Sed0015636 (gene) Chayote v1

Overview


Name	Sed0015636
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrotran_gag_3 domain-containing protein
Location	LG03: 10810302 .. 10810631 (-)
RNA-Seq Expression	Sed0015636
Synteny	Sed0015636

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAACCACTTTGTTGTCGTCTTCATCTAGCAACAGTACTGTATTACCTCCAAATAGAATCCCTCCGACCACCGCAGGTTTGATCAGCTCGTCTTTTGGTCACCCTCTTAGCACTGTTCTCACGGTTAAACTTGATGAGAAAAATTATCTTCTTTGGAGAGGAATGGTTCTTGCTATTCTTCGAGGACAAAAGGTAGATGGATTTGTTTTAGGCACTAAGGAACAACCAGCTGAGTTAATCGAAGCTGTTGATGAATCTGGAGGTAAAGTTTCTTTACCCAACCCTCATTTTGATGAATGGGTAACAATCGACCAAACTCTCTAA

mRNA sequence

ATGGCTGAAACCACTTTGTTGTCGTCTTCATCTAGCAACAGTACTGTATTACCTCCAAATAGAATCCCTCCGACCACCGCAGGTTTGATCAGCTCGTCTTTTGGTCACCCTCTTAGCACTGTTCTCACGGTTAAACTTGATGAGAAAAATTATCTTCTTTGGAGAGGAATGGTTCTTGCTATTCTTCGAGGACAAAAGGTAGATGGATTTGTTTTAGGCACTAAGGAACAACCAGCTGAGTTAATCGAAGCTGTTGATGAATCTGGAGGTAAAGTTTCTTTACCCAACCCTCATTTTGATGAATGGGTAACAATCGACCAAACTCTCTAA

Coding sequence (CDS)

ATGGCTGAAACCACTTTGTTGTCGTCTTCATCTAGCAACAGTACTGTATTACCTCCAAATAGAATCCCTCCGACCACCGCAGGTTTGATCAGCTCGTCTTTTGGTCACCCTCTTAGCACTGTTCTCACGGTTAAACTTGATGAGAAAAATTATCTTCTTTGGAGAGGAATGGTTCTTGCTATTCTTCGAGGACAAAAGGTAGATGGATTTGTTTTAGGCACTAAGGAACAACCAGCTGAGTTAATCGAAGCTGTTGATGAATCTGGAGGTAAAGTTTCTTTACCCAACCCTCATTTTGATGAATGGGTAACAATCGACCAAACTCTCTAA

Protein sequence

MAETTLLSSSSSNSTVLPPNRIPPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLPNPHFDEWVTIDQTL

Homology

[Close]

BLAST of Sed0015636 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 7   LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLA 66
           +++  + ++ +PP  +       P  +   ++SFGHPL TVLTVKLD+KNY LWRGMVLA
Sbjct: 1   MTTEETENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLA 60

Query: 67  ILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHFDEWVTIDQTL 110
           +LRGQK DG+VLGT  +P + + + +  G    L  NP + EW  +DQ L
Sbjct: 61  VLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQAL 110

[Close]

BLAST of Sed0015636 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 7   LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLA 66
           +++  + ++ +PP  +       P  +   ++SFGHPL TVLTVKLD+KNY LWRGMVLA
Sbjct: 1   MTTEETENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLA 60

Query: 67  ILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHFDEWVTIDQTL 110
           +LRGQK DG+VLGT  +P + + + +  G    L  NP + EW  +DQ L
Sbjct: 61  VLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQAL 110

[Close]

BLAST of Sed0015636 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 25  TTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEA 84
           T    I+ SFGHPLST LTVKLD+KNY LW+GMVLA+L GQKVDG+VL TK  P++    
Sbjct: 18  TVFSAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCPSKYTTT 77

Query: 85  VDESGGKVSLPNPHFDEWVTIDQ 108
             ++G      NP ++EW  +DQ
Sbjct: 78  TSDTGMLEPTLNPAYEEWSAVDQ 100

[Close]

BLAST of Sed0015636 vs. NCBI nr
Match: KAA0047903.1 (retrotransposon polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-14
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 27  AGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVD 86
           A   S++FGH LS+VL VKLDE NY LW  MV+++L  QK+DGFVLGTK +P+++I   D
Sbjct: 21  ANASSTTFGHLLSSVLIVKLDEINYSLWHNMVMSVLNSQKIDGFVLGTKLKPSKVIFYAD 80

Query: 87  ESGGKVSLPNPHFDEWVTID 107
           E G  +   N  F+EWV +D
Sbjct: 81  EPGSSMFNLNLKFEEWVVVD 100

[Close]

BLAST of Sed0015636 vs. NCBI nr
Match: KGN65642.1 (hypothetical protein Csa_019906 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-13
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1  MAETTLLSSSSSNSTVLPPNRIPPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLA 60
          +AE    +   + S  + P      T   I++SFGHPL T L++KLD+K + LWRGMVLA
Sbjct: 6  LAENNTTTKIQNTSVTIAP------TYTAINTSFGHPLDTSLSIKLDDKKFGLWRGMVLA 65

Query: 61 ILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSL 95
          +LRGQKVDG+VLG K QP + +++ DE+    S+
Sbjct: 66 VLRGQKVDGYVLGAKSQPPQSLKSNDEASSSTSV 93

[Close]

BLAST of Sed0015636 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.5e-17
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 7   LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLA 66
           +++  + ++ +PP  +       P  +   ++SFGHPL TVLTVKLD+KNY LWRGMVLA
Sbjct: 1   MTTEETENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLA 60

Query: 67  ILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHFDEWVTIDQTL 110
           +LRGQK DG+VLGT  +P + + + +  G    L  NP + EW  +DQ L
Sbjct: 61  VLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQAL 110

[Close]

BLAST of Sed0015636 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.5e-17
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 7   LSSSSSNSTVLPPNRI------PPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLA 66
           +++  + ++ +PP  +       P  +   ++SFGHPL TVLTVKLD+KNY LWRGMVLA
Sbjct: 1   MTTEETENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLA 60

Query: 67  ILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSLP-NPHFDEWVTIDQTL 110
           +LRGQK DG+VLGT  +P + + + +  G    L  NP + EW  +DQ L
Sbjct: 61  VLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQAL 110

[Close]

BLAST of Sed0015636 vs. ExPASy TrEMBL
Match: A0A6J1CPQ7 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111013443 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 25  TTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEA 84
           T    I+ SFGHPLST LTVKLD+KNY LW+GMVLA+L GQKVDG+VL TK  P++    
Sbjct: 18  TVFSAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCPSKYTTT 77

Query: 85  VDESGGKVSLPNPHFDEWVTIDQ 108
             ++G      NP ++EW  +DQ
Sbjct: 78  TSDTGMLEPTLNPAYEEWSAVDQ 100

[Close]

BLAST of Sed0015636 vs. ExPASy TrEMBL
Match: A0A5A7TWE0 (Retrotransposon polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001810 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 27  AGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLAILRGQKVDGFVLGTKEQPAELIEAVD 86
           A   S++FGH LS+VL VKLDE NY LW  MV+++L  QK+DGFVLGTK +P+++I   D
Sbjct: 21  ANASSTTFGHLLSSVLIVKLDEINYSLWHNMVMSVLNSQKIDGFVLGTKLKPSKVIFYAD 80

Query: 87  ESGGKVSLPNPHFDEWVTID 107
           E G  +   N  F+EWV +D
Sbjct: 81  EPGSSMFNLNLKFEEWVVVD 100

[Close]

BLAST of Sed0015636 vs. ExPASy TrEMBL
Match: A0A0A0LXU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G477520 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1  MAETTLLSSSSSNSTVLPPNRIPPTTAGLISSSFGHPLSTVLTVKLDEKNYLLWRGMVLA 60
          +AE    +   + S  + P      T   I++SFGHPL T L++KLD+K + LWRGMVLA
Sbjct: 6  LAENNTTTKIQNTSVTIAP------TYTAINTSFGHPLDTSLSIKLDDKKFGLWRGMVLA 65

Query: 61 ILRGQKVDGFVLGTKEQPAELIEAVDESGGKVSL 95
          +LRGQKVDG+VLG K QP + +++ DE+    S+
Sbjct: 66 VLRGQKVDGYVLGAKSQPPQSLKSNDEASSSTSV 93

The following BLAST results are available for this feature:

BLAST of Sed0015636 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157748.1	1.3e-16	44.55	uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]	[more]
XP_022157750.1	1.3e-16	44.55	uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]	[more]
XP_022143579.1	2.3e-16	54.22	ankyrin repeat-containing protein NPR4-like [Momordica charantia]	[more]
KAA0047903.1	2.8e-14	52.50	retrotransposon polyprotein [Cucumis melo var. makuwa]	[more]
KGN65642.1	3.1e-13	45.74	hypothetical protein Csa_019906 [Cucumis sativus]	[more]

BLAST of Sed0015636 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0015636 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU77	6.5e-17	44.55	uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DTZ7	6.5e-17	44.55	uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CPQ7	1.1e-16	54.22	ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5A7TWE0	1.4e-14	52.50	Retrotransposon polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A0A0LXU0	1.5e-13	45.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G477520 PE=4 SV=1	[more]

BLAST of Sed0015636 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 42..79 e-value: 1.9E-5 score: 24.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015636.1	Sed0015636.1	mRNA