Sed0015712 (gene) Chayote v1

Overview
NameSed0015712
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein
LocationLG11: 6492530 .. 6493468 (-)
RNA-Seq ExpressionSed0015712
SyntenySed0015712
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAACATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGGTATAGAGAACAAAATCAGGTATTGGAAAAACAATACGATGCAATAGATGAGTTGAAAGGATTTGCATGCAGCGGCTTTGGTTGGAATGATGAGCTGAAAAAGGAGTTTTTAGGAATTGGGTGAAGGTTAGTGTGATTTATACAAATTGACATGAATAATATGTAACTTTGATTAATGTTAATGCTAATTTTTGTAAATGATTGCAGACACACCCAACAGCGAAGAGTTTGAATAATAAACCATTCCCTTACTATGATGAAATGTCCATTATTTTGGAAAGGATCGTGCTACTGGAGAAGGGGAAGCAGATTTTGCTAATCTTGGATCAGGAAATAGAGCTTTTAACAAACGTGACTTTGACCTCATCCCACCTTCAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATGATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAAGTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGACAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAGTTGTTCCATAA

mRNA sequence

ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAACATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATGATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAAGTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGACAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAGTTGTTCCATAA

Coding sequence (CDS)

ATGGAAGGAAGAAATGAGAAACGCTCTTGGACTGCATTAGAGGATGCAAAGTTAATAGAAAGTTTAATGGCTTTGGTTCAAATTCTAGGCTGGAAAGGCGATAATGGAACATTCAGGCCTAGATATCTGAATAAACTTGAGAACTTCATGCAAGAAAGAATACCAGGTTGCACACTCGGTACGAAAGAGGAGTTTCAAGGAACTCCATCGAGTCATAATGATGGAGCTGCAAGTAGTGGATCTAGTAGAAAGCGAAAGAGAAGCACAACAGCTGCTGACTTGAATGATATAGTTGAAAATGCAATGTATATGCAACAGAGTCACGTGAAAGTGATTTCGGAATGGCCTAAGGAGCAATGGAGTGTTGAAAGTGACCTCTGTGAAAGATGTGTGGCGGAATTGGGCAAAATAACTTATCTATTTGATGTTGAAGATTGTGACAAACCAGGAGAAAATGGAACAATTTCTTGCCAATCCACAACAGTACAAGTTGTCACACCTCCGTCACATGCTACAGTACATCAAATGTCTGTCTTGATGTTAGAGCAAGTTGTTCCATAA

Protein sequence

MEGRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKEEFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMYMQQSHVKVISEWPKEQWSVESDLCERCVAELGKITYLFDVEDCDKPGENGTISCQSTTVQVVTPPSHATVHQMSVLMLEQVVP
Homology
BLAST of Sed0015712 vs. NCBI nr
Match: XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-10
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 3  GRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL 60
          G+  K  W+ +EDAKL+E+L+ LV+  GW+ DNGTFRP YL  LE  + E++PGCTL
Sbjct: 5  GKRSKHIWSKVEDAKLVEALLYLVE-TGWRSDNGTFRPGYLQHLERILHEKVPGCTL 60

BLAST of Sed0015712 vs. NCBI nr
Match: TYK03073.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 51/156 (32.69%), Postives = 74/156 (47.44%), Query Frame = 0

Query: 4   RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIP-GCTLGTK 63
           R  K +WT  E+A L+E L+ LV   GW+ DNGTF+P YLN+L   +  +IP G  + + 
Sbjct: 6   RLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPAGVWVESF 65

Query: 64  EEFQGTPSSH-----NDGAASS-------GSSRKRKRSTTAADLNDIVENAMYMQQSHVK 123
            +     S+       D A  +        S  KRKR   AAD  DI+  A+      + 
Sbjct: 66  ADVGSNDSARYEAFVTDAALDTNFQLMYVSSGSKRKRGGQAADSGDILRTAIEYGNEQLN 125

Query: 124 VISEWPKEQWSVESDLCERCVAELGKITYLFDVEDC 147
            I+EWP  Q    S + +  V +L  I  L  ++ C
Sbjct: 126 CIAEWPVLQHQDASQIRQEVVRQLEAIPELTLMDRC 161

BLAST of Sed0015712 vs. NCBI nr
Match: KAA0041796.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27085.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-09
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 0

Query: 4   RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKE 63
           R  K  WT  E+A L+E L+ LV    W+ +NGTFRP YL +LE  M  ++PG       
Sbjct: 6   REPKHVWTKEEEATLVECLVELVSAGRWRSNNGTFRPCYLAQLEQMMAAKLPG------R 65

Query: 64  EFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMYMQQSHVKVISEWPKEQWSVE 123
            FQ T         SSGS +KR      AD+ D++  AM      ++ I+EWP      E
Sbjct: 66  LFQAT--------ISSGSKQKR-GGLRVADV-DLIHEAMEYVNGQLRAIAEWPSVTLQNE 125

Query: 124 SDLCERCVAELGKITYL 141
           + +C+  + +L  I  L
Sbjct: 126 TAVCQEVLCQLRVILEL 126

BLAST of Sed0015712 vs. NCBI nr
Match: XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-09
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 3   GRNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL 60
           G+  K  W+ +EDAKL+E+L+ LV+  GW+ DNGTFRP YL  LE  + E++PGC L
Sbjct: 51  GKKSKHVWSKVEDAKLVEALLYLVE-TGWRFDNGTFRPGYLQHLEQILHEKVPGCAL 106

BLAST of Sed0015712 vs. NCBI nr
Match: XP_026662506.2 (uncharacterized protein LOC113463064 [Phoenix dactylifera])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 7   KRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL 60
           KR WT  EDAKL+E L+ +V   GWKGDNG FRP +   LE  M++++PGC L
Sbjct: 221 KRIWTKTEDAKLVECLIKVVNAGGWKGDNGIFRPGFHQHLERMMEKKLPGCRL 273

BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5D3BTT4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001790 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-10
Identity = 51/156 (32.69%), Postives = 74/156 (47.44%), Query Frame = 0

Query: 4   RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIP-GCTLGTK 63
           R  K +WT  E+A L+E L+ LV   GW+ DNGTF+P YLN+L   +  +IP G  + + 
Sbjct: 6   RLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPAGVWVESF 65

Query: 64  EEFQGTPSSH-----NDGAASS-------GSSRKRKRSTTAADLNDIVENAMYMQQSHVK 123
            +     S+       D A  +        S  KRKR   AAD  DI+  A+      + 
Sbjct: 66  ADVGSNDSARYEAFVTDAALDTNFQLMYVSSGSKRKRGGQAADSGDILRTAIEYGNEQLN 125

Query: 124 VISEWPKEQWSVESDLCERCVAELGKITYLFDVEDC 147
            I+EWP  Q    S + +  V +L  I  L  ++ C
Sbjct: 126 CIAEWPVLQHQDASQIRQEVVRQLEAIPELTLMDRC 161

BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5D3DUT7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00950 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 0

Query: 4   RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKE 63
           R  K  WT  E+A L+E L+ LV    W+ +NGTFRP YL +LE  M  ++PG       
Sbjct: 6   REPKHVWTKEEEATLVECLVELVSAGRWRSNNGTFRPCYLAQLEQMMAAKLPG------R 65

Query: 64  EFQGTPSSHNDGAASSGSSRKRKRSTTAADLNDIVENAMYMQQSHVKVISEWPKEQWSVE 123
            FQ T         SSGS +KR      AD+ D++  AM      ++ I+EWP      E
Sbjct: 66  LFQAT--------ISSGSKQKR-GGLRVADV-DLIHEAMEYVNGQLRAIAEWPSVTLQNE 125

Query: 124 SDLCERCVAELGKITYL 141
           + +C+  + +L  I  L
Sbjct: 126 TAVCQEVLCQLRVILEL 126

BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5A7TD34 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00040 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-08
Identity = 49/152 (32.24%), Postives = 69/152 (45.39%), Query Frame = 0

Query: 4   RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGTKE 63
           R  K +WT  E+A L+E L+ LV   GW+ DNGTF+  Y+N+L   +  +IP    G  E
Sbjct: 6   RLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFQLEYINQLARMITFKIPAG--GWVE 65

Query: 64  EFQGTPSSH--------NDGAASS-------GSSRKRKRSTTAADLNDIVENAMYMQQSH 123
            F    S+          D A  +        S  KRKR   AAD  D++  A+      
Sbjct: 66  SFADVGSNDPARYEAFVTDAALDTNFQLMYVSSRSKRKRGGQAADSGDVLRTAIEYGNEQ 125

Query: 124 VKVISEWPKEQWSVESDLCERCVAELGKITYL 141
           +  I+EWP  Q    S + +  V +L  I  L
Sbjct: 126 LNCIAEWPVLQHQDASQIRQEVVRQLEAIPEL 155

BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5A7UQK4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00310 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 37/96 (38.54%), Postives = 47/96 (48.96%), Query Frame = 0

Query: 10  WTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTLGT-------- 69
           WT  E+  L+E LM  V + GWK DNGTFRPRYL +L   M E++PGC +          
Sbjct: 12  WTKEEEGTLVECLMEFVSMGGWKSDNGTFRPRYLAQLVRMMAEKLPGCQVRATTVIDCRI 71

Query: 70  ---KEEFQGTPSSHNDGAASSGSSRKRKRSTTAADL 95
              K  FQ      + GA + G + KR     A  L
Sbjct: 72  KTLKRTFQAIAEIRSPGAVALGGTMKRNSHPAAKGL 107

BLAST of Sed0015712 vs. ExPASy TrEMBL
Match: A0A5A7SM12 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G001020 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 4  RNEKRSWTALEDAKLIESLMALVQILGWKGDNGTFRPRYLNKLENFMQERIPGCTL 60
          R  K +WT  E+A L+E L+ LV   GW+ DNGTFRP YLN+L   M  +IPGC +
Sbjct: 6  RLSKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPEYLNQLARMMAFKIPGCNI 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902479.14.2e-1054.39uncharacterized protein At2g29880-like [Benincasa hispida][more]
TYK03073.11.2e-0932.69retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041796.12.1e-0935.04retrotransposon protein [Cucumis melo var. makuwa] >TYK27085.1 retrotransposon p... [more]
XP_038892629.13.5e-0952.63uncharacterized protein At2g29880-like [Benincasa hispida][more]
XP_026662506.21.8e-0854.72uncharacterized protein LOC113463064 [Phoenix dactylifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BTT45.9e-1032.69Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DUT71.0e-0935.04Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TD342.5e-0832.24Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UQK43.2e-0838.54Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SM123.2e-0851.79Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..85
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 4..62
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 4..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015712.1Sed0015712.1mRNA