Sed0015635 (gene) Chayote v1

Overview


Name	Sed0015635
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein HEAT INTOLERANT 4-like
Location	LG05: 44094319 .. 44097000 (-)
RNA-Seq Expression	Sed0015635
Synteny	Sed0015635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTATTTTATGGCAGATTTGTACGAGCCCTTTATGGAAGACGAAATTGAACAAAGCACTAAGGTTCTAATTATTTTCCCAATCGATCCAAAGCATGTAAGATTTCGATCTATGCTGTTTTAAAAAGCGCATGCTTATGAGTTATGAATGTAAAGTAAAGTAAAGTGATTATTAGTTGAGCAATCGTATTCACAATTTGTAAATGTATATGTAAGTTTAACCTTTTTGTTTCATTTGTGAGTGGGTGAAATTATAAAAGAATGCGCAAAAAACTATACTTCTTTTTGTTATTGGCAGGTTTTCTATGAGTTTGATTGGGAATTAGATGAACTCGAGGTACGTGATATTAGTTCAAATGACTGTCTTGGTTATTATCTTTAATATTTTAGGTTGATGTTTGTTTCTATTTTTTGTCCGGGGAAATTTCCCTAAAGTATAATCTTTATGCTCTCTTTTGCATCTTCATGATTCACGTATAAATTGATTGAGGATGAATTTCCTATAAGTCAAAATGATGCATTGTTGACTTCTTAGGATTTCGTAAAGGAAAAAGTTAGAGAGGCCAAAAATGATAATAGAGAGGTAAACATTGTCAGTCATATTGTTATGATTATGTTTGTCATAAGTAACAATTTTGTACCAATTTTATTCGATTGTCTCTTTAGGTAGTTAAACATGGAAGAAAGGCATCGATGAAATTGACAAAGAAACTAAAGAAGCGTTTGAGAAGATGAAATTGTACAAGTTTATACAAACAACTGACAATACCTGATATATTCATCGTTAAGGTACAGTCCACTCTTCTTTAAGCCTCTTGGCTAATGGCGAGCAAAAATTAATTGAACTTGAATTTCATTTTTTTTAACAATGGCTATGAAATTATCTATTAGAGATTTTCCCATCTTTTTCAAACCACACTGATGTAAGGTGATTAAACTTACTTCCAATTAGTTAACATTCTTTAAATACTCTCCTTAGCTCTCACATTACTTACTGAGTAAGCCTATAGTTATGAAATTGGGATCTGTAAGTGTTCTTTTACAATCAAAGTTAGTAACCAACATGGATTGACCTAGTAATTAGTGCAATTCACTATAAATGATAAAATCGATTAAAGTGAAAGAGTTGAATCCATGATGGTCACATAGGATTTTGGAATAAGATTCAATACTATAAAGTTTTAAGATACTTGTCGTAGGAGAGTTAATTGTCATGTAAGACTAGTACTGTTCAGCCTACTCTTCTTTGGTTGTGATTGTGAATTGTTGTGTGCAATAAGATATGTATGCATATATACCTGTATGTCTTTTACTGCATTCTAGCTGGACATTTCTCAGACTTAAACTGCTAGAGTAATTTTATATTGTTTTTAACTTTTTAATAGTTTGAAGGCCGGACTGGCAATTTTACAAGGCAGCCTCCACCCTTTGGACTCTAACTTTTCCCAACCCATAAGGTGTGAACTCTAGTTTTCTTTGTGTTTGACATTAACATTTTCAAGGTTCAAGTGTTCTGTTAATAACCTTTATCTTTTATGTTTAAAAGCACTTGTAACAGACCTTTAGATTGTAAAGAAGAGCTAACATGTGTCTTCTTTCCACTTCATGTGATGTTCATCTATTTTGAACGTGCAGGGAATTCGAAATATTCTCTCTCTAGGGTGGTTGCTACTTCTCGTATTCACGAGGTTATGAGGGTGAAATTCCTCCAAAGAAAGCAGTTGAAATCAAACTAATTACGACGATAAATTTGCGTGTCGAGTGCTTAGACTCTTTCACTTTTAGCAATTCTACCGTAATCCAGAACCACATGATGAGCATTCTGCTGCCATTTGCATTCAAAAAATATTTCGAGGTTGTGGAAGGGCAGAAAACATTTTTCTGACTATCCAACAAAGGATTGTTAAAATTCAGGTATGTTAGAAGTAGAACTGTTTCTCTTGGTTGCCTCGTGGAGGGTTATTTCTTTTTCTTTGTAACGCCCCTTACTTCCTGCATCACCTTAAGTGAAGTCTCCACCTGCCCTAAGTTTCAAAAAACCAATAGCAAATAAACCATTCAAACCTCAACCTGCTAAGCAATACCATTATCATATTCTATACTCAGTAGTTCCAACAAAATTATTTGCAATATTCATATACCAGTAATTCAGTCAACAATCTATTCTCCTATTCCAACCAGCACACACTAGCTCTTCCTTCAAATCTAAACAATCACTGCCCCTCTCACTCCCAACCCAAAGCTGTAAAAAATCGACTTTACATTCCTCTGCAGCACATTCAACTTCCCATTTCATACACTCCAACAGCTAGTATACATTATAAACAAAATGAAGGGAAATTCCTCACCTGCAAGTATGAGACCTCCCAGGTTGTTGTCGAACCCCTGCTGTTCCCAAACTCCCTGAAACAGAAGACATTACAAATTCACACTATACATTCCAGCTTGTAATTTGATATCAAAAGATAGTAAAAGTTTTTGGAATTCCAATTATTTCTCTATTCGTTTCCAAGGCAGCCAACCATTAAAAGTTGATTGAGTATACCCCATCAAACTCTCATTCACATTAACTTGGGGTGTTCACATTTTATCGGAAAACCGAACCGACCGACCAAAACCGACCGAATCAAGGTCGGTCGGTCGGTTTTTTGATAAGGTCGTTCGGAGTCGGTTAAATTAA

mRNA sequence

ATGCTTTATTTTATGGCAGATTTGTACGAGCCCTTTATGGAAGACGAAATTGAACAAAGCACTAAGGTTCTAATTATTTTCCCAATCGATCCAAAGCATGTTTTCTATGAGTTTGATTGGGAATTAGATGAACTCGAGGATGAATTTCCTATAAGTCAAAATGATGAAAAAGTTAGAGAGGCCAAAAATGATAATAGAGAGAAAGGCATCGATGAAATTGACAAAGAAACTAAAGAAGCGTTTGAGAAGATGAAATTGTACAAGTCGGTCGGTCGGTTTTTTGATAAGGTCGTTCGGAGTCGGTTAAATTAA

Coding sequence (CDS)

ATGCTTTATTTTATGGCAGATTTGTACGAGCCCTTTATGGAAGACGAAATTGAACAAAGCACTAAGGTTCTAATTATTTTCCCAATCGATCCAAAGCATGTTTTCTATGAGTTTGATTGGGAATTAGATGAACTCGAGGATGAATTTCCTATAAGTCAAAATGATGAAAAAGTTAGAGAGGCCAAAAATGATAATAGAGAGAAAGGCATCGATGAAATTGACAAAGAAACTAAAGAAGCGTTTGAGAAGATGAAATTGTACAAGTCGGTCGGTCGGTTTTTTGATAAGGTCGTTCGGAGTCGGTTAAATTAA

Protein sequence

MLYFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDELEDEFPISQNDEKVREAKNDNREKGIDEIDKETKEAFEKMKLYKSVGRFFDKVVRSRLN

Homology

[Close]

BLAST of Sed0015635 vs. NCBI nr
Match: XP_022941910.1 (protein HEAT INTOLERANT 4-like [Cucurbita moschata] >XP_023553945.1 protein HEAT INTOLERANT 4-like [Cucurbita pepo subsp. pepo] >KAG6600620.1 Protein HEAT INTOLERANT 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.9 bits (250), Expect = 6.7e-18
Identity = 63/108 (58.33%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y+PF EDEIEQST+V IIFPIDPK VF EFDWELDEL         E+E P +Q
Sbjct: 200 YCLPYFYQPFKEDEIEQSTEVPIIFPIDPKPVFCEFDWELDELEEFTDKLIEEEELPENQ 259

Query: 63  ND-------EKVREAKNDNRE------KGIDEIDKETKEAFEKMKLYK 89
            D       EKVREAK  NRE      K I+E+ KETKEAFEKMK YK
Sbjct: 260 KDAFKAFVKEKVREAKKANREAREARKKAIEEMSKETKEAFEKMKFYK 307

[Close]

BLAST of Sed0015635 vs. NCBI nr
Match: XP_022981812.1 (protein HEAT INTOLERANT 4-like [Cucurbita maxima])

HSP 1 Score: 100.9 bits (250), Expect = 6.7e-18
Identity = 63/108 (58.33%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y+PF EDEIEQST+V IIFPIDPK VF EFDWELDEL         E+E P +Q
Sbjct: 200 YCLPYFYQPFKEDEIEQSTEVPIIFPIDPKPVFCEFDWELDELEEFTDKLIEEEELPENQ 259

Query: 63  ND-------EKVREAKNDNRE------KGIDEIDKETKEAFEKMKLYK 89
            D       EKVREAK  NRE      K I+E+ KETKEAFEKMK YK
Sbjct: 260 KDAFKAFVKEKVREAKKANREAREARKKAIEEMSKETKEAFEKMKFYK 307

[Close]

BLAST of Sed0015635 vs. NCBI nr
Match: XP_023551830.1 (protein HEAT INTOLERANT 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 62/108 (57.41%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y PF EDE+EQST+V IIFPIDPK VF EFDWELDEL         E+E P SQ
Sbjct: 199 YCLPYFYHPFKEDEVEQSTEVPIIFPIDPKPVFCEFDWELDELEEFTDRLIEEEELPESQ 258

Query: 63  ND-------EKVREAKNDN------REKGIDEIDKETKEAFEKMKLYK 89
            D       EKVREAK  N      R+K I+E+ KETKEAFEKMK YK
Sbjct: 259 KDAFKDFVKEKVREAKKANRLAREARKKAIEEMSKETKEAFEKMKFYK 306

[Close]

BLAST of Sed0015635 vs. NCBI nr
Match: XP_022929550.1 (protein HEAT INTOLERANT 4-like [Cucurbita moschata] >KAG6577261.1 Protein HEAT INTOLERANT 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 62/108 (57.41%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y PF EDE+EQST+V IIFPIDPK VF EFDWELDEL         E+E P SQ
Sbjct: 199 YCLPYFYHPFKEDEVEQSTEVPIIFPIDPKPVFCEFDWELDELEEFTDKLIEEEELPESQ 258

Query: 63  ND-------EKVREAKNDN------REKGIDEIDKETKEAFEKMKLYK 89
            D       EKVREAK  N      R+K I+E+ KETKEAFEKMK YK
Sbjct: 259 KDAFKDFVKEKVREAKKANRLAREARKKAIEEMSKETKEAFEKMKFYK 306

[Close]

BLAST of Sed0015635 vs. NCBI nr
Match: XP_022985027.1 (protein HEAT INTOLERANT 4-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 62/108 (57.41%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y PF EDE+EQST+V IIFPIDPK VF EFDWELDEL         E+E P SQ
Sbjct: 199 YCLPYFYHPFKEDEVEQSTEVPIIFPIDPKPVFCEFDWELDELEEFTDKLIEEEELPESQ 258

Query: 63  ND-------EKVREAKNDN------REKGIDEIDKETKEAFEKMKLYK 89
            D       EKVREAK  N      R+K I+E+ KETKEAFEKMK YK
Sbjct: 259 KDSFKDFVKEKVREAKKANRLAREARKKAIEEMSKETKEAFEKMKFYK 306

[Close]

BLAST of Sed0015635 vs. ExPASy Swiss-Prot
Match: A2RVJ8 (Protein HEAT INTOLERANT 4 OS=Arabidopsis thaliana OX=3702 GN=HIT4 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y+PF EDE+EQST+V I+FP +P  V  EFDWE DEL         E+  P  Q
Sbjct: 297 YCLPYFYQPFKEDELEQSTEVQIMFPSEPP-VVCEFDWEFDELQEFVDKLVEEEALPAEQ 356

Query: 63  ND-------EKVREAKNDNRE------KGIDEIDKETKEAFEKMKLYK 89
            D       E+VR AK  NRE      K I+E+ ++TK+AF+KMK YK
Sbjct: 357 ADEFKEYVKEQVRAAKKANREAKDARKKAIEEMSEDTKQAFQKMKFYK 403

[Close]

BLAST of Sed0015635 vs. ExPASy TrEMBL
Match: A0A6J1IV15 (protein HEAT INTOLERANT 4-like OS=Cucurbita maxima OX=3661 GN=LOC111480844 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-18
Identity = 63/108 (58.33%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y+PF EDEIEQST+V IIFPIDPK VF EFDWELDEL         E+E P +Q
Sbjct: 200 YCLPYFYQPFKEDEIEQSTEVPIIFPIDPKPVFCEFDWELDELEEFTDKLIEEEELPENQ 259

Query: 63  ND-------EKVREAKNDNRE------KGIDEIDKETKEAFEKMKLYK 89
            D       EKVREAK  NRE      K I+E+ KETKEAFEKMK YK
Sbjct: 260 KDAFKAFVKEKVREAKKANREAREARKKAIEEMSKETKEAFEKMKFYK 307

[Close]

BLAST of Sed0015635 vs. ExPASy TrEMBL
Match: A0A6J1FV51 (protein HEAT INTOLERANT 4-like OS=Cucurbita moschata OX=3662 GN=LOC111447127 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-18
Identity = 63/108 (58.33%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y+PF EDEIEQST+V IIFPIDPK VF EFDWELDEL         E+E P +Q
Sbjct: 200 YCLPYFYQPFKEDEIEQSTEVPIIFPIDPKPVFCEFDWELDELEEFTDKLIEEEELPENQ 259

Query: 63  ND-------EKVREAKNDNRE------KGIDEIDKETKEAFEKMKLYK 89
            D       EKVREAK  NRE      K I+E+ KETKEAFEKMK YK
Sbjct: 260 KDAFKAFVKEKVREAKKANREAREARKKAIEEMSKETKEAFEKMKFYK 307

[Close]

BLAST of Sed0015635 vs. ExPASy TrEMBL
Match: A0A6J1J3R5 (protein HEAT INTOLERANT 4-like OS=Cucurbita maxima OX=3661 GN=LOC111483118 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.5e-18
Identity = 62/108 (57.41%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y PF EDE+EQST+V IIFPIDPK VF EFDWELDEL         E+E P SQ
Sbjct: 199 YCLPYFYHPFKEDEVEQSTEVPIIFPIDPKPVFCEFDWELDELEEFTDKLIEEEELPESQ 258

Query: 63  ND-------EKVREAKNDN------REKGIDEIDKETKEAFEKMKLYK 89
            D       EKVREAK  N      R+K I+E+ KETKEAFEKMK YK
Sbjct: 259 KDSFKDFVKEKVREAKKANRLAREARKKAIEEMSKETKEAFEKMKFYK 306

[Close]

BLAST of Sed0015635 vs. ExPASy TrEMBL
Match: A0A6J1EUP5 (protein HEAT INTOLERANT 4-like OS=Cucurbita moschata OX=3662 GN=LOC111436085 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.5e-18
Identity = 62/108 (57.41%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y PF EDE+EQST+V IIFPIDPK VF EFDWELDEL         E+E P SQ
Sbjct: 199 YCLPYFYHPFKEDEVEQSTEVPIIFPIDPKPVFCEFDWELDELEEFTDKLIEEEELPESQ 258

Query: 63  ND-------EKVREAKNDN------REKGIDEIDKETKEAFEKMKLYK 89
            D       EKVREAK  N      R+K I+E+ KETKEAFEKMK YK
Sbjct: 259 KDAFKDFVKEKVREAKKANRLAREARKKAIEEMSKETKEAFEKMKFYK 306

[Close]

BLAST of Sed0015635 vs. ExPASy TrEMBL
Match: A0A6J1C502 (uncharacterized protein LOC111008415 OS=Momordica charantia OX=3673 GN=LOC111008415 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.6e-17
Identity = 62/108 (57.41%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y+PF EDE EQST+V IIFPIDPK VF EFDWELDEL         E+E   SQ
Sbjct: 200 YCLPYFYQPFKEDEFEQSTEVPIIFPIDPKPVFCEFDWELDELEEFTDKLIEEEELSESQ 259

Query: 63  ND-------EKVREAKNDNRE------KGIDEIDKETKEAFEKMKLYK 89
            D       EKVREAK  NRE      K I+E+ KETKEAFEKMK YK
Sbjct: 260 KDAFKDFVKEKVREAKKANREAREARKKAIEEMSKETKEAFEKMKFYK 307

[Close]

BLAST of Sed0015635 vs. TAIR 10
Match: AT5G10010.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 3   YFMADLYEPFMEDEIEQSTKVLIIFPIDPKHVFYEFDWELDEL---------EDEFPISQ 62
           Y +   Y+PF EDE+EQST+V I+FP +P  V  EFDWE DEL         E+  P  Q
Sbjct: 297 YCLPYFYQPFKEDELEQSTEVQIMFPSEPP-VVCEFDWEFDELQEFVDKLVEEEALPAEQ 356

Query: 63  ND-------EKVREAKNDNRE------KGIDEIDKETKEAFEKMKLYK 89
            D       E+VR AK  NRE      K I+E+ ++TK+AF+KMK YK
Sbjct: 357 ADEFKEYVKEQVRAAKKANREAKDARKKAIEEMSEDTKQAFQKMKFYK 403

The following BLAST results are available for this feature:

BLAST of Sed0015635 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941910.1	6.7e-18	58.33	protein HEAT INTOLERANT 4-like [Cucurbita moschata] >XP_023553945.1 protein HEAT...	[more]
XP_022981812.1	6.7e-18	58.33	protein HEAT INTOLERANT 4-like [Cucurbita maxima]	[more]
XP_023551830.1	2.0e-17	57.41	protein HEAT INTOLERANT 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022929550.1	2.0e-17	57.41	protein HEAT INTOLERANT 4-like [Cucurbita moschata] >KAG6577261.1 Protein HEAT I...	[more]
XP_022985027.1	2.0e-17	57.41	protein HEAT INTOLERANT 4-like [Cucurbita maxima]	[more]

BLAST of Sed0015635 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVJ8	1.5e-12	45.37	Protein HEAT INTOLERANT 4 OS=Arabidopsis thaliana OX=3702 GN=HIT4 PE=1 SV=1	[more]

BLAST of Sed0015635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IV15	3.3e-18	58.33	protein HEAT INTOLERANT 4-like OS=Cucurbita maxima OX=3661 GN=LOC111480844 PE=4 ...	[more]
A0A6J1FV51	3.3e-18	58.33	protein HEAT INTOLERANT 4-like OS=Cucurbita moschata OX=3662 GN=LOC111447127 PE=...	[more]
A0A6J1J3R5	9.5e-18	57.41	protein HEAT INTOLERANT 4-like OS=Cucurbita maxima OX=3661 GN=LOC111483118 PE=4 ...	[more]
A0A6J1EUP5	9.5e-18	57.41	protein HEAT INTOLERANT 4-like OS=Cucurbita moschata OX=3662 GN=LOC111436085 PE=...	[more]
A0A6J1C502	3.6e-17	57.41	uncharacterized protein LOC111008415 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of Sed0015635 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10010.1	1.1e-13	45.37	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015635.1	Sed0015635.1	mRNA