Sed0015767 (gene) Chayote v1

Overview


Name	Sed0015767
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Prolamin_like domain-containing protein
Location	LG09: 4527534 .. 4527935 (+)
RNA-Seq Expression	Sed0015767
Synteny	Sed0015767

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGCAAACCAATACAGTGGTGACATTAATGGGGATTCTTTCATGGACAATAATTTTGGCAACCTTAGTTCCACGCTCAATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTCCGACCATGTTTGGATATGATAAAGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAATAAGAAAAAATTGGATCTAAATTGTTGCGTCTTCGTTAAATTCATGGGAAAGAGTTGTGTTGAAGCTTTTACCTTTTGGTTTGACTTTCCGGATTTGGAAGCCTTGAAACCTAATCCCATGATGGCATATAAAAATTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATTTTAA

mRNA sequence

ATGACAAAGCAAACCAATACAGTGGTGACATTAATGGGGATTCTTTCATGGACAATAATTTTGGCAACCTTAGTTCCACGCTCAATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTCCGACCATGTTTGGATATGATAAAGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAATAAGAAAAAATTGGATCTAAATTGTTGCGTCTTCGTTAAATTCATGGGAAAGAGTTGTGTTGAAGCTTTTACCTTTTGGTTTGACTTTCCGGATTTGGAAGCCTTGAAACCTAATCCCATGATGGCATATAAAAATTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATTTTAA

Coding sequence (CDS)

ATGACAAAGCAAACCAATACAGTGGTGACATTAATGGGGATTCTTTCATGGACAATAATTTTGGCAACCTTAGTTCCACGCTCAATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTCCGACCATGTTTGGATATGATAAAGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAATAAGAAAAAATTGGATCTAAATTGTTGCGTCTTCGTTAAATTCATGGGAAAGAGTTGTGTTGAAGCTTTTACCTTTTGGTTTGACTTTCCGGATTTGGAAGCCTTGAAACCTAATCCCATGATGGCATATAAAAATTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATTTTAA

Protein sequence

MTKQTNTVVTLMGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIKNAKCQVELYKYYFNINKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPMMAYKNCVRRLDAPPPSKF

Homology

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BLAST of Sed0015767 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 6.4e-45
Identity = 83/120 (69.17%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 14  ILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIKNAKCQVELYKYYFN 73
           IL + I L+ LV  S   +DYNSPIW+GWVDEDRGYTLRPCLD +++AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  INKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPMMAYKNCVRRLDAPPPSKF 133
           I+KK+LDLNCCVFVK MGK C +AFTFW+ FP LE  +PNPM  Y NC+ RLDAPPP+ F
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

[Close]

BLAST of Sed0015767 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 8.6e-42
Identity = 86/135 (63.70%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MTKQTNTVVTLMGILSWTIILATLVPRSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMI 60
           M   TNTV  ++ IL   + LA LV  SMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KNAKCQVELYKYYFNINKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPMMAY 120
           K+AKCQV+LY YYFNI+KK+LDL CCVFVK MGK C  AF  W++FP LE  +PNPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 KNCVRRLDAPPPSKF 134
            NCV RL A PP+ F
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of Sed0015767 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.2 bits (448), Expect = 9.5e-41
Identity = 83/122 (68.03%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 12  MGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIKNAKCQVELYKYY 71
           M IL   I LA L   S A DDYNSPIW+ WVDEDRG  LRPCLDM+K+AKCQVELY YY
Sbjct: 4   MVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELYNYY 63

Query: 72  FNINKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPMMAYKNCVRRLDAPPPS 131
           FNI+KK+LDLNCCVFVK MGK C  AF  WF FP+ E  + NPM  YKNCV RLDA PP+
Sbjct: 64  FNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDALPPA 123

Query: 132 KF 134
            F
Sbjct: 124 PF 125

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BLAST of Sed0015767 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.5e-33
Identity = 70/112 (62.50%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 4   QTNTVVTLMGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIKNAKC 63
           +TN +  ++ +LS TI LA LV      +DYNS IWN W+DEDR +TLRPCLD +++AKC
Sbjct: 30  KTNAMRAMLILLS-TINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKC 89

Query: 64  QVELYKYYFNINKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPM 116
           QVELY YYFNI+K++LDLNCCVFVK MGK C +AFTFW+ FP LE  +PNPM
Sbjct: 90  QVELYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPM 140

[Close]

BLAST of Sed0015767 vs. NCBI nr
Match: KGN50979.1 (hypothetical protein Csa_008880 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 7.3e-33
Identity = 68/131 (51.91%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 1   MTKQTNTVVTLMGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIKN 60
           M   T  ++ ++ +    +    LV  S   D+  S IW+ W+DEDR  TL PCL M+++
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  AKCQVELYKYYFNINKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPMMAYKN 120
            KCQVELY YYFNI+KK+LDL+CCV+V +MGK C  AF FWF FP LEALKPNPM  Y N
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CVRRLDAPPPS 132
           C +RL  P P+
Sbjct: 121 CFKRLTFPAPT 131

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BLAST of Sed0015767 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.1e-45
Identity = 83/120 (69.17%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 14  ILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIKNAKCQVELYKYYFN 73
           IL + I L+ LV  S   +DYNSPIW+GWVDEDRGYTLRPCLD +++AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  INKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPMMAYKNCVRRLDAPPPSKF 133
           I+KK+LDLNCCVFVK MGK C +AFTFW+ FP LE  +PNPM  Y NC+ RLDAPPP+ F
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

[Close]

BLAST of Sed0015767 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.2e-42
Identity = 86/135 (63.70%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MTKQTNTVVTLMGILSWTIILATLVPRSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMI 60
           M   TNTV  ++ IL   + LA LV  SMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KNAKCQVELYKYYFNINKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPMMAY 120
           K+AKCQV+LY YYFNI+KK+LDL CCVFVK MGK C  AF  W++FP LE  +PNPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 KNCVRRLDAPPPSKF 134
            NCV RL A PP+ F
Sbjct: 121 NNCVGRLQALPPTPF 135

[Close]

BLAST of Sed0015767 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.7e-41
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 1   MTKQTNTVVTLMGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIKN 60
           M  +TN +  ++ +LS  I LA LV  S   +DYNS IWN W+DEDR +TLRPCLD +++
Sbjct: 1   MANKTNAMRAMVILLS-AINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 61  AKCQVELYKYYFNINKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPMMAYKN 120
           AKCQVELY YYFNI+KK+LDLNCCVFVK MGK C +AFTFW+ FP LE  +PNPM  Y N
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 120

Query: 121 CVRRLDAPPPS 132
           C  RL APPP+
Sbjct: 121 CATRLSAPPPT 130

[Close]

BLAST of Sed0015767 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.5e-33
Identity = 68/131 (51.91%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 1   MTKQTNTVVTLMGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMIKN 60
           M   T  ++ ++ +    +    LV  S   D+  S IW+ W+DEDR  TL PCL M+++
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  AKCQVELYKYYFNINKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPMMAYKN 120
            KCQVELY YYFNI+KK+LDL+CCV+V +MGK C  AF FWF FP LEALKPNPM  Y N
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CVRRLDAPPPS 132
           C +RL  P P+
Sbjct: 121 CFKRLTFPAPT 131

[Close]

BLAST of Sed0015767 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-25
Identity = 58/133 (43.61%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 1   MTKQTNTVVTLMGILSWTIILA---TLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDM 60
           M K +N+   L+ ++  ++++     LV  S+  D+  S IW+GW+D+DR   L  CL +
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  IKNAKCQVELYKYYFNINKKKLDLNCCVFVKFMGKSCVEAFTFWFDFPDLEALKPNPMMA 120
           +K+ KCQVELY YYFN +KK++DL+CCV+V ++G+ C  +F  WF     +ALKPNPM  
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YKNCVRRLDAPPP 131
           Y NC +RL  P P
Sbjct: 121 YNNCFKRLTVPAP 133

The following BLAST results are available for this feature:

BLAST of Sed0015767 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046835.1	6.4e-45	69.17	hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004...	[more]
KAA0046841.1	8.6e-42	63.70	hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044...	[more]
KAG6578867.1	9.5e-41	68.03	hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8646662.1	1.5e-33	62.50	hypothetical protein Csa_004797, partial [Cucumis sativus]	[more]
KGN50979.1	7.3e-33	51.91	hypothetical protein Csa_008880 [Cucumis sativus]	[more]

BLAST of Sed0015767 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0015767 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C280	3.1e-45	69.17	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TZR1	4.2e-42	63.70	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KEB8	2.7e-41	61.83	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543...	[more]
A0A0A0KQ41	3.5e-33	51.91	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A0A0L535	1.6e-25	43.61	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]

BLAST of Sed0015767 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 54..105 e-value: 1.0E-5 score: 25.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015767.1	Sed0015767.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity