
Sed0015712 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAACATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGGTATAGAGAACAAAATCAGGTATTGGAAAAACAATACGATGCAATAGATGAGTTGAAAGGATTTGCATGCAGCGGCTTTGGTTGGAATGATGAGCTGAAAAAGGAGTTTTTAGGAATTGGGTGAAGGTTAGTGTGATTTATACAAATTGACATGAATAATATGTAACTTTGATTAATGTTAATGCTAATTTTTGTAAATGATTGCAGACACACCCAACAGCGAAGAGTTTGAATAATAAACCATTCCCTTACTATGATGAAATGTCCATTATTTTGGAAAGGATCGTGCTACTGGAGAAGGGGAAGCAGATTTTGCTAATCTTGGATCAGGAAATAGAGCTTTTAACAAACGTGACTTTGACCTCATCCCACCTTCAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATGATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAAGTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGACAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAGTTGTTCCATAA ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAACATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATGATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAAGTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGACAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAGTTGTTCCATAA ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAACATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATGATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAAGTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGACAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAGTTGTTCCATAA MEGRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKEEFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMYMQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYLFDVEDCDKPGENGTISCQSTTVQVVTPPSHATVHQMSVLMLEQVVP Homology
BLAST of Sed0015712 vs. NCBI nr
Match: XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida]) HSP 1 Score: 75.9 bits (185), Expect = 4.2e-10 Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0
BLAST of Sed0015712 vs. NCBI nr
Match: TYK03073.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09 Identity = 51/156 (32.69%), Postives = 74/156 (47.44%), Query Frame = 0
BLAST of Sed0015712 vs. NCBI nr
Match: KAA0041796.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27085.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 73.6 bits (179), Expect = 2.1e-09 Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 0
BLAST of Sed0015712 vs. NCBI nr
Match: XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida]) HSP 1 Score: 72.8 bits (177), Expect = 3.5e-09 Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 0
BLAST of Sed0015712 vs. NCBI nr
Match: XP_026662506.2 (uncharacterized protein LOC113463064 [Phoenix dactylifera]) HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0
BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5D3BTT4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001790 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 5.9e-10 Identity = 51/156 (32.69%), Postives = 74/156 (47.44%), Query Frame = 0
BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5D3DUT7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00950 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09 Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 0
BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5A7TD34 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00040 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 2.5e-08 Identity = 49/152 (32.24%), Postives = 69/152 (45.39%), Query Frame = 0
BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5A7UQK4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00310 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08 Identity = 37/96 (38.54%), Postives = 47/96 (48.96%), Query Frame = 0
BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5A7SM12 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G001020 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08 Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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