Sed0015800 (gene) Chayote v1

Overview
NameSed0015800
Typegene
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L29, chloroplastic-like
LocationLG13: 6865355 .. 6868277 (-)
RNA-Seq ExpressionSed0015800
SyntenySed0015800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCTAAAAAAGAAGGTTTTTTAGGGGTAGTTTTCGTAAATGGAGACAATGAAAAAGGGCAAAAAAGGAACAGAAAAAAAAGAAGCGCAAGAGAGCTTATCTTCATCTTCAATGGCATGCTGAGCTTTCTTCATCCAACAAAAAGCGCTGTGACTGAACAAAACCACACACAGACTCCGCAAAGATGATAAACCTTTCAATTTCATCGCCTTCGAGCATTTCTCTCCCTCCAAAAATTCTCAGCTCCACCTCCAAATCCTCCTTCAATGGCGCTCAAATCCGTTTCCCGTTATCGTTTCGCGTTCCCCCAAAAACGGCATGCACCGGCGGCCGCAATTCGTCGGCGGTAATGATGGCGAAGAAGGATGAGGAATTGAAGAAAATCAGAGCGAAGAGCACTGAGGAAATCAACGAAGAGGTCGTCGATCTTAAGGGCGAGCTTCTTATGCTTCGGCTTCAGAAATCGGCTCGCAATGAGTTCAAGTCCAGCGAATTCCGCCGTATGCGTAAACGGGTAATCCTTTTCTCTTATCGATTCAGATTCTTAGTTGATTTAGCGTTCGATTCCGTTTCCTATCATCCACATTTTTGCTTATTTTGTGCTGAATTTGCTGGTAGGGTTGAATGTTGGGGCTCAGTCGCTTTTAATGGGGTTTTGTAGCTGTTGGAATCTAAGGTTCTTGGGTTTTGTTTACCCTAAGCAAATTGGCAATAAATTTGAAAAGTAAACAAAACTTCTCAAACCATACATTAGGAATCCATTTGGGATTTAAATTTTAGTTCACAATCCACAAAAATTAACAAAACTACATTTAACCATGTTGAGACGATGAGGACGGCAACCCTGACTTCACATTGTTCACTTTGGGCATAACCCTTATGCCTTTTGTCTTTTTGGCATTAGTGAGATGTTTTTCATCACTTATATACCCATAATCTTGTCCCTATCTAACCAATGTGCAACAATTTTTTTTGTATCCTAACAATCTTCCCCTCGAACAAAGATCGAACATCCCCTCAAATAGTTAATCCGTCTAGGTGATATTAAGATCAACTCTGCTTTTCCTGAGAGTTTGCTGCCAATTCGATAGAATGAATTTTTGCCATTATTATGTCTCTAGGCTCCTAACTTATTTGTAATACATTGGAAAATTCTACCAACATGATTAAATTGAGGGTATGGCTCTGACAACACTCGTTAAGGACGATAACCCTGAGCTAATTTCCACTTTAGTATTATATTTTTCCCTTTGGGCATAACCCTCGTGGTTTAGTTTTTTGTTTCATCCTAAAGGTCTTACGCTTATGGAGATGGTTGTGGTCACTTAAATATCCAAGATGTTCCTCTTGTCTAACCAATATCTCAACAAAAGCTTCATTCGAAGGAAGATAGAGAAACCCAATGCAAGCAAGGAGCCCTTAAACTTCAAAAACCCAAGTAGAATCAGGAATTGAATTAGGATTTCTATGCAATAAAAGCTTCAAATTAAACCAAGTTTAACACCAAATGAAGAAATAGCTCTCTTATGGATTATAGGTTAAAGATGTGTTTAGCACTATCTTCTATGAACTCTTCAACTATACATGGTAGCCACCTATTTAGGAATAAACTTTTTACGGGTTTACTTGACATCCAAATGTTGTAGGGTCAAACGATATGTCCCGTGAAAATAGACAAGATGTGTGATAGCTAGCCCAGACACTCACTTAACATCCAGATGTTGTAGGGTCAAGCAGTGTGTCCTGTGAAATTAGTTGAGATGCGCTAGCTGGCTCAGACATTTATGAATCACGAAAAATTAAAAAAAAAAGAAAAAGAAAAAAACTCCAATGCCTTCACACTAACCATTTTGTTTTAGATTCCGAAAATGCATGAAGCATGAGTGAGCTTTCTCCGCTATTCCATGATTTTAGCTATGGTACCCTTTTGAATAGTTGAAAATCCCTAATGCAATCTCATATGGGACCCTATATTGCAATTTCATATATTAATGAAATTATTTCTTATCCAAAAAAAGAAAAGAAAATAGATTGAGCTTCAATTTGGGTTTATAGGAACTTATCTGTTTATATGAAGTTAGTTATTTGGGAAGCTAAACCTAGTTTGATCATGAATGAAGCATGTTTAATGTACAAGGGTGGTGCTTTTGAATTTGATCCACCTTTAGGTTTCTCATGACTTTTCTACCAAAACTTACTTCATATTTAGTGCATAATGTGCATAATGTTACAAGTCCTGAATGGCTGAATCATAAAAAGAAATTGAACAGAAAATGTTTATTTAAACATGATGAATTTAGTAAAACTAGCATTTTTTTTTTTGGAATTCACTTATGATCATGATGGAGGGACATTAAGCACTGCAATATGTGCTTGTTCTCGTGGTAAGACTTGGGCATTCTCATAGTCGTATCACCCATGGCAGATTGCTCGGATGCTAACTGTAAAACGCGAACGAGAGATCGAAGAGGGAGTGGGGAAAAGGCTGTCAAGAAAGCTAGACAGGAAGTGGAAGAAGAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGCAGCTGAGAAATCTGCTTGATCCAACCAGATATGTTTTCAAACATAATTGTAGCTTTATGAGTTGTTCTTTTCTTAAAAAAAAAACTAAAAAAAAGAGTATGAAGTTGTTGAGAATGCTATTTAAACAACGTTCTAGATTTTTTGTTTTTATTTTTCCTGAAAAAATCTGATAAATTGGAAATAGATTTTGAGGGGATCATGTTGAATTCTTATTCTTTCATGTCTACGCCTTTTATCTGAGATAAACCAAAGCAAACTCGAATCCCCTCAAGCCCAAATTGAAGAACTCTTTGTTTACCATATCAGGGGAATTGAATGGAATGAGAATGTTAGGTTAAAC

mRNA sequence

GTTCTAAAAAAGAAGGTTTTTTAGGGGTAGTTTTCGTAAATGGAGACAATGAAAAAGGGCAAAAAAGGAACAGAAAAAAAAGAAGCGCAAGAGAGCTTATCTTCATCTTCAATGGCATGCTGAGCTTTCTTCATCCAACAAAAAGCGCTGTGACTGAACAAAACCACACACAGACTCCGCAAAGATGATAAACCTTTCAATTTCATCGCCTTCGAGCATTTCTCTCCCTCCAAAAATTCTCAGCTCCACCTCCAAATCCTCCTTCAATGGCGCTCAAATCCGTTTCCCGTTATCGTTTCGCGTTCCCCCAAAAACGGCATGCACCGGCGGCCGCAATTCGTCGGCGGTAATGATGGCGAAGAAGGATGAGGAATTGAAGAAAATCAGAGCGAAGAGCACTGAGGAAATCAACGAAGAGGTCGTCGATCTTAAGGGCGAGCTTCTTATGCTTCGGCTTCAGAAATCGGCTCGCAATGAGTTCAAGTCCAGCGAATTCCGCCGTATGCGTAAACGGATTGCTCGGATGCTAACTGTAAAACGCGAACGAGAGATCGAAGAGGGAGTGGGGAAAAGGCTGTCAAGAAAGCTAGACAGGAAGTGGAAGAAGAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGCAGCTGAGAAATCTGCTTGATCCAACCAGATATGTTTTCAAACATAATTGTAGCTTTATGAGTTGTTCTTTTCTTAAAAAAAAAACTAAAAAAAAGAGTATGAAGTTGTTGAGAATGCTATTTAAACAACGTTCTAGATTTTTTGTTTTTATTTTTCCTGAAAAAATCTGATAAATTGGAAATAGATTTTGAGGGGATCATGTTGAATTCTTATTCTTTCATGTCTACGCCTTTTATCTGAGATAAACCAAAGCAAACTCGAATCCCCTCAAGCCCAAATTGAAGAACTCTTTGTTTACCATATCAGGGGAATTGAATGGAATGAGAATGTTAGGTTAAAC

Coding sequence (CDS)

ATGATAAACCTTTCAATTTCATCGCCTTCGAGCATTTCTCTCCCTCCAAAAATTCTCAGCTCCACCTCCAAATCCTCCTTCAATGGCGCTCAAATCCGTTTCCCGTTATCGTTTCGCGTTCCCCCAAAAACGGCATGCACCGGCGGCCGCAATTCGTCGGCGGTAATGATGGCGAAGAAGGATGAGGAATTGAAGAAAATCAGAGCGAAGAGCACTGAGGAAATCAACGAAGAGGTCGTCGATCTTAAGGGCGAGCTTCTTATGCTTCGGCTTCAGAAATCGGCTCGCAATGAGTTCAAGTCCAGCGAATTCCGCCGTATGCGTAAACGGATTGCTCGGATGCTAACTGTAAAACGCGAACGAGAGATCGAAGAGGGAGTGGGGAAAAGGCTGTCAAGAAAGCTAGACAGGAAGTGGAAGAAGAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGCAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKKDEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA
Homology
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BLAST of Sed0015800 vs. NCBI nr
Match: XP_038903244.1 (50S ribosomal protein L29, chloroplastic [Benincasa hispida])

HSP 1 Score: 277.7 bits (709), Expect = 6.6e-71
Identity = 153/168 (91.07%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKK 60
           MINLSI+SPS++S+P K+L+STSKSSFNG QIRFP SFRVPPKTACTGGRNSS VMMAK+
Sbjct: 1   MINLSIASPSTVSIPLKVLTSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSSVVMMAKR 60

Query: 61  DEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           +EELK+IRAKSTEEI EEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKSTEEIKEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Sed0015800 vs. NCBI nr
Match: XP_022941582.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031295.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 151/168 (89.88%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKK 60
           MINLSI+SPSS+S P K LSSTSKSSFNG QIRFP SFRVPPKTA TGGRNSS VMMAK+
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  DEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           +EELK+IR K+TEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Sed0015800 vs. NCBI nr
Match: KAG6577307.1 (50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015397.1 50S ribosomal protein L29, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.7 bits (696), Expect = 2.1e-69
Identity = 150/168 (89.29%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKK 60
           M+NLSI+SPSS+++P K LSSTSKSSFNG QIRFP SFRVPPK ACTGGRNS  VMMAK+
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  DEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           +EELK IRAK+TEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAEAAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Sed0015800 vs. NCBI nr
Match: XP_022985118.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 272.7 bits (696), Expect = 2.1e-69
Identity = 151/168 (89.88%), Postives = 158/168 (94.05%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKK 60
           MINLSI+SPSS+++P K LSSTSKSSFNG QIRFP SFRVPPK AC GGRNS  VMMAK+
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  DEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           +EELK IRAK+TEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAEAAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Sed0015800 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 3.6e-69
Identity = 150/168 (89.29%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKK 60
           M+NLSI+SPSS+S P K LSSTSKSSFNG QIRFP SFRVPPKTA TGGRNSS VMMAK+
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  DEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           +EELK+IR K+TEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Sed0015800 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-44
Identity = 106/168 (63.10%), Postives = 138/168 (82.14%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSS--TSKSSFNGAQIRFPLSFRVP-PKTACTGGRNSSAVMM 60
           M++LSI++P + ++  +  +S  ++ SSF+G +I+  +S RVP   T  +     S VMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKKDEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +K++ ELK+IR+K+TE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA EAAE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]
BLAST of Sed0015800 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 8.4e-37
Identity = 94/161 (58.39%), Postives = 120/161 (74.53%), Query Frame = 0 

Query: 10  SSISLPPKILSSTSKSSFNGAQ---IRFPLSFRVPPKTACTGGRNSSAVMMAKKDEELKK 69
           S ++ PPK    T KSSF+G +   +    S R+  +T       SS V+M KK++ELK+
Sbjct: 14  SGLTSPPKSTLLT-KSSFHGLRLPSVNLSSSLRLRVQTP-----PSSVVVMVKKEDELKE 73

Query: 70  IRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEG 129
           +R K+ E++NEE++ LKGEL MLRLQ+SAR  FK S+F RMRKR+ARMLTVKREREIE+G
Sbjct: 74  LRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQG 133

Query: 130 VGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKS 168
           VGKRLSRKLD+ WK+SIVVRPPPSLKKL+E+  A   AEK+
Sbjct: 134 VGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]
BLAST of Sed0015800 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.1e-34
Identity = 78/108 (72.22%), Postives = 97/108 (89.81%), Query Frame = 0 

Query: 50  RNSSAVMMAKKDEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRK 109
           R ++ V MAK+++EL++IRA +TE++ EEVVDLKGEL +LRL++SAR EFK+SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 110 RIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE 158
           RIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]
BLAST of Sed0015800 vs. ExPASy Swiss-Prot
Match: B8HMR2 (50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmC PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.4e-04
Identity = 21/63 (33.33%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 63  ELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRERE 122
           ++K +   S  E+  +++DLK +L  LRLQK+ R E K  +F+ +R ++A+++T++R+R+
Sbjct: 5   KMKDLLDLSDAEVETQILDLKRQLFQLRLQKATRQEVKPHQFKHLRHQLAQLMTLERQRQ 64

Query: 123 IEE 126
           + +
Sbjct: 65  LTQ 67

[Close]
BLAST of Sed0015800 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.8e-70
Identity = 151/168 (89.88%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKK 60
           MINLSI+SPSS+S P K LSSTSKSSFNG QIRFP SFRVPPKTA TGGRNSS VMMAK+
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  DEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           +EELK+IR K+TEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Sed0015800 vs. ExPASy TrEMBL
Match: A0A6J1JCM6 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483200 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.0e-69
Identity = 151/168 (89.88%), Postives = 158/168 (94.05%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKK 60
           MINLSI+SPSS+++P K LSSTSKSSFNG QIRFP SFRVPPK AC GGRNS  VMMAK+
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  DEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           +EELK IRAK+TEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAEAAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Sed0015800 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 150/168 (89.29%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKK 60
           M+NLSI+SPSS+S P K LSSTSKSSFNG QIRFP SFRVPPKTA TGGRNSS VMMAK+
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  DEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           +EELK+IR K+TEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Sed0015800 vs. ExPASy TrEMBL
Match: A0A6J1EMX4 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435958 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 8.1e-67
Identity = 148/168 (88.10%), Postives = 156/168 (92.86%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKK 60
           M+NLSI+SPSS+++P K LSSTSKSSFNG QIRFP S RVPPK ACTGGRNS  VMMAK+
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  DEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           +EELK IRAK+TEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE   EAAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE---EAAEKSA 165

[Close]
BLAST of Sed0015800 vs. ExPASy TrEMBL
Match: A0A6J1C3N4 (50S ribosomal protein L29, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008086 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.6e-65
Identity = 146/168 (86.90%), Postives = 154/168 (91.67%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSSTSKSSFNGAQIRFPLSFRVPPKTACTGGRNSSAVMMAKK 60
           MINLSI+SPS++SLP  +LSSTSKSSF G QIR P S RV  KT C G RNSS VMMAK+
Sbjct: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60

Query: 61  DEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           +EELK+IRAK+TEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Sed0015800 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-45
Identity = 106/168 (63.10%), Postives = 138/168 (82.14%), Query Frame = 0 

Query: 1   MINLSISSPSSISLPPKILSS--TSKSSFNGAQIRFPLSFRVP-PKTACTGGRNSSAVMM 60
           M++LSI++P + ++  +  +S  ++ SSF+G +I+  +S RVP   T  +     S VMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKKDEELKKIRAKSTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +K++ ELK+IR+K+TE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEAAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA EAAE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

The following BLAST results are available for this feature:
BLAST of Sed0015800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903244.16.6e-7191.0750S ribosomal protein L29, chloroplastic [Benincasa hispida][more]
XP_022941582.11.6e-6989.8850S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1... [more]
KAG6577307.12.1e-6989.2950S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022985118.12.1e-6989.8850S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
XP_022977189.13.6e-6989.2950S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
BLAST of Sed0015800 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJP31.9e-4463.1050S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
P822488.4e-3758.3950S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P... [more]
Q9SWI65.1e-3472.2250S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1[more]
B8HMR29.4e-0433.3350S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
BLAST of Sed0015800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FMW57.8e-7089.8850S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1JCM61.0e-6989.8850S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1IQR31.7e-6989.2950S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1EMX48.1e-6788.1050S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1C3N42.6e-6586.9050S ribosomal protein L29, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of Sed0015800 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65220.11.3e-4563.10Ribosomal L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..168
NoneNo IPR availablePANTHERPTHR10916:SF1SUBFAMILY NOT NAMEDcoord: 1..166
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 1..166
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 65..121
e-value: 2.61143E-14
score: 61.7347
IPR001854Ribosomal protein L29/L35TIGRFAMTIGR00012TIGR00012coord: 67..121
e-value: 4.3E-16
score: 56.7
IPR001854Ribosomal protein L29/L35PFAMPF00831Ribosomal_L29coord: 65..121
e-value: 2.8E-14
score: 52.8
IPR001854Ribosomal protein L29/L35HAMAPMF_00374Ribosomal_L29coord: 64..121
score: 13.645231
IPR036049Ribosomal protein L29/L35 superfamilyGENE3D1.10.287.310coord: 61..124
e-value: 2.1E-14
score: 55.1
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 64..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015800.1Sed0015800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome