNSSSSA 127

BLAST of Sed0015935 vs. ExPASy TrEMBL
Match: A0A5B7C456 (Putative josephin-like protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_044915 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.3e-13
Identity = 58/124 (46.77%), Postives = 77/124 (62.10%), Query Frame = 0

Query: 3   KISRRVSFSSD--------QATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIG 62
           K+SRRV+FS D        Q       VA ++KR+ A  W FRLPKS+ FSP   L+ IG
Sbjct: 9   KMSRRVNFSPDVNDKPTTFQKRGGGNKVALNRKRIAAGSWSFRLPKSSIFSPLRLLKPIG 68

Query: 63  AKVAKVLRYVSLKKKSKSSKNSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDCIQFFN 119
           AKVA+VL  +S+KK+S        S   S +   RSRS +D + +SHRAEA++DCI+F N
Sbjct: 69  AKVARVLHLLSMKKRS--------SRKVSSASLARSRSYADQI-DSHRAEAIEDCIEFLN 123

BLAST of Sed0015935 vs. ExPASy TrEMBL
Match: A0A061EQH2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 0

Query: 3   KISRRVSFSSD---------QATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRI 62
           + S+RVSFS D         +          +++RV+A  + FRL +S+ FSP   LRR+
Sbjct: 4   RTSKRVSFSPDVNERPTILLKHGGSTGRTRGNRRRVVAGIFTFRLVRSSRFSPARLLRRL 63

Query: 63  GAKVAKVLRYVSLKKKSKSSKNSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDCIQFF 121
           GAKVA+ LR+VS+++ S S K S+     S S+  RSRS+++S+ +SHRAEA++DCI+F 
Sbjct: 64  GAKVARALRFVSMRRNSNSHKVSS-----SSSNLARSRSLAESI-DSHRAEAIEDCIEFL 123

BLAST of Sed0015935 vs. TAIR 10
Match: AT5G01225.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 8.8e-07
Identity = 41/124 (33.06%), Postives = 65/124 (52.42%), Query Frame = 0

Query: 3   KISRRVSFSSDQAT------PKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAK 62
           + S+RV FS D         P  ++    ++RV+   + F    S   + +  LR IG +
Sbjct: 4   RASKRVRFSPDPEANDELIFPTHSSSRHGRRRVVVGIFSFSFSDSPA-TTKRLLRSIGDR 63

Query: 63  VAKVLRYVSLKKKSKSSKNSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDCIQFFNSS 121
           V K  RY+S  + +  +  S+ S   S     +S+S++ S  ESHRAEA++DCI+F NS 
Sbjct: 64  VGKTFRYISFGRMNTKTTPSSSSNVSSSLYLMKSKSLNGS--ESHRAEAIEDCIEFLNSC 123

BLAST of Sed0015935 vs. TAIR 10
Match: AT3G09032.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 4.4e-06
Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 0

Query: 6   RRVSFS-SDQAT-----PKAAAVARS--KKRVIAVFWVFRLPKSAGFSPESFLRRIGAKV 65
           +RVSF+ + +AT     PK   ++ S   +R + +  +      +  +    ++RIGA+ 
Sbjct: 7   KRVSFNPNPEATDEPIFPKHDGLSSSHHSRRRVVLVGILSFGLRSSPAARKLIQRIGARF 66

Query: 66  AKVLRYVSLKKKSKSSK--------NSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDC 117
           AK LR++S ++ +   +        +S+ S S S     RS+SV+++  ESHRAEA++DC
Sbjct: 67  AKTLRFISFRRNTTDRRKTSSFLLPSSSSSSSSSAIYMKRSKSVNET--ESHRAEAIEDC 126

BLAST of Sed0015935 vs. TAIR 10
Match: AT1G07300.1 (josephin protein-related )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 0

Query: 37  RLPKSAGFSPESFLRRIGAKVAKVLRYVSLKKKSKSSKNSNGSGSGSGSDFNRSRSVSDS 96
           RLP+    +    ++ +G K AK LR V ++KK +S  +   S SG          +   
Sbjct: 44  RLPRKTEVTAAKLIKHLGCKFAKGLRLVVMRKKKRSPPSKVSSFSGRSQP-----PIIPI 103

Query: 97  MEESHRAEAVKDCIQFFNSSST 119
             +SHR+EA++DCIQF NSSS+
Sbjct: 104 NNDSHRSEAIEDCIQFINSSSS 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54361.11.5e-3275.42hypothetical protein Csa_017994 [Cucumis sativus][more]
KAG6595400.12.4e-3067.74hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023518083.14.1e-3067.21uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo][more]
KAG6603596.15.9e-2967.20hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022950374.12.2e-2868.03josephin-like protein [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2K77.2e-3375.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1[more]
A0A6J1GFL91.1e-2868.03josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1[more]
A0A6J1IJN31.4e-2868.33uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703... [more]
A0A5B7C4568.3e-1346.77Putative josephin-like protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din... [more]
A0A061EQH21.9e-1243.31Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G01225.18.8e-0733.06unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G09032.14.4e-0632.28unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G07300.12.2e-0536.59josephin protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..100
NoneNo IPR availablePANTHERPTHR34355JOSEPHIN-LIKE PROTEINcoord: 1..119
NoneNo IPR availablePANTHERPTHR34355:SF1JOSEPHIN-LIKE PROTEINcoord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015935.1Sed0015935.1mRNA