Sed0015680 (gene) Chayote v1

Overview


Name	Sed0015680
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SANT domain-containing protein
Location	LG10: 29095490 .. 29097910 (-)
RNA-Seq Expression	Sed0015680
Synteny	Sed0015680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTCTAGTTCTTCATCATCATCATCTTCAAGCTGCTCGAGCGCGTGGAGTTCAAAGCAAAACAAGCTGTTCGAAAATGCGTTGACGGTGTACGACAAAGAGTCGCCGGACAGGTGGCAGAAGATGGCGAGAGTCGTCGGATCGGGGAAGACGGCGGAGGAAGTGAAAAGGCACTACGAGATCCTGGTTGAGGACGTCCATAATATTGAGACCGGCAAAGTTCCTTTGCCCAATTACTCTAAACATTACTCCAACTTTATTCACGAAGAACAAAGGTCATTTATTCCCTCTTTCTCTTTCTCTAACCAATGTTTAGGGATCCAAACATACCGCCCGATCGTCAAGAATACATATCGATTACCGTTATACTAAGCTCGCTTTGGGAATAACCTCAAGTATCTGAATATTTAGAATCGGATGGGTATTCATGTTTTTATATTTCTCATATATATTTAAGAATAAGTATAATGTAAAATACCTAAAACGTTTTGTTTCAATGAAAAGATTATACGTCAATTAGTTAATTATTTTAGGGATTTTTATTTATTGATTAATGCTAATTGTGGATGCTGTCTCTTGGGTTATTTGTAGACTAAAGGGTCTAAAGCTACAGTGATTGCAACAATAAACCCAGATTGAAGTAAAAATAAAAGCTACTGCAGAGCTCCAAACTGAAAGACAGTTGCAGAAATATATCTAAGAAGAAATTCTACCTGTGAATTATAGTTTACTCCCAACATAAAATGTAATATGTGTTTTGATTGATTATTTGCTTTCTGTCCTATGTATCTAATCAATCTCATGCTTGATATGCAACATATAAGTAATACATAAAATGGATTGCCTTTGGCTCTCTACACCATGTTCATATATATATAAAGTGTACATGAGAAATTTAAGCATATAGTAAATGGTATTCGTTGTGATAAAATGTATATGAAATTTTAGTCGTTGATTATTGATGCAAAACGTTTTTGTGCATGCAGCCAAAATAAGCACGTATAAGATATGCTAATTTAGATTCGGTTGACTCGAGTATGACATGTCATTTGGCGTATCTACTTTGTTATCTTTAAGGATTCCACCTTGAAAAGAGTTATTTCCTTATTGTCAATTAATTTTGAGATGAAACCTCATATTATTTAATGTGGTATCAAAACTTATAAACTTAAATGGGAATTCAGTCCAATAAAAATAAAAATTGAAATCCGATTTAAAATTGATGGTCCAAAAGAGCCACTGTTATATTTTTACAATCTTTTGATCAATGGTTTGAATATTTATGTATCTCCCCCATCATTGGTACATAGACACTACAAGGTTATTTGGATGAGTTGTTGCATGAGGGGTTGTACTATTATCTTTGCGTCATGTGATAGTTTGGAAAGAGATTATAGGAAATATCGGCTTAATTGGATGTGATTATTATCAAAGAGTCTAAAATAGGGTCCTTTTATTTAGGGGTTTTTGCATGTATATTAAAAAAACAAAATAATTTCATGTAGAGCACAATTCCCAAACTTATTCATTTGTGGCACAAAAGTAATTGAAGTCTATCAATTGAACTGATAGAAGTCTAAAGTCTATCAGTTGAACCGATAGAAATCTAAAATTCATTAGTTGAATTGATAGAAGTCTAAATAGAAATTTTGGGCAAAATGTATTATGAATGAAATTATTTTAAAAAATGGGCTACAATTGTAATAAAGAGCCATAAATATGCTATGGAGGATAAATTTCCAAAGTATTATTATAAGGGGATTTTGCATGTATATTAAAAAAAACAAAATAATTCCATGTATAGCACAATTCCCAAACTTATTTATTTGTGGCACAAAAATGATTGAAGTCTATCAATTTGCATTGTTCAATCACTCAAAATCGATTGAAGTCTATCAGTTGAACTGATAGGAGTCTAAAGTCTATCGGTTAAACTGATAGAAGTTTATTAGTTAAAGTGATAGAAATCTATCAATTGAACTGATAGAAGTCTAAAGTCTATCAGTTGAACTGATAGAAGTCTGATGATATTAAAATAACAATTTTGGGCAAAATGTGCTATAGATGAAATTATTTTAAAAAAATGTGTTATGGATGAAATTATTTTTAAAAATGTGTTATAATTATAATGAACAACAAAAAATATGCGGATAATTTCTCTTTTATTTATTTATTATTTTGAATCTCAAATTTCTTTATGTTTTGAGACTTTCTTTGCTAATATCATCTTCTTTATTTTACTTTTAAATTTTGTTTATAAATTTATGTTTTTGATTTTATATTACAAAAGGTAACAGAAAATCTTGCAAATTAAGGCTCCATTTGATAACCATTTCGTTTTTCAATTTTTGTTTCTAGTTTTTTATTTTTGGATTTTGGTTGTTTGTTTTAAAAAAAAAAATCGTATATGTTTGA

mRNA sequence

ATGAGTTCTTCTAGTTCTTCATCATCATCATCTTCAAGCTGCTCGAGCGCGTGGAGTTCAAAGCAAAACAAGCTGTTCGAAAATGCGTTGACGGTGTACGACAAAGAGTCGCCGGACAGGTGGCAGAAGATGGCGAGAGTCGTCGGATCGGGGAAGACGGCGGAGGAAGTGAAAAGGCACTACGAGATCCTGGTTGAGGACGTCCATAATATTGAGACCGGCAAAGTTCCTTTGCCCAATTACTCTAAACATTACTCCAACTTTATTCACGAAGAACAAAGGTCATTTATTCCCTCTTTCTCTTTCTCTAACCAATGTTTAGGGATCCAAACATACCGCCCGATCACTAAAGGGTCTAAAGCTACAGTGATTTTTTTTATTTTTGGATTTTGGTTGTTTGTTTTAAAAAAAAAAATCGTATATGTTTGA

Coding sequence (CDS)

ATGAGTTCTTCTAGTTCTTCATCATCATCATCTTCAAGCTGCTCGAGCGCGTGGAGTTCAAAGCAAAACAAGCTGTTCGAAAATGCGTTGACGGTGTACGACAAAGAGTCGCCGGACAGGTGGCAGAAGATGGCGAGAGTCGTCGGATCGGGGAAGACGGCGGAGGAAGTGAAAAGGCACTACGAGATCCTGGTTGAGGACGTCCATAATATTGAGACCGGCAAAGTTCCTTTGCCCAATTACTCTAAACATTACTCCAACTTTATTCACGAAGAACAAAGGTCATTTATTCCCTCTTTCTCTTTCTCTAACCAATGTTTAGGGATCCAAACATACCGCCCGATCACTAAAGGGTCTAAAGCTACAGTGATTTTTTTTATTTTTGGATTTTGGTTGTTTGTTTTAAAAAAAAAAATCGTATATGTTTGA

Protein sequence

MSSSSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETGKVPLPNYSKHYSNFIHEEQRSFIPSFSFSNQCLGIQTYRPITKGSKATVIFFIFGFWLFVLKKKIVYV

Homology

[Close]

BLAST of Sed0015680 vs. NCBI nr
Match: XP_008444713.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 77/93 (82.80%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 4  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEI 63
          +SS++SSSSS SS+WSSKQNK+FENALTVYDK+SPDRWQK+AR VG GKTA+EVKRHYE+
Sbjct: 2  ASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVG-GKTADEVKRHYEM 61

Query: 64 LVEDVHNIETGKVPLPNYSKHYS--NFIHEEQR 95
          LVEDVHNIETGKVPLPNYSKHYS  NF+ EEQR
Sbjct: 62 LVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQR 93

[Close]

BLAST of Sed0015680 vs. NCBI nr
Match: XP_031737271.1 (protein RADIALIS-like 4 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 77/94 (81.91%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 4  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEI 63
          +SS++SSSSS SS+WSSKQNK+FENALTVYDK+SPDRWQK+AR VG GKTA+EVKRHYE+
Sbjct: 2  ASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVG-GKTADEVKRHYEM 61

Query: 64 LVEDVHNIETGKVPLPNYSKHYS---NFIHEEQR 95
          LVEDVHNIETGKVPLPNYSKHYS   NF+ EEQR
Sbjct: 62 LVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR 94

[Close]

BLAST of Sed0015680 vs. NCBI nr
Match: XP_038886301.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 5.2e-29
Identity = 73/92 (79.35%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 5  SSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEIL 64
          +SS+SSSSS SS+WSSKQNK+FENALTVYDK+SPDRWQK+A  +G GKTAEEVK HY++L
Sbjct: 2  ASSASSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLASAIG-GKTAEEVKTHYDML 61

Query: 65 VEDVHNIETGKVPLPNYSKHYS--NFIHEEQR 95
          VEDVHNIETG+VPLPNYSKHYS  NF+ EEQR
Sbjct: 62 VEDVHNIETGRVPLPNYSKHYSYNNFLDEEQR 92

[Close]

BLAST of Sed0015680 vs. NCBI nr
Match: XP_023002559.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 134.0 bits (336), Expect = 9.9e-28
Identity = 72/93 (77.42%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 6  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILV 65
          SSSSSSSS S+ WSSKQNK+FENALTVYDK+SPDRWQK+A  VG GKTAEEVKRHYE+LV
Sbjct: 2  SSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVG-GKTAEEVKRHYEMLV 61

Query: 66 EDVHNIETGKVPLPNYS----KHYSNFIHEEQR 95
          EDVHNIE G++PLPNYS    ++YSNF+ EEQR
Sbjct: 62 EDVHNIEIGRIPLPNYSNSSKQYYSNFLDEEQR 93

[Close]

BLAST of Sed0015680 vs. NCBI nr
Match: KAG6598441.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.7 bits (330), Expect = 4.9e-27
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 15  SSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVHNIETG 74
           SS+WSSKQNK+FENALTVYDK+SPDRWQK+A  VG GKTAEEVKRHYE+LVEDVHNIETG
Sbjct: 4   SSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVG-GKTAEEVKRHYEMLVEDVHNIETG 63

Query: 75  KVPLPNYS---KHYS--NFIHEEQRSFIPSFS 102
           +VPLPNYS   KHYS   F+ EEQR F  S +
Sbjct: 64  RVPLPNYSKPRKHYSCNAFLDEEQRQFSSSLN 94

[Close]

BLAST of Sed0015680 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.9e-20
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 8  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVED 67
          +S+S S  S W+  QNK+FE AL VYDK++PDRW  +A+ VG GKT EEVKRHY+ILVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVG-GKTVEEVKRHYDILVED 61

Query: 68 VHNIETGKVPLPNYSKHYSN 88
          + NIETG+VPLPNY    SN
Sbjct: 62 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Sed0015680 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-19
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 8  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVED 67
          +SSS S SS+W+SKQNK+FE AL VYDK++PDRWQ +A+ VGS K+AEEVKRHY+ILVED
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGS-KSAEEVKRHYDILVED 61

Query: 68 VHNIETGKVPLPNY 82
          + NIE   VPLP Y
Sbjct: 62 LMNIEQDLVPLPKY 74

[Close]

BLAST of Sed0015680 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-18
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 6  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILV 65
          +SSS SS  S +W++KQNK FE AL  YD+++P+RWQ +A+VVG GKT EEVKRHYE+LV
Sbjct: 2  ASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVG-GKTTEEVKRHYELLV 61

Query: 66 EDVHNIETGKVPLPNY 82
          +D+++IE G VP PNY
Sbjct: 62 QDINSIENGHVPFPNY 76

[Close]

BLAST of Sed0015680 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-17
Identity = 44/80 (55.00%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 8  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVED 67
          +S+S S S++W+ K+NKLFE AL  YD+++PDRW  +AR VG GK+AEEV+RHYE+L+ D
Sbjct: 2  ASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVG-GKSAEEVRRHYELLIRD 61

Query: 68 VHNIETGKVPLPNYSKHYSN 88
          V++IE+G+ P PNY  + +N
Sbjct: 62 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of Sed0015680 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-17
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 9  SSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDV 68
          +S+      WS+K+NK FE AL VYDK++PDRW  +AR V  G+T EEVK+HYEILVED+
Sbjct: 2  ASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVEDI 61

Query: 69 HNIETGKVPLPNYSKHYSNFIHEEQR 95
            IE+GKVP PNY     N   +E+R
Sbjct: 62 KYIESGKVPFPNYRTTGGNMKTDEKR 86

[Close]

BLAST of Sed0015680 vs. ExPASy TrEMBL
Match: A0A0A0LNL9 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.0e-31
Identity = 78/100 (78.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 4   SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEI 63
           +SS++SSSSS SS+WSSKQNK+FENALTVYDK+SPDRWQK+AR VG GKTA+EVKRHYE+
Sbjct: 2   ASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVG-GKTADEVKRHYEM 61

Query: 64  LVEDVHNIETGKVPLPNYSKHYS---NFIHEEQRSFIPSF 101
           LVEDVHNIETGKVPLPNYSKHYS   NF+ EEQR  +  F
Sbjct: 62  LVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF 100

[Close]

BLAST of Sed0015680 vs. ExPASy TrEMBL
Match: A0A1S3BBR2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.0e-31
Identity = 77/93 (82.80%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 4  SSSSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEI 63
          +SS++SSSSS SS+WSSKQNK+FENALTVYDK+SPDRWQK+AR VG GKTA+EVKRHYE+
Sbjct: 2  ASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVG-GKTADEVKRHYEM 61

Query: 64 LVEDVHNIETGKVPLPNYSKHYS--NFIHEEQR 95
          LVEDVHNIETGKVPLPNYSKHYS  NF+ EEQR
Sbjct: 62 LVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQR 93

[Close]

BLAST of Sed0015680 vs. ExPASy TrEMBL
Match: A0A6J1KQS6 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.8e-28
Identity = 72/93 (77.42%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 6  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILV 65
          SSSSSSSS S+ WSSKQNK+FENALTVYDK+SPDRWQK+A  VG GKTAEEVKRHYE+LV
Sbjct: 2  SSSSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVG-GKTAEEVKRHYEMLV 61

Query: 66 EDVHNIETGKVPLPNYS----KHYSNFIHEEQR 95
          EDVHNIE G++PLPNYS    ++YSNF+ EEQR
Sbjct: 62 EDVHNIEIGRIPLPNYSNSSKQYYSNFLDEEQR 93

[Close]

BLAST of Sed0015680 vs. ExPASy TrEMBL
Match: A0A6J1CT30 (protein RADIALIS-like 6 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014035 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-27
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 10 SSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVH 69
          SSSS SS WSSKQNKLFENALTVYDKESP+RWQ +AR VG GKTAEEVK HY++LVEDVH
Sbjct: 3  SSSSSSSLWSSKQNKLFENALTVYDKESPERWQNLARAVG-GKTAEEVKTHYDMLVEDVH 62

Query: 70 NIETGKVPLPNY-SKHYSNFIHEEQR 95
          NIE+G+VPLPNY +K YSNF+ E+QR
Sbjct: 63 NIESGRVPLPNYNTKQYSNFLEEQQR 87

[Close]

BLAST of Sed0015680 vs. ExPASy TrEMBL
Match: A0A6J1CRB5 (protein RADIALIS-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014035 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-27
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 10 SSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDVH 69
          SSSS SS WSSKQNKLFENALTVYDKESP+RWQ +AR VG GKTAEEVK HY++LVEDVH
Sbjct: 3  SSSSSSSLWSSKQNKLFENALTVYDKESPERWQNLARAVG-GKTAEEVKTHYDMLVEDVH 62

Query: 70 NIETGKVPLPNY-SKHYSNFIHEEQR 95
          NIE+G+VPLPNY +K YSNF+ E+QR
Sbjct: 63 NIESGRVPLPNYNTKQYSNFLEEQQR 87

[Close]

BLAST of Sed0015680 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 98.2 bits (243), Expect = 5.6e-21
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 8  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVED 67
          +S+S S  S W+  QNK+FE AL VYDK++PDRW  +A+ VG GKT EEVKRHY+ILVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVG-GKTVEEVKRHYDILVED 61

Query: 68 VHNIETGKVPLPNYSKHYSN 88
          + NIETG+VPLPNY    SN
Sbjct: 62 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Sed0015680 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 98.2 bits (243), Expect = 5.6e-21
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 8  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVED 67
          +S+S S  S W+  QNK+FE AL VYDK++PDRW  +A+ VG GKT EEVKRHY+ILVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVG-GKTVEEVKRHYDILVED 61

Query: 68 VHNIETGKVPLPNYSKHYSN 88
          + NIETG+VPLPNY    SN
Sbjct: 62 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Sed0015680 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 97.4 bits (241), Expect = 9.6e-21
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 8  SSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVED 67
          +SSS S SS+W+SKQNK+FE AL VYDK++PDRWQ +A+ VGS K+AEEVKRHY+ILVED
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGS-KSAEEVKRHYDILVED 61

Query: 68 VHNIETGKVPLPNY 82
          + NIE   VPLP Y
Sbjct: 62 LMNIEQDLVPLPKY 74

[Close]

BLAST of Sed0015680 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-19
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 6  SSSSSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILV 65
          +SSS SS  S +W++KQNK FE AL  YD+++P+RWQ +A+VVG GKT EEVKRHYE+LV
Sbjct: 2  ASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVG-GKTTEEVKRHYELLV 61

Query: 66 EDVHNIETGKVPLPNY 82
          +D+++IE G VP PNY
Sbjct: 62 QDINSIENGHVPFPNY 76

[Close]

BLAST of Sed0015680 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 84.7 bits (208), Expect = 6.4e-17
Identity = 41/73 (56.16%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 9  SSSSSCSSAWSSKQNKLFENALTVYDKESPDRWQKMARVVGSGKTAEEVKRHYEILVEDV 68
          +SSS  +S+W+++++K FE AL  +DK++PDRWQK+AR VG GK+ EEVKRHYE+L+ DV
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVG-GKSTEEVKRHYELLLRDV 61

Query: 69 HNIETGKVPLPNY 82
          ++IE+G+ P P Y
Sbjct: 62 NDIESGRYPQPRY 73

The following BLAST results are available for this feature:

BLAST of Sed0015680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444713.1	1.2e-30	82.80	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
XP_031737271.1	1.2e-30	81.91	protein RADIALIS-like 4 [Cucumis sativus]	[more]
XP_038886301.1	5.2e-29	79.35	protein RADIALIS-like 3 [Benincasa hispida]	[more]
XP_023002559.1	9.9e-28	77.42	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
KAG6598441.1	4.9e-27	76.09	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0015680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	7.9e-20	63.75	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	1.3e-19	68.92	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	1.5e-18	61.84	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q6NNN0	1.3e-17	55.00	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q58FS3	1.6e-17	54.65	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Sed0015680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNL9	6.0e-31	78.00	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 S...	[more]
A0A1S3BBR2	6.0e-31	82.80	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1	[more]
A0A6J1KQS6	4.8e-28	77.42	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1	[more]
A0A6J1CT30	3.1e-27	79.07	protein RADIALIS-like 6 isoform X2 OS=Momordica charantia OX=3673 GN=LOC11101403...	[more]
A0A6J1CRB5	3.1e-27	79.07	protein RADIALIS-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC11101403...	[more]

BLAST of Sed0015680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.1	5.6e-21	63.75	RAD-like 6	[more]
AT1G75250.2	5.6e-21	63.75	RAD-like 6	[more]
AT1G19510.1	9.6e-21	68.92	RAD-like 5	[more]
AT4G39250.1	1.1e-19	61.84	RAD-like 1	[more]
AT2G18328.1	6.4e-17	56.16	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 14..67 e-value: 6.9E-5 score: 32.2
None	No IPR available	GENE3D	1.10.10.60		coord: 8..78 e-value: 2.6E-20 score: 74.0
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 13..90
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 13..90
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 16..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015680.1	Sed0015680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity