Sed0015714 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCATAGTCACGAATTCCATTCAAAAAATTGATATTTTTATTCTCATTTATTTGTGAGTAGTATTATACTTTACATAAGGTTTGCGATTCCTCCTCCCCTACTTTGAACGAAAAAAAACCCCGTAGATTAATGTTGAAAATTTGTTTGGTTCCTTATGGTGGCATTATTCAATGATTCAACTTTCTCAAAACCTTGGACTTCCCAGCACACAGCTTGTGGGCAGCACACAACTTGTTCATAATCCCTTCAAATCCCCAAATCCAAAACCCCCAAATTCACAGCCCAATCCATGGCGTCACAACCCAATCCCCCCCCAATTCCCCCAATTTCAGAAACCCTAATCCAAAACACAGACCAATCTCAATCTCCACCCACGCCCTTCCTCTTCAGCTTCTCCAACACAAACCCGACCCACCACCCACATCCGACCGACGACCGGATTTTTCTGATCAACCCATTCACCCAAAGCACGGTCGTGATCGAGGGCCGCTCCAGATTGGAAGCGCTTTTGCGCGATTACGGCGGCAGCCCAGGCCAGCCGCCGGCCTCCGCCGCTTCCATTCAATCGCTTCCGACCCTTCAACTCACGCAGCAGGATTTGCCCTGTGATTGTGTGATCTGTTTGGATGATTGCCAGATTGGGGCTCTGGCTAAGGAACTTCCCTGCAAACACAAATTTCATCTCGATTGTATACATAAATGGCTTCGGATTCATGGAAGCTGCCCTGTTTGTAGGTATGAACTTCCTGTTGATGCTGTCAAAAACGATGCTAGGAGGCTTAGGGACATTTGGGTGGGTTTTACTTTCAATAATGATCGGATTGTTGATGATTCTCACCATGAAGTTGAGGGTTAGAAATTGTAGATGTATAGAATAAAGCTTGGTTTTGTTCTTGGCGATCTGTACATTCTTTTGGTTACTATGTACGGTTTTTGTATCTGATGGGTGAACCTTGGAAGATGATGCTGTTTGTTTTCACGAAATTGTGCAGAATTTTGTTTAGTGGATTAATGGTAATCTGAGTAATTAAATACTCTATTGTGGATTGATATTAGAAGTGGTTGAAGTAATTAACTATACCCATTGAGAATTAGTTGTTGATAATAGATAATTAAGGATAACAATGAATTCTGGAAGGGGGTTGTTTACCACTAATTCTTCTAATCATTTCTTTGTGTTGGGTTTGATGAACATCTGCTCTGTTTTCGTAATGAGTTGAAACGAAAGTCAAAAGTGGTGAAATTTACACAATTTTTGTATGGTTTTAGAAAGGTTTTCCATTGCAGTTGAGGTGTTTACTCAGAGACACAACATATCTACTAGCTAATGTGTGTTTGATACGTATCCGACAAGTATTGGAGTGTAAGTCTAGACGTGTGTCGATCATGAACACACAAACCAAACTAAAGTGTTCACTCAGATTTTAGATGCTGAGATTCATTCACTATTTTGGATCCTAATTTCACTCTCATAGCC ATCATAGTCACGAATTCCATTCAAAAAATTGATATTTTTATTCTCATTTATTTGTGAGTAGTATTATACTTTACATAAGGTTTGCGATTCCTCCTCCCCTACTTTGAACGAAAAAAAACCCCGTAGATTAATGTTGAAAATTTGTTTGGTTCCTTATGGTGGCATTATTCAATGATTCAACTTTCTCAAAACCTTGGACTTCCCAGCACACAGCTTGTGGGCAGCACACAACTTGTTCATAATCCCTTCAAATCCCCAAATCCAAAACCCCCAAATTCACAGCCCAATCCATGGCGTCACAACCCAATCCCCCCCCAATTCCCCCAATTTCAGAAACCCTAATCCAAAACACAGACCAATCTCAATCTCCACCCACGCCCTTCCTCTTCAGCTTCTCCAACACAAACCCGACCCACCACCCACATCCGACCGACGACCGGATTTTTCTGATCAACCCATTCACCCAAAGCACGGTCGTGATCGAGGGCCGCTCCAGATTGGAAGCGCTTTTGCGCGATTACGGCGGCAGCCCAGGCCAGCCGCCGGCCTCCGCCGCTTCCATTCAATCGCTTCCGACCCTTCAACTCACGCAGCAGGATTTGCCCTGTGATTGTGTGATCTGTTTGGATGATTGCCAGATTGGGGCTCTGGCTAAGGAACTTCCCTGCAAACACAAATTTCATCTCGATTGTATACATAAATGGCTTCGGATTCATGGAAGCTGCCCTGTTTGTAGGTATGAACTTCCTGTTGATGCTGTCAAAAACGATGCTAGGAGGCTTAGGGACATTTGGGTGGGTTTTACTTTCAATAATGATCGGATTGTTGATGATTCTCACCATGAAGTTGAGGGTTAGAAATTGTAGATGTATAGAATAAAGCTTGGTTTTGTTCTTGGCGATCTGTACATTCTTTTGGTTACTATGTACGGTTTTTGTATCTGATGGGTGAACCTTGGAAGATGATGCTGTTTGTTTTCACGAAATTGTGCAGAATTTTGTTTAGTGGATTAATGGTAATCTGAGTAATTAAATACTCTATTGTGGATTGATATTAGAAGTGGTTGAAGTAATTAACTATACCCATTGAGAATTAGTTGTTGATAATAGATAATTAAGGATAACAATGAATTCTGGAAGGGGGTTGTTTACCACTAATTCTTCTAATCATTTCTTTGTGTTGGGTTTGATGAACATCTGCTCTGTTTTCGTAATGAGTTGAAACGAAAGTCAAAAGTGGTGAAATTTACACAATTTTTGTATGGTTTTAGAAAGGTTTTCCATTGCAGTTGAGGTGTTTACTCAGAGACACAACATATCTACTAGCTAATGTGTGTTTGATACGTATCCGACAAGTATTGGAGTGTAAGTCTAGACGTGTGTCGATCATGAACACACAAACCAAACTAAAGTGTTCACTCAGATTTTAGATGCTGAGATTCATTCACTATTTTGGATCCTAATTTCACTCTCATAGCC ATGGCGTCACAACCCAATCCCCCCCCAATTCCCCCAATTTCAGAAACCCTAATCCAAAACACAGACCAATCTCAATCTCCACCCACGCCCTTCCTCTTCAGCTTCTCCAACACAAACCCGACCCACCACCCACATCCGACCGACGACCGGATTTTTCTGATCAACCCATTCACCCAAAGCACGGTCGTGATCGAGGGCCGCTCCAGATTGGAAGCGCTTTTGCGCGATTACGGCGGCAGCCCAGGCCAGCCGCCGGCCTCCGCCGCTTCCATTCAATCGCTTCCGACCCTTCAACTCACGCAGCAGGATTTGCCCTGTGATTGTGTGATCTGTTTGGATGATTGCCAGATTGGGGCTCTGGCTAAGGAACTTCCCTGCAAACACAAATTTCATCTCGATTGTATACATAAATGGCTTCGGATTCATGGAAGCTGCCCTGTTTGTAGGTATGAACTTCCTGTTGATGCTGTCAAAAACGATGCTAGGAGGCTTAGGGACATTTGGGTGGGTTTTACTTTCAATAATGATCGGATTGTTGATGATTCTCACCATGAAGTTGAGGGTTAG MASQPNPPPIPPISETLIQNTDQSQSPPTPFLFSFSNTNPTHHPHPTDDRIFLINPFTQSTVVIEGRSRLEALLRDYGGSPGQPPASAASIQSLPTLQLTQQDLPCDCVICLDDCQIGALAKELPCKHKFHLDCIHKWLRIHGSCPVCRYELPVDAVKNDARRLRDIWVGFTFNNDRIVDDSHHEVEG Homology
BLAST of Sed0015714 vs. NCBI nr
Match: XP_023523370.1 (E3 ubiquitin-protein ligase RNF181-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 215.3 bits (547), Expect = 4.5e-52 Identity = 112/195 (57.44%), Postives = 137/195 (70.26%), Query Frame = 0
BLAST of Sed0015714 vs. NCBI nr
Match: XP_022997776.1 (E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima]) HSP 1 Score: 214.5 bits (545), Expect = 7.6e-52 Identity = 111/195 (56.92%), Postives = 136/195 (69.74%), Query Frame = 0
BLAST of Sed0015714 vs. NCBI nr
Match: XP_022949551.1 (E3 ubiquitin-protein ligase RNF181-like [Cucurbita moschata]) HSP 1 Score: 210.3 bits (534), Expect = 1.4e-50 Identity = 111/195 (56.92%), Postives = 135/195 (69.23%), Query Frame = 0
BLAST of Sed0015714 vs. NCBI nr
Match: KAG6607122.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036814.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 209.1 bits (531), Expect = 3.2e-50 Identity = 110/195 (56.41%), Postives = 134/195 (68.72%), Query Frame = 0
BLAST of Sed0015714 vs. NCBI nr
Match: XP_022972862.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita maxima]) HSP 1 Score: 191.0 bits (484), Expect = 9.0e-45 Identity = 86/136 (63.24%), Postives = 108/136 (79.41%), Query Frame = 0
BLAST of Sed0015714 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 2.9e-30 Identity = 69/160 (43.12%), Postives = 97/160 (60.62%), Query Frame = 0
BLAST of Sed0015714 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.0e-18 Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 0
BLAST of Sed0015714 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 4.4e-18 Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 0
BLAST of Sed0015714 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 6.3e-17 Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 0
BLAST of Sed0015714 vs. ExPASy Swiss-Prot
Match: Q8RXD3 (E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana OX=3702 GN=AIP2 PE=1 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.8e-16 Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 0
BLAST of Sed0015714 vs. ExPASy TrEMBL
Match: A0A6J1K8F1 (E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita maxima OX=3661 GN=LOC111492631 PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 3.7e-52 Identity = 111/195 (56.92%), Postives = 136/195 (69.74%), Query Frame = 0
BLAST of Sed0015714 vs. ExPASy TrEMBL
Match: A0A6J1GCB1 (E3 ubiquitin-protein ligase RNF181-like OS=Cucurbita moschata OX=3662 GN=LOC111452865 PE=4 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 7.0e-51 Identity = 111/195 (56.92%), Postives = 135/195 (69.23%), Query Frame = 0
BLAST of Sed0015714 vs. ExPASy TrEMBL
Match: A0A6J1I5Z1 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita maxima OX=3661 GN=LOC111471372 PE=4 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 4.4e-45 Identity = 86/136 (63.24%), Postives = 108/136 (79.41%), Query Frame = 0
BLAST of Sed0015714 vs. ExPASy TrEMBL
Match: A0A6J1DR69 (E3 ubiquitin-protein ligase RNF181 OS=Momordica charantia OX=3673 GN=LOC111023495 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 7.5e-45 Identity = 98/172 (56.98%), Postives = 119/172 (69.19%), Query Frame = 0
BLAST of Sed0015714 vs. ExPASy TrEMBL
Match: A0A6J1G4D3 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111450688 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44 Identity = 86/136 (63.24%), Postives = 107/136 (78.68%), Query Frame = 0
BLAST of Sed0015714 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein ) HSP 1 Score: 133.3 bits (334), Expect = 2.1e-31 Identity = 69/160 (43.12%), Postives = 97/160 (60.62%), Query Frame = 0
BLAST of Sed0015714 vs. TAIR 10
Match: AT5G56340.1 (RING/U-box superfamily protein ) HSP 1 Score: 105.1 bits (261), Expect = 6.1e-23 Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 0
BLAST of Sed0015714 vs. TAIR 10
Match: AT1G14200.1 (RING/U-box superfamily protein ) HSP 1 Score: 97.1 bits (240), Expect = 1.7e-20 Identity = 55/176 (31.25%), Postives = 91/176 (51.70%), Query Frame = 0
BLAST of Sed0015714 vs. TAIR 10
Match: AT4G26400.2 (RING/U-box superfamily protein ) HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19 Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 0
BLAST of Sed0015714 vs. TAIR 10
Match: AT4G26400.1 (RING/U-box superfamily protein ) HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19 Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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