Sed0015696 (gene) Chayote v1

Overview


Name	Sed0015696
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Regulator of nonsense transcripts 1
Location	LG11: 34156687 .. 34164503 (+)
RNA-Seq Expression	Sed0015696
Synteny	Sed0015696

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCCTTTCCACAAACTTGAACCTTAAATGCCGCCTGTTCCTCTTCGTTTGCTACCTTTAGCTGTGCAGCAGCGATGAGAAAAATACAAAGCCCTCAAGAGAGGTACTCAGATGTTATTTGCTTGTCAAATTTTAGATTTCGCCAGGTTAGACCAATCTTGTCTGTTGTGTTGTTTACTGTCGTGAAATTGCAAGGAACTTAAAACTTAAAGATTATTGTTCCTGAATGTCTCATTCCTCTTGTTCTTGGAGCAAAGCAGGGGCATGTGGAGTTTTCATTCATTGCCAACTGGGACCTGTCATTATGTGCAGGGCTGCCCCAACCCCTTGGTGTAAAACAAATTAGGCTGCAGGTATTAGATTTTTGTTTTTGTTGTTTCTTAATAATTTAATTATGCTAAAGTTTCCATCTTAGATTGTTATGACTCACGATGGTCATCTGCAGACTGCAATCTAGCCATTAAAATGACCCTCAGTCAACTACCTTGGGCTCGACTTAGTAGAGATTAACGTATAAATGAAGGGAAGGGTATTGAGAATGAGTTGAAGTTATGGTTTGGTGGCCCGACGTGTTGTGTAGAAGGGTGGATGAGGATTTTTTTTAATTTTTAAATAGGTAACCAATCTTTCATTCACAAAATGAAGAGGAGAAAAATGGACACAATGAAAGAAAAAATCAGAAACAAAAACTACAAACCAAAACAATAAAAAGACAAAAAGGCCACATAAAAGTGCCAAACAGATTCCAAATACAAAACAAAACAGTTAAAATGGAGCTAAGTATCTATACATATATATATATATATATATACATATATATATATATATATATATATAAAGCCTCCCAATTTGAGCTTATCTGCCACAATGAGAATTCATCGAAAGCCTTTGAAAAGGAACCCCATAGATATACTTTGGTGCCTCTTGATTCCAAACAAGATAACCAAGGAAAGTTGGAATCCTGGAATATTCATTGATTTCTTTCCCACCAAAGCTCATGTAAGAGGCATTTAATGAAGTTAATCCAAAGGAAACGACCTTGCTTGCGATAAGGGCCTCCTAGAAGTAGCCCACATGATGCCTTACATTATTTGTGAAAACCCAAGAGATTCTGAACACGTTAAACAAACTTTGCCAACATTGCAAAGCATAATGACAAGAAAACCAGATGTGATTTCTATCTTTAACTTCTAACCAACAAAGAAAGCAAACTGAAGGTTGCAACATATAACTATGCATTTTTCTTTGAAGCACCTCTGCTGTATTCAACAATCATTCAACAGCTTGAATTTTTTACTCATCCCGCATACTAAGTAGACCACTGGCTTTTCCATTGAAACTTACTAAGTAAATGTGGTTGCTTTCTTTTCAAAATTCGAGGTGGCTTTCAGCTGAATTCCACTAATTTCGACAATTTTAGAAAACTTTCCTGGAATATCACTGTAGGTTTATGAGATTCTGCTGGGTAAGGCACTTAGATCCCCTGGAAATACTTCCTCAAAGTCATTTGAAATAAGAACTTCATCTTCGGCTATATTAGTTTCAATTGAACTTGCATTGAAATATGTTAATCGGGAGTGTCTTTGCCGGCCTTCAAAATATCATTTTCCTATGAAATTGGGTTCTCAAACGTCGCTGCAATGGAGGCTTCATTTAATGCTGGGAATTTTGATCGACAGAAAAAACAGGGGACCCCTCAATCAAGCTTGGAAGTTCAATGCGATTTGAAATTGAGGGGATTGAATTTTCACGCACAAGCCATGGGTTTCTATTGAAGTACACCTTATTAACTGGAATACTCTTCCAATCACTCAAAATACTGCCCAATGGTTTCAAATGATGAACGGGTCCAATGGTCCAGAGGTAAATTTTGTATTGCTAACCATCCTCCATATCCCTTGATGCTAGTTGGACGACGAGATAATGCCATAGTCGTCACTAAATGATTGTTGAAAGAAGCTAGTGATTGGTTGTCTTAGAAGAAGTGACAATGATGATTCCATCCAGAGAAAAAGAGGATGAGAAAGAGGAATGACTTTGTTAAACTTGTAGTCTTCTGACCATATAAAGGATTCTACCTTTCGAATGCTGAATGGGTTACCAAGGACACCACAACGAATCCATCCTTCAAAGAAGTTAATGGGGTGAGAAAAATCGAAGAAGATAATCGAAAGGCGGAGTGAAGAGAAGAAGAGGATAGAGGAAATGGAGATGAGGAGGCTTGATTAGGAGGAGGAAAGAAATTAAGGAATTCCGGCATAGTTATGATCAGGGAGTGTTTACTTTGAGCTCCTTTCATGAAGAAGGAAATTGTTGTCTCCAAAGGAGCCTTGTTGGTAGAGGCTTAGGGTCTCCTAGGTATACTCTCTTGGAAATCTCAGCTTTGATCTCCACGAGGGAGATTTATTGTAACATCCATTGTTGTCTCTTGGGTTTGGGCCTTGGGACTGGTGTGGGTGCCTCGGTATGTAGTCGGGTGGAGCTTTGATGGGGTAAGAAATAATATAACTTTTTAGAGGTGTGGAAAGATCCGTAGAGGATGTTAGAGCTCTCACTAAATTTTATGTTTTTCTTTGGGCTTCTGTCACTCATTGTTTTTGTAACTACCTTGATAGAACCCTGCCTCGGATATCTATCTTCTCCGTGAACGTCTTCCTGCACAAAACAATAAACACACACCAACGCAAGGAAATCTGGTATTGGATTGCTAGAAATTGGGGATTACAATCGGCCACCGTTCGAGAGGGTGGAGCTTTCCCGCCAAGTTTGTCTACGAACTCAGTCCCAAAAGTACAAATTCAAGATAAGATCCCCTTACAACATCAAAACACATTAAATACTCAAAATATTAAAATAAGATTACAGGACGCCTATCTGTCCTGGTCTTCCACGATTACGAGGTCGTTCCCAGATGGTCATTTCCCCTTTTGCCCCTCCTGGTGTAGACCCGCCAACTGGGTTGGGCCGTATCATACCCCGGAACTGGCAGCAATACCTTGTCCTCAAGGGGAAACAAAGGAAACTGCTGCTTGATGAAATCTATCGATTCCCACGTGGCTTCTTCCATACTCAATCCCCTCCATTCGATGAGTACCTCTGCTTCCCGCGTATCGTAATTCCATTGGTAAGCCACGGCTTGTTCCGGGTTCGCCTCCCATTCATAATCCTCGGTCAATACTGGGGGCCGCCCAATGAGTGCATGTTGTTCTCCGATCATTCCTTTGAGTTGCGATACGTGGAACACTGGGTGGATGTTGGACTCGGGTGGCAACTGCAGTCTGTAAGCTACCTTGCCAATCCTTTCCATGACCGGAAAGGGTCCATAAAACTTTGCGGCTAACTTCTGATTTCGGCGTTTTGCTATAGTCGACTGCCGATAGGGACGAAGTTTGAGGTACAACTAGGATCCGACGTCGTACCCTACGTCTCGTCGATCTTCATCCGCTCGTCTCTTCATCTTGTCCTAGGTAACAGTCAGTTGCTCCTTTATCTGCTCGATCATTTTATCTCTTTCCCATAATTGCTCGTCCAACGTGGCATTTGTCGTTTGTTGATCTCCATAGAGTAGAGGGGGGGTGGGGGTCGACCGTACACAATCTGGAAGGGGGTCATGCGCGATGAAGAATGGTAGGTTGTATTATACCAGTACTTGGCCCAGTGGATCCAGTGACTCCAAGTTCGGGGGTTTTCACTGCAAAAACAACGTAAATACGTCTCCAAACACCTGTTGACTACTTCCGTCTGCCCATTCGACTGAGGGTGGTAGGCGGTGCTTCGATGCAGTCCGGTTCCCTGTAATCTGAACAACTCTGACCAAAAGTGACTAAGGAATATTTTATCACGGTCCGATACTATCGACCTGGGGAACTCGTGAAACCTTACCACCTCTTGTATGACCACCGAGGCTACCGTCTTGGATGAGAACGGATGGCTTAACGGCACGAAGTGTGCTGCCTTGCTGAGGCGGTCCACTACCACTATGATTGTTTCCTTTCTGTCCGACTTGGGTAACCCCTCGATGAAGTCCATCGACAAATCTTCCCATATCCTCTTCGGGACTGGTAGTGGTTGCATTAACCCGACAGGTTTCAGCGTGGAATGTTTGTTCCTTTGACACACTTGACACTGCTCCACGTTCCTCAGCACATCGCTCCGCATCCCTACCCAGTAGAACTCGGCCGCAATCCTTTTATACATTCTTAGGAATCTGGAGTGGCCCCCCAAAACGGAGTTGTGGTATGCGTGTAGAAGTGCCTCGCGGATTTGCGGTGATACCGGTATCGCCAGTCGATTTTTGTACAAAAGGTTTCCTTGCACCAGTGTGTATGGTGGTCTTGAGTTTTCGTCTCTTTCCAGGTCGTGCCTCACCGTCTTCAAGTGGGGATCGTCTATGATGTCAGTCCGAACTCGCTCCAAGTCGATCACCGGGGGTCCTTCTAAGTGCGCTAGGTGGACCACTTCAGGAGTGCGGGACAGGGCATCTGCTGCCTTGTTTTCCAGTCCTGGGCGGTATTGGATCTCGAAATCGTAGCCCAGCAACTTATACAACCATTTCTGGTATTGCAGAAGGACCTCCCTCTGTTCTACCAAATGCCTGAGGGACTGCTGGTCAGATCGGACCACAAACCTTCGTCCTAACAGATAGGTTCTCCACTTTTGGATGGCCATCACCACTGCCATTAACACGCGTTCGTAAACCGACGTCGCGCTAGCTCTAGGCGATAGGTTGTGGCTGAAATATGCGATCGGTCTTTTGTTCTGCGATAGAACTGCCCCTAATCCCATTCCTGACGCGTTCGTTTCGACAATGAACGTTTCTGAGAAATCCAGCATGGCCAGGACCGGTAGCGTCGACATAGCGTTCTTCAATTCATCAAACTCTCGTTGCGTGCTCACTGTCCATTCGAACGCATCCCTACGCGTTAACGCATGCAGAGGAGCAACGATGGATCCATAATTCGAGACGAACTTCCTATAGTAACCTGTTAGCCCCAAAAATCCTCTGATCTCTCGCACATTCTTGGGCTTCGGCTACTCTATCATTGCCCTCACCTTCTCTGGGTCCGCTTCTACTCCGTTCAGGGATATCCAATGCCTGAGATACTCTATTTTCTCTTGTCCGAACGTGCATTTATTCGAATTCGCAACCAGCCGATTGTGTCTCAACACTCCAAAGACCATCCGTAGGTGCTCCACATGCAATTCCCAATTAGGGTTGTATACTAAGATGTCATCAAAGAATACTAACACGAATTTCCTAAAAAACGATCTAAATACTTGGTTCATCAGGGCTTGGAAAGTGGCCGGGGCACTGGTTAACCCGAACGGCATCACCATGAACTCATAGTGTCCCTCGTGCATCTGAAACGCGGTCTTGGGTACGTCTTCCTCTCTCATCCTGATTTGGTGGTACCCGGATTTGAGATCAATCTTTGAAAAGTATTTCGCCCCTTGGAGCTCGTCCAACAACTCGTCTATTATCGGTATGGGAAATTTGTCAGGAACCGTGATGTTATTTAGATTGCGGTAGTCGACGCAGAATCTCCAGCTTCCATCTTTCTTCTTGACTAACAGTACTGGGTTGGAGAAAGGGCTCCGACTGGGTCTTATGAGCCCCGCGGTCATCATTTCTCTTACTAACCTCTCGATCTCGTTCTTCTGCGTGAATGAATATCGGCAAGGTCTTATGTTGACTGGTCCCGCTCCATCCTTCAGTCTAATGACATGGTCGATTTCTCTTGTCGGAGGCAAACTCTGAGTTGTCATAAATACGTCACTATAATCTGCCAGCGCCTCGGCCAGGTCGGATGGGCCTTCTTCTATCTCTGCTAGGAAGTCGAAATTGTCTGACACTTCGGCCTCAATGACCCGCAACTCAACCAAGTACCCTTCATCGTGCTTCTGCCAAGATTTACTCAAGTTTTTTAGCGATACCTCGGCCCTCGTCAGCGATGGGTCGCCCTGTAATACTATCTTATCATCCCCTGACCCTATCGTCATTCTTAACGATGTCCAGTCCACCTCTGTCTTTCCTAGCGTTTTGAGCCACTGCATGCCCAGGATGGCGTCGATGCTACCCAACTCGAGGGGAAGGAAATCCTGCCGAAATGCCAATCCTGCCATTTTGATTGGAACGTCTTTGCATATGCCCTTCCCGCGTTTGGCCTCCCCGGTCCCTAGTATGACTCCGAAGTGGCGAGAACTGGTCGTCGGAATCTTGGCTTTGTCGACGAACCCCGTGGATATGAAATTGTGGGTAGCGCCACAATCTATCAACAAGATCGCTTCATGTCCGCCTATCTCTCCTTTCAACTTGATGGTTCCCGGCAACGAAAACCCCACTACCGTGTTCAACGAAAATTTCGCCGTCATCTCTATCTCCTCGTCTTTTTCCCTTTCTGGTCCTTTGTCTCCACTGTCTTGCATGTACTCGTTGGCTACCTCGTCACTCACAAGCAGCAATTTCAACTCCTTGGTCTTGCATTTATGGCCCACGAAATTTTTTTCGTCACACCTATAACATAATCCTTTCTCTCTCCAACTTTGCAGTTCAGAGTCGGTCAATCTTTTGAAGTTCGGATCCCGAGCGACGGGGTAGGTGATCTGGGCCGGTTGAGGGGGTCGGGTTTGAGTTGCTAATCCTTTTTCTATTTTATTGTAGGTGCAATATTGTATGCTCCCATCACTTTCTGAATTTCCTTCTAATAGCTTCTATGAGGGAACACTACAAAATGGAGTTACCATCAACCAAAGGCTATCAACAGGCATTGACTTCCCATGGCCATTTCCCAACCGTCCAATGTTCTTTTATGTCCAGGTGTTAATTGATTCAGTCAGTTTCAGTCCAGAGAGCAGAATAAAGAAAAATGAGAGGGATCTATCTTGAGGGCG

mRNA sequence

AAAACCCTTTCCACAAACTTGAACCTTAAATGCCGCCTGTTCCTCTTCGTTTGCTACCTTTAGCTGTGCAGCAGCGATGAGAAAAATACAAAGCCCTCAAGAGAGGTACTCAGATGTTATTTGCTTGTCAAATTTTAGATTTCGCCAGGGGCATGTGGAGTTTTCATTCATTGCCAACTGGGACCTGTCATTATGTGCAGGGCTGCCCCAACCCCTTGGTGTAAAACAAATTAGGCTGCAGGTGCAATATTGTATGCTCCCATCACTTTCTGAATTTCCTTCTAATAGCTTCTATGAGGGAACACTACAAAATGGAGTTACCATCAACCAAAGGCTATCAACAGGCATTGACTTCCCATGGCCATTTCCCAACCGTCCAATGTTCTTTTATGTCCAGGTGTTAATTGATTCAGTCAGTTTCAGTCCAGAGAGCAGAATAAAGAAAAATGAGAGGGATCTATCTTGAGGGCG

Coding sequence (CDS)

ATGAGAAAAATACAAAGCCCTCAAGAGAGGTACTCAGATGTTATTTGCTTGTCAAATTTTAGATTTCGCCAGGGGCATGTGGAGTTTTCATTCATTGCCAACTGGGACCTGTCATTATGTGCAGGGCTGCCCCAACCCCTTGGTGTAAAACAAATTAGGCTGCAGGTGCAATATTGTATGCTCCCATCACTTTCTGAATTTCCTTCTAATAGCTTCTATGAGGGAACACTACAAAATGGAGTTACCATCAACCAAAGGCTATCAACAGGCATTGACTTCCCATGGCCATTTCCCAACCGTCCAATGTTCTTTTATGTCCAGGTGTTAATTGATTCAGTCAGTTTCAGTCCAGAGAGCAGAATAAAGAAAAATGAGAGGGATCTATCTTGA

Protein sequence

MRKIQSPQERYSDVICLSNFRFRQGHVEFSFIANWDLSLCAGLPQPLGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNERDLS

Homology

[Close]

BLAST of Sed0015696 vs. NCBI nr
Match: KZN04760.1 (hypothetical protein DCAR_005597 [Daucus carota subsp. sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-27
Identity = 75/136 (55.15%), Postives = 86/136 (63.24%), Query Frame = 0


Query: 12  SDVIC----------LSNFRFRQ-----GHVEFSFIANWDLSLCAGLPQP-------LGV 71
           +DVIC          L+NFRFRQ      H +   +     +  AGL Q        LGV
Sbjct: 609 ADVICCTCVGAGDPRLANFRFRQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGV 668

Query: 72  KQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVL 126
           K IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+R STGIDFPWP PNRPMFFYVQ+ 
Sbjct: 669 KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMG 728

[Close]

BLAST of Sed0015696 vs. NCBI nr
Match: KAG2283167.1 (hypothetical protein Bca52824_054387 [Brassica carinata])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 73/154 (47.40%), Postives = 87/154 (56.49%), Query Frame = 0


Query: 12  SDVIC----------LSNFRFRQ-----------------------GHVEFSFIANWDLS 71
           +DVIC          LSNFRFRQ                        H +   +     +
Sbjct: 473 ADVICSTCVGAADLRLSNFRFRQVLIDESTQSTEPECLIPLVVLVGDHCQLGPVIMCKKA 532

Query: 72  LCAGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGI 126
             AGL Q        LG+K IRLQVQY M P+LSEFPSNSFYEGTLQNGVT+N+RL+TGI
Sbjct: 533 ARAGLAQSLFERLVLLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTVNERLTTGI 592

[Close]

BLAST of Sed0015696 vs. NCBI nr
Match: CAA3023019.1 (regulator of nonsense transcripts 1 homolog [Olea europaea subsp. europaea])

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-25
Identity = 73/149 (48.99%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 12  SDVIC----------LSNFRFRQ------------------GHVEFSFIANWDLSLCAGL 71
           +DVIC          L+NFRFRQ                   H +   +     +  AGL
Sbjct: 628 ADVICCTCVGSGDPRLANFRFRQPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGL 687

Query: 72  PQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWP 126
            Q        LGVK IRLQVQY M P+LSEFPSNSFYEGTLQNGVTIN+R S GIDFPWP
Sbjct: 688 AQSLFERLVLLGVKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSPGIDFPWP 747

[Close]

BLAST of Sed0015696 vs. NCBI nr
Match: CAA3023020.1 (regulator of nonsense transcripts 1 homolog [Olea europaea subsp. europaea])

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-25
Identity = 73/149 (48.99%), Postives = 85/149 (57.05%), Query Frame = 0


Query: 12  SDVIC----------LSNFRFRQ------------------GHVEFSFIANWDLSLCAGL 71
           +DVIC          L+NFRFRQ                   H +   +     +  AGL
Sbjct: 390 ADVICCTCVGSGDPRLANFRFRQPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGL 449

Query: 72  PQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWP 126
            Q        LGVK IRLQVQY M P+LSEFPSNSFYEGTLQNGVTIN+R S GIDFPWP
Sbjct: 450 AQSLFERLVLLGVKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSPGIDFPWP 509

[Close]

BLAST of Sed0015696 vs. NCBI nr
Match: GAV89382.1 (UPF1_Zn_bind domain-containing protein/AAA_11 domain-containing protein/AAA_12 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 124.4 bits (311), Expect = 7.1e-25
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 47  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYV 106
           LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+RLS+GIDFPWP PNRPMFFYV
Sbjct: 708 LGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERLSSGIDFPWPVPNRPMFFYV 767

Query: 107 QVLIDSVSFSPESRIKKNE 126
           Q+  + +S S  S + + E
Sbjct: 768 QMGQEEISASGTSYLNRTE 786

[Close]

BLAST of Sed0015696 vs. ExPASy Swiss-Prot
Match: Q9FJR0 (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana OX=3702 GN=UPF1 PE=1 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-25
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 47  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYV 106
           LG+K IRLQVQY M P+LSEFPSNSFYEGTLQNGVTI +R +TGIDFPWP PNRPMFFYV
Sbjct: 711 LGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYV 770

Query: 107 QVLIDSVSFSPESRIKKNE 126
           Q+  + +S S  S + + E
Sbjct: 771 QLGQEEISASGTSYLNRTE 789

[Close]

BLAST of Sed0015696 vs. ExPASy Swiss-Prot
Match: Q98TR3 (Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes OX=31033 GN=rent1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.4e-20
Identity = 50/105 (47.62%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 33  ANWDLSLC-----AGLPQP-------LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNG 92
           A+W   +C     AGL Q        LG++ IRLQVQY M P+LS FPSN FYEG+LQNG
Sbjct: 646 ASWSCVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNG 705

Query: 93  VTINQRLSTGIDFPWPFPNRPMFFYVQVLIDSVSFSPESRIKKNE 126
           VT   R+  G DF WP P +PMFFYV    + ++ S  S + + E
Sbjct: 706 VTAGDRIKKGFDFQWPQPEKPMFFYVTQGQEEIASSGTSYLNRTE 750

[Close]

BLAST of Sed0015696 vs. ExPASy Swiss-Prot
Match: Q92900 (Regulator of nonsense transcripts 1 OS=Homo sapiens OX=9606 GN=UPF1 PE=1 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-18
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 47  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYV 106
           LG++ IRLQVQY M P+LS FPSN FYEG+LQNGVT   R+  G DF WP P++PMFFYV
Sbjct: 702 LGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYV 761

Query: 107 QVLIDSVSFSPESRIKKNE 126
               + ++ S  S + + E
Sbjct: 762 TQGQEEIASSGTSYLNRTE 780

[Close]

BLAST of Sed0015696 vs. ExPASy Swiss-Prot
Match: Q9EPU0 (Regulator of nonsense transcripts 1 OS=Mus musculus OX=10090 GN=Upf1 PE=1 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-18
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 47  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYV 106
           LG++ IRLQVQY M P+LS FPSN FYEG+LQNGVT   R+  G DF WP P++PMFFYV
Sbjct: 697 LGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYV 756

Query: 107 QVLIDSVSFSPESRIKKNE 126
               + ++ S  S + + E
Sbjct: 757 TQGQEEIASSGTSYLNRTE 775

[Close]

BLAST of Sed0015696 vs. ExPASy Swiss-Prot
Match: O76512 (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans OX=6239 GN=smg-2 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.7e-17
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 47  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYV 106
           LG++  RLQVQY M P LSEFPSN FY+G+LQNGVT N R  TG+D+ WP PN+P FF+ 
Sbjct: 665 LGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKPAFFWH 724

Query: 107 QVLIDSVSFSPESRIKKNE 126
               + +S S  S + + E
Sbjct: 725 CSGSEELSASGTSFLNRTE 743

[Close]

BLAST of Sed0015696 vs. ExPASy TrEMBL
Match: A0A166D5Q4 (Helicase ATP-binding domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005597 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.4e-28
Identity = 75/136 (55.15%), Postives = 86/136 (63.24%), Query Frame = 0


Query: 12  SDVIC----------LSNFRFRQ-----GHVEFSFIANWDLSLCAGLPQP-------LGV 71
           +DVIC          L+NFRFRQ      H +   +     +  AGL Q        LGV
Sbjct: 609 ADVICCTCVGAGDPRLANFRFRQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGV 668

Query: 72  KQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYVQVL 126
           K IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+R STGIDFPWP PNRPMFFYVQ+ 
Sbjct: 669 KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMG 728

[Close]

BLAST of Sed0015696 vs. ExPASy TrEMBL
Match: A0A7J7C6B0 (Regulator of nonsense transcripts 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW20G00033 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 47  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYV 106
           LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+RLS+GIDFPWP PNRPMFFYV
Sbjct: 755 LGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERLSSGIDFPWPVPNRPMFFYV 814

Query: 107 QVLIDSVSFSPESRIKKNE 126
           Q+  + +S S  S + + E
Sbjct: 815 QMGQEEISASGTSYLNRTE 833

[Close]

BLAST of Sed0015696 vs. ExPASy TrEMBL
Match: A0A1Q3DAA5 (UPF1_Zn_bind domain-containing protein/AAA_11 domain-containing protein/AAA_12 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32799 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 47  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYV 106
           LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+RLS+GIDFPWP PNRPMFFYV
Sbjct: 708 LGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERLSSGIDFPWPVPNRPMFFYV 767

Query: 107 QVLIDSVSFSPESRIKKNE 126
           Q+  + +S S  S + + E
Sbjct: 768 QMGQEEISASGTSYLNRTE 786

[Close]

BLAST of Sed0015696 vs. ExPASy TrEMBL
Match: A0A7J7CLY5 (Regulator of nonsense transcripts 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW15G00597 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.5e-25
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 47  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYV 106
           LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+RLS+GIDFPWP PNRPMFFYV
Sbjct: 688 LGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERLSSGIDFPWPVPNRPMFFYV 747

Query: 107 QVLIDSVSFSPESRIKKNE 126
           Q+  + +S S  S + + E
Sbjct: 748 QMGQEEISGSGTSYLNRTE 766

[Close]

BLAST of Sed0015696 vs. ExPASy TrEMBL
Match: A0A6J1E6Q5 (regulator of nonsense transcripts 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431113 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 47  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYV 106
           LGVK IRLQVQY M PSLSEFPSNSFYEGTLQNGVTIN+R STGIDFPWP PNRPMFFYV
Sbjct: 705 LGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYV 764

Query: 107 QVLIDSVSFSPESRIKKNE 126
           Q+  + +S S  S + + E
Sbjct: 765 QMGQEEISASGTSYLNRTE 783

[Close]

BLAST of Sed0015696 vs. TAIR 10
Match: AT5G47010.1 (RNA helicase, putative )

HSP 1 Score: 117.5 bits (293), Expect = 8.1e-27
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 47  LGVKQIRLQVQYCMLPSLSEFPSNSFYEGTLQNGVTINQRLSTGIDFPWPFPNRPMFFYV 106
           LG+K IRLQVQY M P+LSEFPSNSFYEGTLQNGVTI +R +TGIDFPWP PNRPMFFYV
Sbjct: 711 LGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYV 770

Query: 107 QVLIDSVSFSPESRIKKNE 126
           Q+  + +S S  S + + E
Sbjct: 771 QLGQEEISASGTSYLNRTE 789

The following BLAST results are available for this feature:

BLAST of Sed0015696 vs. NCBI nr


Match Name	E-value	Identity	Description
KZN04760.1	1.5e-27	55.15	hypothetical protein DCAR_005597 [Daucus carota subsp. sativus]	[more]
KAG2283167.1	1.4e-25	47.40	hypothetical protein Bca52824_054387 [Brassica carinata]	[more]
CAA3023019.1	5.5e-25	48.99	regulator of nonsense transcripts 1 homolog [Olea europaea subsp. europaea]	[more]
CAA3023020.1	5.5e-25	48.99	regulator of nonsense transcripts 1 homolog [Olea europaea subsp. europaea]	[more]
GAV89382.1	7.1e-25	74.68	UPF1_Zn_bind domain-containing protein/AAA_11 domain-containing protein/AAA_12 d...	[more]

BLAST of Sed0015696 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJR0	1.1e-25	69.62	Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana OX=3702 GN=U...	[more]
Q98TR3	9.4e-20	47.62	Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes OX=31033 GN=re...	[more]
Q92900	2.3e-18	54.43	Regulator of nonsense transcripts 1 OS=Homo sapiens OX=9606 GN=UPF1 PE=1 SV=2	[more]
Q9EPU0	2.3e-18	54.43	Regulator of nonsense transcripts 1 OS=Mus musculus OX=10090 GN=Upf1 PE=1 SV=2	[more]
O76512	9.7e-17	53.16	Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans OX=6239 GN=smg-2 P...	[more]

BLAST of Sed0015696 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A166D5Q4	7.4e-28	55.15	Helicase ATP-binding domain-containing protein OS=Daucus carota subsp. sativus O...	[more]
A0A7J7C6B0	3.4e-25	74.68	Regulator of nonsense transcripts 1 OS=Tripterygium wilfordii OX=458696 GN=HS088...	[more]
A0A1Q3DAA5	3.4e-25	74.68	UPF1_Zn_bind domain-containing protein/AAA_11 domain-containing protein/AAA_12 d...	[more]
A0A7J7CLY5	4.5e-25	74.68	Regulator of nonsense transcripts 1 OS=Tripterygium wilfordii OX=458696 GN=HS088...	[more]
A0A6J1E6Q5	5.9e-25	74.68	regulator of nonsense transcripts 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Sed0015696 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47010.1	8.1e-27	69.62	RNA helicase, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 58..108 e-value: 3.7E-8 score: 34.9
IPR041679	DNA2/NAM7 helicase-like, C-terminal	PFAM	PF13087	AAA_12	coord: 50..104 e-value: 4.6E-7 score: 29.7
None	No IPR available	PANTHER	PTHR10887:SF486	REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN	coord: 47..108
IPR045055	DNA2/NAM7-like helicase	PANTHER	PTHR10887	DNA2/NAM7 HELICASE FAMILY	coord: 47..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015696.1	Sed0015696.1	mRNA
Sed0015696.2	Sed0015696.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0048571	long-day photoperiodism
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0009611	response to wounding
biological_process	GO:0008380	RNA splicing
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0006412	translation
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
cellular_component	GO:0000932	P-body
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0008270	zinc ion binding