Sed0015868 (gene) Chayote v1

Overview
NameSed0015868
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG02: 49352125 .. 49352711 (-)
RNA-Seq ExpressionSed0015868
SyntenySed0015868
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTTTCTTTGGAACTTGAAGATGATTTGTTCTTTGCTGATTTGAGCAGACAGCTCTCTCTTCTCATGGATGATAGCGAAGACCCTCTTCCTCATCATCCACATGTTTCTCTTCAGGTACTCCTCTTTCAAAATTTCAATCAGTTCGCCACAGCTGCACGGTTAATACGTTTTTCTAAGAGGTCATAGGTTCGAATCCTCGATCAAAACGAGGGTAGGTTGTAATAGTTTCAGATTTTCAATCACTTTGAGTCTTGTCCAATCTGAACCTACTTTAGTTTCTCTGTTGTTTCTATGAATTCAAATAAGATTTGATCAATATGCAGGCTTTCTCTCATGTTAGCCACCACCAGCCCACACAGCCACTCGTGGTGCATGACCATGCCACCGCTGCCGCCGTGGCCGCCGCATACAACGGCGTATGCAAGGGGACCGGTGTGTTCATCCCTAGGTCTCTGAAGCCTGCAAAAAAACAGAGGCGTGGAAGGTACAATAACATGAAGGCAAGACAGTTTCCAATCGCTATTGATGTGGTGAACTCACAAGTATCCAACAACAATTCGTTGCGTCCGAAAAAGGGTTAA

mRNA sequence

ATGGAAGTTTCTTTGGAACTTGAAGATGATTTGTTCTTTGCTGATTTGAGCAGACAGCTCTCTCTTCTCATGGATGATAGCGAAGACCCTCTTCCTCATCATCCACATGTTTCTCTTCAGGCTTTCTCTCATGTTAGCCACCACCAGCCCACACAGCCACTCGTGGTGCATGACCATGCCACCGCTGCCGCCGTGGCCGCCGCATACAACGGCGTATGCAAGGGGACCGGTGTGTTCATCCCTAGGTCTCTGAAGCCTGCAAAAAAACAGAGGCGTGGAAGGTACAATAACATGAAGGCAAGACAGTTTCCAATCGCTATTGATGTGGTGAACTCACAAGTATCCAACAACAATTCGTTGCGTCCGAAAAAGGGTTAA

Coding sequence (CDS)

ATGGAAGTTTCTTTGGAACTTGAAGATGATTTGTTCTTTGCTGATTTGAGCAGACAGCTCTCTCTTCTCATGGATGATAGCGAAGACCCTCTTCCTCATCATCCACATGTTTCTCTTCAGGCTTTCTCTCATGTTAGCCACCACCAGCCCACACAGCCACTCGTGGTGCATGACCATGCCACCGCTGCCGCCGTGGCCGCCGCATACAACGGCGTATGCAAGGGGACCGGTGTGTTCATCCCTAGGTCTCTGAAGCCTGCAAAAAAACAGAGGCGTGGAAGGTACAATAACATGAAGGCAAGACAGTTTCCAATCGCTATTGATGTGGTGAACTCACAAGTATCCAACAACAATTCGTTGCGTCCGAAAAAGGGTTAA

Protein sequence

MEVSLELEDDLFFADLSRQLSLLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDHATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKARQFPIAIDVVNSQVSNNNSLRPKKG
Homology
BLAST of Sed0015868 vs. NCBI nr
Match: XP_022933798.1 (uncharacterized protein LOC111441102 [Cucurbita moschata] >XP_022933806.1 uncharacterized protein LOC111441102 [Cucurbita moschata])

HSP 1 Score: 188.3 bits (477), Expect = 3.9e-44
Identity = 104/127 (81.89%), Postives = 113/127 (88.98%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLS-LLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDH 60
           MEV+LELEDDLFFADLSRQLS LLMDD+EDPLPHHPHVSLQA +H   HQP +PL VHD 
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAH-GGHQPARPLAVHDQ 60

Query: 61  ATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKA-RQFPIAIDVVNSQVSNNN 120
           A AAA+  AY+GV KGTGVFIPRSL+PA+KQRRGRYNN+KA RQFPIAID VNSQVSNNN
Sbjct: 61  A-AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAID-VNSQVSNNN 120

Query: 121 SLRPKKG 126
           SLRPKKG
Sbjct: 121 SLRPKKG 124

BLAST of Sed0015868 vs. NCBI nr
Match: XP_022973676.1 (uncharacterized protein LOC111472261 [Cucurbita maxima])

HSP 1 Score: 188.0 bits (476), Expect = 5.1e-44
Identity = 103/127 (81.10%), Postives = 113/127 (88.98%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLS-LLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDH 60
           MEV+LELEDDLFFADLSRQLS LLMDD+EDPLPHHPHVSLQA +H   HQP +PL VHD 
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAH-GGHQPARPLAVHDQ 60

Query: 61  ATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKA-RQFPIAIDVVNSQVSNNN 120
           A AAA+ AAY+GV KGTGVFIPRSL+PA+KQRRGRYNN+KA RQFPI +D VNSQVSNNN
Sbjct: 61  A-AAAIVAAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPITVD-VNSQVSNNN 120

Query: 121 SLRPKKG 126
           SLRPKKG
Sbjct: 121 SLRPKKG 124

BLAST of Sed0015868 vs. NCBI nr
Match: XP_023539236.1 (uncharacterized protein LOC111799938 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 5.1e-44
Identity = 104/127 (81.89%), Postives = 113/127 (88.98%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLS-LLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDH 60
           MEV+LELEDDLFFADLSRQLS LLMDD+EDPLPHHPHVSLQA +H   HQP +PL VHD 
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAH-GGHQPARPLAVHDQ 60

Query: 61  ATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKA-RQFPIAIDVVNSQVSNNN 120
           A AAA+ AAY+GV KGTGVFIPRSL+PA+KQRRGRYNN+KA RQFPIAID VNSQVSNNN
Sbjct: 61  A-AAAIVAAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAID-VNSQVSNNN 120

Query: 121 SLRPKKG 126
           SL PKKG
Sbjct: 121 SLHPKKG 124

BLAST of Sed0015868 vs. NCBI nr
Match: KAG6597461.1 (hypothetical protein SDJN03_10641, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 104/127 (81.89%), Postives = 113/127 (88.98%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLS-LLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDH 60
           MEV+LELEDDLFFADLSRQLS LLMDD+EDPLPHHPHVSLQA +H   HQP +PL VHD 
Sbjct: 12  MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAH-GGHQPARPLAVHDQ 71

Query: 61  ATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKA-RQFPIAIDVVNSQVSNNN 120
           A AAA+ AAY+GV KGTGVFIPRSL+ A+KQRRGRYNN+KA RQFPIAID VNSQVSNNN
Sbjct: 72  A-AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYNNIKANRQFPIAID-VNSQVSNNN 131

Query: 121 SLRPKKG 126
           SLRPKKG
Sbjct: 132 SLRPKKG 135

BLAST of Sed0015868 vs. NCBI nr
Match: KAG7028920.1 (hypothetical protein SDJN02_10103 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 104/127 (81.89%), Postives = 113/127 (88.98%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLS-LLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDH 60
           MEV+LELEDDLFFADLSRQLS LLMDD+EDPLPHHPHVSLQA +H   HQP +PL VHD 
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAH-GGHQPARPLAVHDQ 60

Query: 61  ATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKA-RQFPIAIDVVNSQVSNNN 120
           A AAA+ AAY+GV KGTGVFIPRSL+ A+KQRRGRYNN+KA RQFPIAID VNSQVSNNN
Sbjct: 61  A-AAAIVAAYSGVSKGTGVFIPRSLQSARKQRRGRYNNIKANRQFPIAID-VNSQVSNNN 120

Query: 121 SLRPKKG 126
           SLRPKKG
Sbjct: 121 SLRPKKG 124

BLAST of Sed0015868 vs. ExPASy TrEMBL
Match: A0A6J1F5U9 (uncharacterized protein LOC111441102 OS=Cucurbita moschata OX=3662 GN=LOC111441102 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 104/127 (81.89%), Postives = 113/127 (88.98%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLS-LLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDH 60
           MEV+LELEDDLFFADLSRQLS LLMDD+EDPLPHHPHVSLQA +H   HQP +PL VHD 
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAH-GGHQPARPLAVHDQ 60

Query: 61  ATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKA-RQFPIAIDVVNSQVSNNN 120
           A AAA+  AY+GV KGTGVFIPRSL+PA+KQRRGRYNN+KA RQFPIAID VNSQVSNNN
Sbjct: 61  A-AAAIVVAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPIAID-VNSQVSNNN 120

Query: 121 SLRPKKG 126
           SLRPKKG
Sbjct: 121 SLRPKKG 124

BLAST of Sed0015868 vs. ExPASy TrEMBL
Match: A0A6J1I9A5 (uncharacterized protein LOC111472261 OS=Cucurbita maxima OX=3661 GN=LOC111472261 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.5e-44
Identity = 103/127 (81.10%), Postives = 113/127 (88.98%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLS-LLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDH 60
           MEV+LELEDDLFFADLSRQLS LLMDD+EDPLPHHPHVSLQA +H   HQP +PL VHD 
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLPHHPHVSLQALAH-GGHQPARPLAVHDQ 60

Query: 61  ATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKA-RQFPIAIDVVNSQVSNNN 120
           A AAA+ AAY+GV KGTGVFIPRSL+PA+KQRRGRYNN+KA RQFPI +D VNSQVSNNN
Sbjct: 61  A-AAAIVAAYSGVSKGTGVFIPRSLQPARKQRRGRYNNIKANRQFPITVD-VNSQVSNNN 120

Query: 121 SLRPKKG 126
           SLRPKKG
Sbjct: 121 SLRPKKG 124

BLAST of Sed0015868 vs. ExPASy TrEMBL
Match: A0A0A0LAE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.7e-41
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLS-LLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDH 60
           MEV+LELEDDLFFADLSRQLS LLMDD+EDPLP HPHVSLQA SH  H+ PT+PL  H+H
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-HPHVSLQALSHGVHY-PTRPLATHEH 60

Query: 61  ATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKA-RQFPIAIDVVNSQV-SNN 120
           A AAAVAAAYNGV KGTGVFIPRSL+PA+KQRRGR+NN+K  RQF I+ID VNSQV SNN
Sbjct: 61  AAAAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISID-VNSQVPSNN 120

Query: 121 NSLRPKKG 126
           +S+RPKKG
Sbjct: 121 HSMRPKKG 125

BLAST of Sed0015868 vs. ExPASy TrEMBL
Match: A0A5D3D068 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00190 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.5e-38
Identity = 100/128 (78.12%), Postives = 111/128 (86.72%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLS-LLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDH 60
           MEV+LELEDDLFFADLSRQLS LLMDD+EDPLP  PHVSLQA SH  H+ PT+PL  H+H
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-RPHVSLQALSHGVHY-PTRPLATHEH 60

Query: 61  ATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKA-RQFPIAIDVVNSQVSNNN 120
           A AAAVAAAYNGV KGTGVFIPRSL+PA+KQRRGR+NN+K  RQF I+ID VNSQVS+NN
Sbjct: 61  A-AAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISID-VNSQVSSNN 120

Query: 121 SL-RPKKG 126
            L RPKKG
Sbjct: 121 HLMRPKKG 124

BLAST of Sed0015868 vs. ExPASy TrEMBL
Match: A0A1S3AX25 (uncharacterized protein LOC103483733 OS=Cucumis melo OX=3656 GN=LOC103483733 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.5e-38
Identity = 100/128 (78.12%), Postives = 111/128 (86.72%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLS-LLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDH 60
           MEV+LELEDDLFFADLSRQLS LLMDD+EDPLP  PHVSLQA SH  H+ PT+PL  H+H
Sbjct: 1   MEVALELEDDLFFADLSRQLSLLLMDDNEDPLP-RPHVSLQALSHGVHY-PTRPLATHEH 60

Query: 61  ATAAAVAAAYNGVCKGTGVFIPRSLKPAKKQRRGRYNNMKA-RQFPIAIDVVNSQVSNNN 120
           A AAAVAAAYNGV KGTGVFIPRSL+PA+KQRRGR+NN+K  RQF I+ID VNSQVS+NN
Sbjct: 61  A-AAAVAAAYNGVSKGTGVFIPRSLQPARKQRRGRHNNIKPNRQFHISID-VNSQVSSNN 120

Query: 121 SL-RPKKG 126
            L RPKKG
Sbjct: 121 HLMRPKKG 124

BLAST of Sed0015868 vs. TAIR 10
Match: AT3G06070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-08
Identity = 44/132 (33.33%), Postives = 72/132 (54.55%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLSLLM--DDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHD 60
           M + LEL+DD+FFAD+S+QL+LL+  +D ++P+     VS Q     ++     P ++++
Sbjct: 1   MAMELELDDDVFFADISKQLNLLITDEDEQNPISLSSSVSFQGLFRGNYQTSATPYMMYN 60

Query: 61  HATAAAVAAAYNGV--CKGTGVFIPRSLKPAKK-------QRRGRY--NNMKARQFPIAI 120
                     YN +   KGTGVFIPRS +P +K       +++GR+  + +  +QFP   
Sbjct: 61  E------QINYNVIRESKGTGVFIPRSSQPRRKHNHHPHQKKQGRFIGSFIPKQQFPHHG 120

BLAST of Sed0015868 vs. TAIR 10
Match: AT5G19190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 1   MEVSLELEDDLFFADLSRQLSLLMDDSEDPLPHHPHVSLQAFSHVSHHQPTQPLVVHDHA 60
           M + LEL+DD+FFAD+S+Q+SLL+ D ++      H++  + S  S     Q L    + 
Sbjct: 1   MAMELELDDDVFFADISKQISLLIMDEDE------HLNPVSLSSSSSSLSFQGLFRGGYQ 60

Query: 61  TAAAVAAAYNGVCKGTGVFIPRSLKPAKK----QRRGRYNNMKARQ 103
           TA  +        KGTGVFIP+S +P ++    Q++GRY++  A+Q
Sbjct: 61  TAPYMYQQEQS--KGTGVFIPKSSQPRRRPHHHQKQGRYSSFNAKQ 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022933798.13.9e-4481.89uncharacterized protein LOC111441102 [Cucurbita moschata] >XP_022933806.1 unchar... [more]
XP_022973676.15.1e-4481.10uncharacterized protein LOC111472261 [Cucurbita maxima][more]
XP_023539236.15.1e-4481.89uncharacterized protein LOC111799938 [Cucurbita pepo subsp. pepo][more]
KAG6597461.11.1e-4381.89hypothetical protein SDJN03_10641, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7028920.11.1e-4381.89hypothetical protein SDJN02_10103 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F5U91.9e-4481.89uncharacterized protein LOC111441102 OS=Cucurbita moschata OX=3662 GN=LOC1114411... [more]
A0A6J1I9A52.5e-4481.10uncharacterized protein LOC111472261 OS=Cucurbita maxima OX=3661 GN=LOC111472261... [more]
A0A0A0LAE79.7e-4178.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1[more]
A0A5D3D0684.5e-3878.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AX254.5e-3878.13uncharacterized protein LOC103483733 OS=Cucumis melo OX=3656 GN=LOC103483733 PE=... [more]
Match NameE-valueIdentityDescription
AT3G06070.11.3e-0833.33unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G19190.12.1e-0836.79unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34956OS05G0397300 PROTEINcoord: 1..117
NoneNo IPR availablePANTHERPTHR34956:SF2OS05G0397300 PROTEINcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015868.1Sed0015868.1mRNA