Sed0015693 (gene) Chayote v1

Overview
NameSed0015693
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTransmembrane protein
LocationLG13: 21169818 .. 21170108 (+)
RNA-Seq ExpressionSed0015693
SyntenySed0015693
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGCAGTGACACTTACCTCGGTTGTTCGCTCTTTATTCGTCGGCATAATACTGCTTGCTATAATAACAGCTATATTCGAAACAGCTGCAGCATCACGTTTACTACCACCATTACGAGCTGCACCTTCAACAACTCCTCATGGCGGCATCCATGAATCTCAGGAGAAGGAAGATCACAATCGCTTCAAGGTTCAGTCAGAAATCGAGGCTGACTATGGCTACTGGAATCCGAACCCCGTGTTTGGGGGAGGATATGCAGGCCCCGTTCCCCATGAGGTCGAAGAATGA

mRNA sequence

ATGGGGGCAGTGACACTTACCTCGGTTGTTCGCTCTTTATTCGTCGGCATAATACTGCTTGCTATAATAACAGCTATATTCGAAACAGCTGCAGCATCACGTTTACTACCACCATTACGAGCTGCACCTTCAACAACTCCTCATGGCGGCATCCATGAATCTCAGGAGAAGGAAGATCACAATCGCTTCAAGGTTCAGTCAGAAATCGAGGCTGACTATGGCTACTGGAATCCGAACCCCGTGTTTGGGGGAGGATATGCAGGCCCCGTTCCCCATGAGGTCGAAGAATGA

Coding sequence (CDS)

ATGGGGGCAGTGACACTTACCTCGGTTGTTCGCTCTTTATTCGTCGGCATAATACTGCTTGCTATAATAACAGCTATATTCGAAACAGCTGCAGCATCACGTTTACTACCACCATTACGAGCTGCACCTTCAACAACTCCTCATGGCGGCATCCATGAATCTCAGGAGAAGGAAGATCACAATCGCTTCAAGGTTCAGTCAGAAATCGAGGCTGACTATGGCTACTGGAATCCGAACCCCGTGTTTGGGGGAGGATATGCAGGCCCCGTTCCCCATGAGGTCGAAGAATGA

Protein sequence

MGAVTLTSVVRSLFVGIILLAIITAIFETAAASRLLPPLRAAPSTTPHGGIHESQEKEDHNRFKVQSEIEADYGYWNPNPVFGGGYAGPVPHEVEE
Homology
BLAST of Sed0015693 vs. NCBI nr
Match: KAG6608573.1 (hypothetical protein SDJN03_01915, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 6.3e-26
Identity = 66/95 (69.47%), Postives = 75/95 (78.95%), Query Frame = 0

Query: 1  MGAVTLTSVVRSLFVGIILLAIITAIFETAAASRLLPPLRAAPSTTPHGGIHESQEKEDH 60
          M  VTL S + SLF G++   IITA+ +TAA SRLL PL AAPSTTPH GIHES+ K DH
Sbjct: 1  MAGVTLASFLYSLFFGVMTFTIITALSKTAAGSRLLSPLSAAPSTTPH-GIHESEVKGDH 60

Query: 61 NRFKVQSEIEADYGYWNPNPVFGGGYAGPVPHEVE 96
          +RFKV SEI ADYGYWNP PVFGGGYA P+PHEV+
Sbjct: 61 SRFKVLSEIVADYGYWNPTPVFGGGYADPIPHEVQ 94

BLAST of Sed0015693 vs. NCBI nr
Match: PON91008.1 (Transmembrane protein [Trema orientale])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 0

Query: 5  TLTSVVRSLFVGIILLAIITAIFETAAASR--LLPPLRA-APSTTPHGGIHE--SQEKED 64
          T +SV  +L V I+++ I+T +  TAAA +  LLP   A +PS+     I +   +++E+
Sbjct: 4  TASSVEHALCV-IVVIIIMTLLSTTAAAPKPSLLPVKHAPSPSSVSLQPIEKPLQRDEEE 63

Query: 65 HNRFKVQSEIEADYGYWNPNPVFGGGYAGPVPHE--VEE 97
          HN F    E   DYG+WNP P FGGG+A P+PH   VEE
Sbjct: 64 HNHF--PPEFIQDYGFWNPTPYFGGGHAAPIPHSHAVEE 99

BLAST of Sed0015693 vs. ExPASy TrEMBL
Match: A0A2P5EZP1 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_132260 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 0

Query: 5  TLTSVVRSLFVGIILLAIITAIFETAAASR--LLPPLRA-APSTTPHGGIHE--SQEKED 64
          T +SV  +L V I+++ I+T +  TAAA +  LLP   A +PS+     I +   +++E+
Sbjct: 4  TASSVEHALCV-IVVIIIMTLLSTTAAAPKPSLLPVKHAPSPSSVSLQPIEKPLQRDEEE 63

Query: 65 HNRFKVQSEIEADYGYWNPNPVFGGGYAGPVPHE--VEE 97
          HN F    E   DYG+WNP P FGGG+A P+PH   VEE
Sbjct: 64 HNHF--PPEFIQDYGFWNPTPYFGGGHAAPIPHSHAVEE 99

BLAST of Sed0015693 vs. TAIR 10
Match: AT1G28375.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-05
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 0

Query: 63 FKVQS-----EIEADYGYWNPNPVFGGG--YAGPVPH 93
          F+V+S     ++  DYG+WNP+PV+GGG  Y GPVPH
Sbjct: 53 FRVKSKSFLPKLYGDYGFWNPSPVYGGGFPYPGPVPH 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6608573.16.3e-2669.47hypothetical protein SDJN03_01915, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON91008.12.3e-0442.42Transmembrane protein [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5EZP11.1e-0442.42Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_132260 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G28375.12.9e-0554.05unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015693.1Sed0015693.1mRNA