Sed0015935 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTCTCTCTATTTTTCTCTCCTCACATTTTCAAAAAAAAAAAGAAAAATTCATAAAAAAAAATGTCAAAAATAAGCAGAAGAGTGAGTTTCAGCTCAGATCAAGCCACGCCCAAGGCCGCCGCCGTGGCAAGAAGCAAGAAACGAGTGATCGCCGTGTTCTGGGTTTTCCGGCTGCCGAAATCCGCCGGATTCTCGCCGGAAAGTTTCCTCCGCCGCATCGGCGCTAAAGTGGCCAAAGTTCTACGCTACGTGTCTTTGAAAAAAAAATCAAAATCTTCCAAAAATAGTAACGGGTCGGGTTCGGGTTCGGGTTCCGATTTTAACCGATCCCGTTCGGTTTCAGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTTAAAGATTGCATCCAGTTCTTCAACTCTTCTTCTACTTCTTCAGCTGTTTGATTTTTTATTTTTTTTTAATCTGAATTTATCAATGATACTTCTGTAACTTTTAAGGTAAATTTCCTCAATTATTAGTATTATTATTATTATTTTTTTCTAAAATGGTTAAATGAGTGTTCTTTTTTTTTTTTTTTAAGGAGGTTAAATGAGTGTAGTTCTTCAACTTTTTGGGTTGTGTATTTAACTTGTGAAATAAATTTGAATGGGTTTATGAAGTGG CTTCTCTCTATTTTTCTCTCCTCACATTTTCAAAAAAAAAAAGAAAAATTCATAAAAAAAAATGTCAAAAATAAGCAGAAGAGTGAGTTTCAGCTCAGATCAAGCCACGCCCAAGGCCGCCGCCGTGGCAAGAAGCAAGAAACGAGTGATCGCCGTGTTCTGGGTTTTCCGGCTGCCGAAATCCGCCGGATTCTCGCCGGAAAGTTTCCTCCGCCGCATCGGCGCTAAAGTGGCCAAAGTTCTACGCTACGTGTCTTTGAAAAAAAAATCAAAATCTTCCAAAAATAGTAACGGGTCGGGTTCGGGTTCGGGTTCCGATTTTAACCGATCCCGTTCGGTTTCAGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTTAAAGATTGCATCCAGTTCTTCAACTCTTCTTCTACTTCTTCAGCTGTTTGATTTTTTATTTTTTTTTAATCTGAATTTATCAATGATACTTCTGTAACTTTTAAGGTAAATTTCCTCAATTATTAGTATTATTATTATTATTTTTTTCTAAAATGGTTAAATGAGTGTTCTTTTTTTTTTTTTTTAAGGAGGTTAAATGAGTGTAGTTCTTCAACTTTTTGGGTTGTGTATTTAACTTGTGAAATAAATTTGAATGGGTTTATGAAGTGG ATGTCAAAAATAAGCAGAAGAGTGAGTTTCAGCTCAGATCAAGCCACGCCCAAGGCCGCCGCCGTGGCAAGAAGCAAGAAACGAGTGATCGCCGTGTTCTGGGTTTTCCGGCTGCCGAAATCCGCCGGATTCTCGCCGGAAAGTTTCCTCCGCCGCATCGGCGCTAAAGTGGCCAAAGTTCTACGCTACGTGTCTTTGAAAAAAAAATCAAAATCTTCCAAAAATAGTAACGGGTCGGGTTCGGGTTCGGGTTCCGATTTTAACCGATCCCGTTCGGTTTCAGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTTAAAGATTGCATCCAGTTCTTCAACTCTTCTTCTACTTCTTCAGCTGTTTGA MSKISRRVSFSSDQATPKAAAVARSKKRVIAVFWVFRLPKSAGFSPESFLRRIGAKVAKVLRYVSLKKKSKSSKNSNGSGSGSGSDFNRSRSVSDSMEESHRAEAVKDCIQFFNSSSTSSAV Homology
BLAST of Sed0015935 vs. NCBI nr
Match: KGN54361.1 (hypothetical protein Csa_017994 [Cucumis sativus]) HSP 1 Score: 149.8 bits (377), Expect = 1.5e-32 Identity = 89/118 (75.42%), Postives = 100/118 (84.75%), Query Frame = 0
BLAST of Sed0015935 vs. NCBI nr
Match: KAG6595400.1 (hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027410.1 hypothetical protein SDJN02_11422, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30 Identity = 84/124 (67.74%), Postives = 99/124 (79.84%), Query Frame = 0
BLAST of Sed0015935 vs. NCBI nr
Match: XP_023518083.1 (uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 141.7 bits (356), Expect = 4.1e-30 Identity = 82/122 (67.21%), Postives = 97/122 (79.51%), Query Frame = 0
BLAST of Sed0015935 vs. NCBI nr
Match: KAG6603596.1 (hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 137.9 bits (346), Expect = 5.9e-29 Identity = 84/125 (67.20%), Postives = 96/125 (76.80%), Query Frame = 0
BLAST of Sed0015935 vs. NCBI nr
Match: XP_022950374.1 (josephin-like protein [Cucurbita moschata]) HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28 Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 0
BLAST of Sed0015935 vs. ExPASy TrEMBL
Match: A0A0A0L2K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 7.2e-33 Identity = 89/118 (75.42%), Postives = 100/118 (84.75%), Query Frame = 0
BLAST of Sed0015935 vs. ExPASy TrEMBL
Match: A0A6J1GFL9 (josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28 Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 0
BLAST of Sed0015935 vs. ExPASy TrEMBL
Match: A0A6J1IJN3 (uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28 Identity = 82/120 (68.33%), Postives = 94/120 (78.33%), Query Frame = 0
BLAST of Sed0015935 vs. ExPASy TrEMBL
Match: A0A5B7C456 (Putative josephin-like protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_044915 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 8.3e-13 Identity = 58/124 (46.77%), Postives = 77/124 (62.10%), Query Frame = 0
BLAST of Sed0015935 vs. ExPASy TrEMBL
Match: A0A061EQH2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12 Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 0
BLAST of Sed0015935 vs. TAIR 10
Match: AT5G01225.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 8.8e-07 Identity = 41/124 (33.06%), Postives = 65/124 (52.42%), Query Frame = 0
BLAST of Sed0015935 vs. TAIR 10
Match: AT3G09032.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 4.4e-06 Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 0
BLAST of Sed0015935 vs. TAIR 10
Match: AT1G07300.1 (josephin protein-related ) HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05 Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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