Sed0015614 (gene) Chayote v1

Overview


Name	Sed0015614
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG04: 13312578 .. 13317844 (-)
RNA-Seq Expression	Sed0015614
Synteny	Sed0015614

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAGACCAAAGATGAGACTTTTGAGAAATTTAATGAGTGGAAAATTTTGATTGAGAAACAATCAGGAAAGCAAGTTAAGGTCTTAAGAACAGATAATGGGTTGGAGTTTCTAAATGAAAACTTCACAAATTGTGCAAACAATATGGTAAAGAGATTTCTGACTGTTTCTGGCACCCCTCAATAAAATGGACTTGCTAAGAGGTTCAATAGAACATTTTGGAGAAAGTGAGATGCATGCTATCTTTTGCTGGTTTGCCAAAGTCTTTTAAGGTGAGACAGTTAACACCGTTGCTTACATCATTAATCGAAGTCCTTCGACTACTTTGAATTTTAAGATTCCTCAAGAAATCTATATTGGTTCTCCATCAAATTTGAACCATATGAAAGTATTTGGTTATGCTACTTATGCACATACTCTGCCACATGCCTCCACAGTCGCACTCAACTTCTCTGCCGCGAGCAAAATCGGGTCGAACGATTCGAGTTTGTAAACAACTACGGTTGCACCCACTAGAGCCAAAGCCGTGAGTTTTAGAGCCATTGCCAAGCTCTGGGACAATGGCTAGTTGTTCGACTCGGACATTAACTTAGTGGTTTATCCATTTTGTCGAATTTTTTATTTTTTTTCCTTTGGAGAAATGTCGAATTCTATTTATTGGGTAACCCAACGAAATGTTGAAATATATATATATATATATATATATATATATATATATATATTAAATTCAATGATTTTTTTGACATTTTGTTTTTCCTTTTTCGACAAATTTTTTTGTTCTATTTTTTTTTTAATTTCAATTAATTATAGTCAAAATGTTTCAAAAAAAAATATAGACAAAGGAGGTTGAACACACAACTTTATTAAAATAAGGGAAATTGTGCTGGATGGTTCAATTTGACAAAATAATTGTAAATATGGACAAATTTAAAAATATTTCAATATTATTAATACTCATTATACAATATCATTTTATTATTAATACAAAATTATAAGTTAGTATAATATTGTGTATTAATATAGTATAGTGTATAATTATTAATACCTATGATTATGATTGCCATTTTTTTTTCCTTTTTGCCTAGTATTGTAAATACCTTTTCAATTTGACCTATTCTTAAAAAACTCCTTAAAATAAGCACATGTAGTAGATGATCAGAATACCAAGTGTTGACAGAGAAATTTCGACCAGATCGCCACATCATTATCCCAAATTTAATGGCGAAATAAAATTAAATTTTGAGACAATATTTCTCAAAATTGATTTTGACCAAAGTTTGGTTTATCTCGAATTTGGGTCAAGAATAAACCAGACCGAAGTTCATTTAGTGAACCGAACCAAAAAAGTCCAAAGCCAAAAGACCAGGCCTGAGGCCCAAGCCCATCAAAGTCCAAGCCCATGGTCCATAAGAGCTCTATAAATAGAAGAACTCTCTTTCATTTGAAGAGGGGAGAAATTTGAAGCTCCAGAGAGAATTCCACCAAATCGAAGACTCTCCAAATTTCCAAGGATCAAACAGCCTTTGAAATCCACTTCAAAAGCAACCAAATACGAAGAACGGTCATTCTGTTCTTCATTCAGAGAGAAAGAATCAGAGGATCAAACATAGAGATCGAACCACTTTCGCACAAACTCATCTCAAACTGAAGTTCAACTCCACGAAACCAAATTTCTCTGGAAATCTCGTGTGAACAAATTGGCACGCCCAGTGGGACCTCTCTACCTCTCATCTCAATCTCTCACACAAATCAAGCCACCATGTCTGGAAAAGCCACATCAACGACCGCTGCTCCAGAAGGCATGATCAAAGGAAGAAACACTACCTCGAAGATGCTTGCTCCAAGAAACTACACTGGACCTATCACGAGTAGTCGTTCCAAGTCCGTCGAGAGCAATGAACCTCAAGCAACACCAAAAGCGATCGCAAAAAGAATCGCAGGACTACTAGAGGGGACCTCTGATGAAATCGTCGTCAAAGATAACCCATTGTTCGACCAAGTCAGTCCTACCGTTGATCAACCAAAGGAGACATCTAATCCTGATGTGATGTCTGCTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCGGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAATAATTGAGGAAAGAGACTTAGAGATCGCTTACCTCAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAGTCCACATGAGAGAGTCAATGATAAAGGAAAGAACCCTCTCTTTGAGGCACAACCACAAGCTAATCGCACTCGGCCTCGGTCGCTTCCTTATCTCATCCCAACATGACTACGACGACGATCACGAACACTATTAGAGCTCAAGGTGGTGGGCTAGTTCAAAGTTCTCTTTTGTACTCCAAGCCATACACAAAGAGAATAGACAACTTAAGAATGCATGCAGGATACCAACCGCCTAAGTTTCAGCAGTTTGTTGGAAAAGGCAACCCCAAACAGCATGTTGCTCATTTCGTAGAGACTTGTGAAACCGCTGGAACTCGAGGGGACCTTCTCGTTAGGCAGTTTGTCCGAACGTTAAAGGGGAATGCGTTCGACTGGTATACTGATCTTGAAGCTGAAACGATAGATAGCTGGGAAGAGTTGGAGAGAGAGTTCCTTAATCGATTCTATAGCACGAGACGGACTGTCAGCATGATATAATTAACAAATGCGAGCAAATGGAAGGGCGAGCACTGTAAATCGACTATATTAACTGTTGGCGAGCTCTAAGTCTAGACTGCAAAGACCGCCTCACTGAAACGTCCGCGATCGACATCTGTATCCAAGGCATGCATTGGGGACTTCTATACATCCTGAAGGGAATCAAGCCTCGCACCTTTGAGGAGCTGGCCACCCGAACTCATGATATGGAACTGAGCATTGACGCAAAAGGAAACAAAGATTCTTTGGTCTTAGAAACCCGTAAAGAAAAGAAGGATTTCAAGCCCACAGAAAAAGTTACAAAAAATGTGGCAAATGAGTCAATGACCCTCGGTGCAACTCCATCAAAGTTTTCCCCAAAAGCAAAGGAAACAAAAGCTGAGAAACGACCAGTTGTAGAGCAACGACGTCGCCTAACGCTTCAGGAAAGACAAGAAAAAGTCTATCCATTTCCAGACTCCGATGTTGCTGACATGTTAGAGCAACTCATGGAAGCAAAACTCATCCAGTTGCTCGAGTGCAAGCGTCCCGAGGAGTTAGGCAAGGTAAATGATCTTAACTACTGTAAATACCATCGCGTTGTCAGCCATCCCATCGAGAAATGCTTCGTTCTGAAAGAGTTGATTCTGAGATTGGCTAGAGAAAAGAAAATTGAGTTGGACTTAGAGGAAGTAGCTAAAGCAAATCATGCTGATGTGGTTCTTCAGCCTAAGATACAACCACTCAAGGGTGCAACACTGTGTTGGTCTCAAAACTTTATTCAATTCGGCTCCGTTGAGCCAGTTTTTGTTCAATGTCAAAGGAGATCCTCAGACCACAACCTTCAGGCGGAAAATCAACAAGCTTCCATCTAAGAAAGATGTATTTTAGAGCCAACCGTAGATGAGAATGAAGGTTGGACTGCTGTAACCCGTCGTAGGAAACAAAAACAAACGTATGCTCAGAAAGAATCACGCTTATTTCAAGAGTCGAAGAGGAAGAGATTGCCTAAGAAACGAGGCAAAAGATGTGTAAGGAAATCTAAGCCCATCATAGAGGAGAACGAAGATTTTCTACGAGCACGTCATGCTATAACGTTGGCTGATTTCATCCCGAAGGAATTTTTGCGTGAAGGAAAAGATGAAGTGATAGAAATTTCTACATGTCATGCAATTTGCGCAAGTGATGACTCGGCGAGCTCTTCAAAAGCTGTCATTGAGCCTAAAGCTACGCTCTCTTTCAACATTGAAGATTTGATATCACTTCCTCAAATAGATAAAAACTCTCTGATTGAGGCATTATTAGACTCAAGTAGCGAGAATGTCAAAATACGTGTGACACACGCTCGCAGTTCGGCATGCATGTCCATAAGTTTCACAGAAGAGGATCTATTGTTGGGATCAAAGCCTCATAATCTTCCTTTGTATGTCTCGGGCTATATACGAGAGCAAAGAGTCTGGCGAATTCTCATTGATAATGGTTCGGTCGTCAACATAATGCCAAAGGTCACCTTGAAGCAGCTAGGCATCTCCATGGAAGAACTCTCCGACAGCAAGTTATTAATCCAAGGCTTCAACCAAGGCGGGCAACGGGCGATTGGCATGATACGAGTTGAGGTCATCATTGGCGAGCTGAGTGCAGATGCTTTGTTCTATGTTATAGATTGTAAGACAACATATCGACTACTTTTGGGACGACCCTGGATTCATGAAAATCGAGTTGTTACCTCCTCGTTGCATCAATGCTTTAAGTTTTACCAAAACGGGGTTAAGAAAGTAGAAGCTGACACAAATCCGTTCTTGGAGGCCGAGTCTCATTTCGCCGATGCAAAATTCTATGCAAAAAACGAGACTGTGGAGAAAACAGTGCCATAGGAGGTCCCTGAGTTAAAAGAAAATGAAAAAGCTAAGCTAAAACCAGAGGCCGACATAAAAAAGAAATGGGTAGTGAGAGAAGAAAAGTCATGCCCTGTAAAGATAGAGGCTTCAACGAGTCTAGTAGCTCCTAAGGCTCCAAAAGATGAGAAACTTCCAACCTCACCCATCTTGCGCTATGTCCCTATATCCCGACGGAAAAAGGGTGAAGCACCTTTCGCCGAATGTTCTAAAGATTTGAAACTAGGTGATATCGAAGTATTAAAGCAAAGTTTCACCACTCCTTTGACAAAGATGCAAAAGCAATAGAGTCAAAGGTACGAAGAAGATGAGAAGAATGTGGTTTTGCCTAAGAAACGAACAAAGGATGGATTTGACCCTAATGCGTACAGACTGCTGGCTAAAGCAGGGTATGATTTCACGACACATACCGAGTTCAAACGCTTAAGTATATTTGATGACCAAGCCGAGCTTTCTTCGACGTAAAAGAAACTGTTGAAGAAAGGTTACACTCTACCAACGTCAAGAAAAGGACTCGGATATAAGTCGCCAGAACCAGTTCGCATAACAAGAAGAGAGAAGGCAAAGGTGGAAGATGCCAACCACATAACCATTGAAGAGGTTGAAGAATCAAAGGAAAATAAGAATGTTGGTCATAGGGTACCCACCTTTAAATGCACTGGATTATCAACATCTCGTGTTTCAGCGTTTCAAAGGTTAGGTACATAA

mRNA sequence

ATGCTAAAGACCAAAGATGAGACTTTTGAGAAATTTAATGAGTGGAAAATTTTGATTGAGAAACAATCAGGAAAGCAAGTTAAGGTCTTAAGAACAGATAATGGGTTGGAGTTTCTAAATGAAAACTTCACAAATTGTGCAAACAATATGGTAAAGAGATTTCTGACTAGCAATGAACCTCAAGCAACACCAAAAGCGATCGCAAAAAGAATCGCAGGACTACTAGAGGGGACCTCTGATGAAATCGTCGTCAAAGATAACCCATTGTTCGACCAAGTCAGTCCTACCGTTGATCAACCAAAGGAGACATCTAATCCTGATGTGATGTCTGCTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCGGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAATAATTGAGGAAAGAGACTTAGAGATCGCTTACCTCAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAAGCCAACCGTAGATGAGAATGAAGGTTGGACTGCTGTAACCCGTCGTAGGAAACAAAAACAAACGTATGCTCAGAAAGAATCACGCTTATTTCAAGAGTCGAAGAGGAAGAGATTGCCTAAGAAACGAGGCAAAAGATGTGTAAGGAAATCTAAGCCCATCATAGAGGAGAACGAAGATTTTCTACGAGCACGTCATGCTATAACGTTGGCTGATTTCATCCCGAAGGAATTTTTGCGTGAAGGAAAAGATGAAGTGATAGAAATTTCTACATGTCATGCAATTTGCGCAAGTGATGACTCGGCGAGCTCTTCAAAAGCTGTCATTGAGCCTAAAGCTACGCTCTCTTTCAACATTGAAGATTTGATATCACTTCCTCAAATAGATAAAAACTCTCTGATTGAGGCATTATTAGACTCAAAGGCCGACATAAAAAAGAAATGGGTAGTGAGAGAAGAAAAGTCATGCCCTGTAAAGATAGAGGCTTCAACGAGTCTAGTAGCTCCTAAGGCTCCAAAAGATGAGAAACTTCCAACCTCACCCATCTTGCGCTATGTCCCTATATCCCGACGGAAAAAGGGTGAAGCACCTTTCGCCGAATGTTCTAAAGATTTGAAACTAGGTGATATCGAAAAACTGTTGAAGAAAGGTTACACTCTACCAACGTCAAGAAAAGGACTCGGATATAAGTCGCCAGAACCAGTTCGCATAACAAGAAGAGAGAAGGCAAAGGTGGAAGATGCCAACCACATAACCATTGAAGAGGTTGAAGAATCAAAGGAAAATAAGAATGTTGGTCATAGGGTACCCACCTTTAAATGCACTGGATTATCAACATCTCGTGTTTCAGCGTTTCAAAGGTTAGGTACATAA

Coding sequence (CDS)

ATGCTAAAGACCAAAGATGAGACTTTTGAGAAATTTAATGAGTGGAAAATTTTGATTGAGAAACAATCAGGAAAGCAAGTTAAGGTCTTAAGAACAGATAATGGGTTGGAGTTTCTAAATGAAAACTTCACAAATTGTGCAAACAATATGGTAAAGAGATTTCTGACTAGCAATGAACCTCAAGCAACACCAAAAGCGATCGCAAAAAGAATCGCAGGACTACTAGAGGGGACCTCTGATGAAATCGTCGTCAAAGATAACCCATTGTTCGACCAAGTCAGTCCTACCGTTGATCAACCAAAGGAGACATCTAATCCTGATGTGATGTCTGCTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCGGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAATAATTGAGGAAAGAGACTTAGAGATCGCTTACCTCAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAAGCCAACCGTAGATGAGAATGAAGGTTGGACTGCTGTAACCCGTCGTAGGAAACAAAAACAAACGTATGCTCAGAAAGAATCACGCTTATTTCAAGAGTCGAAGAGGAAGAGATTGCCTAAGAAACGAGGCAAAAGATGTGTAAGGAAATCTAAGCCCATCATAGAGGAGAACGAAGATTTTCTACGAGCACGTCATGCTATAACGTTGGCTGATTTCATCCCGAAGGAATTTTTGCGTGAAGGAAAAGATGAAGTGATAGAAATTTCTACATGTCATGCAATTTGCGCAAGTGATGACTCGGCGAGCTCTTCAAAAGCTGTCATTGAGCCTAAAGCTACGCTCTCTTTCAACATTGAAGATTTGATATCACTTCCTCAAATAGATAAAAACTCTCTGATTGAGGCATTATTAGACTCAAAGGCCGACATAAAAAAGAAATGGGTAGTGAGAGAAGAAAAGTCATGCCCTGTAAAGATAGAGGCTTCAACGAGTCTAGTAGCTCCTAAGGCTCCAAAAGATGAGAAACTTCCAACCTCACCCATCTTGCGCTATGTCCCTATATCCCGACGGAAAAAGGGTGAAGCACCTTTCGCCGAATGTTCTAAAGATTTGAAACTAGGTGATATCGAAAAACTGTTGAAGAAAGGTTACACTCTACCAACGTCAAGAAAAGGACTCGGATATAAGTCGCCAGAACCAGTTCGCATAACAAGAAGAGAGAAGGCAAAGGTGGAAGATGCCAACCACATAACCATTGAAGAGGTTGAAGAATCAAAGGAAAATAAGAATGTTGGTCATAGGGTACCCACCTTTAAATGCACTGGATTATCAACATCTCGTGTTTCAGCGTTTCAAAGGTTAGGTACATAA

Protein sequence

MLKTKDETFEKFNEWKILIEKQSGKQVKVLRTDNGLEFLNENFTNCANNMVKRFLTSNEPQATPKAIAKRIAGLLEGTSDEIVVKDNPLFDQVSPTVDQPKETSNPDVMSAMMAGDGGDDRMAEFERKLEQMMKIIEERDLEIAYLKNQMQNRETAESSQKPTVDENEGWTAVTRRRKQKQTYAQKESRLFQESKRKRLPKKRGKRCVRKSKPIIEENEDFLRARHAITLADFIPKEFLREGKDEVIEISTCHAICASDDSASSSKAVIEPKATLSFNIEDLISLPQIDKNSLIEALLDSKADIKKKWVVREEKSCPVKIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFAECSKDLKLGDIEKLLKKGYTLPTSRKGLGYKSPEPVRITRREKAKVEDANHITIEEVEESKENKNVGHRVPTFKCTGLSTSRVSAFQRLGT

Homology

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BLAST of Sed0015614 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 2.4e-27
Identity = 142/504 (28.17%), Postives = 206/504 (40.87%), Query Frame = 0


Query: 106 PDVMSAMMAGDGGDDRMAEFERKLEQMMK---IIEERDLEIA---YLKNQMQNRETAESS 165
           P+   +  AG+  D    ++ R +   ++   +++E  L +A    +K  ++   T E S
Sbjct: 408 PECKRSEQAGNVDDPNYCKYHRVISHPVEKYFVLKELILRLAREKKIKLDLEEEVTPEDS 467

Query: 166 QKP---TVDENEGWTAVTRRRKQKQTYAQKESRLFQESKR-KRLPKKRGKRCVRKSKPII 225
           Q+      +++EGWT VTRR+K+K T  QKESRL+   +R  +  K + K+  RK K + 
Sbjct: 468 QEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLVH 527

Query: 226 EENEDFLRARHAITLADFIPKEFLREGKDE----VIEIST-------------CHAICAS 285
           E+++DF R +  +TLADF P  FL + +DE    V   S+             C +I  S
Sbjct: 528 EKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDFS 587

Query: 286 D-DSASSSKAVIEPKATLSFNIEDLISLPQIDKNS---------------LIEALLDSKA 345
           D D    SK    P     +  E  +    +D  S               L+E L +SK 
Sbjct: 588 DEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSKL 647

Query: 346 DIK-----------KKWVVREEKSCPV--------------------------------- 405
            I+            K+ ++ + S  V                                 
Sbjct: 648 VIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHS 707

Query: 406 -KIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFAECSKDLKLGDIE------ 449
            K EASTS        DEK    PILRYVP+SRRKKGE+PF E  + LK+GDIE      
Sbjct: 708 GKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESF 767

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BLAST of Sed0015614 vs. NCBI nr
Match: KAA0063066.1 (uncharacterized protein E6C27_scaffold468G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-25
Identity = 116/404 (28.71%), Postives = 179/404 (44.31%), Query Frame = 0


Query: 154 ETAESSQKPTVDENEGWTAVTRRRKQKQTYAQKESRLFQESKRKRLPKKRGKRCVRKSKP 213
           E +   ++   +++EGW  VTRR+K+K     K+S    +    +  K + K+  RK K 
Sbjct: 217 EDSREKERSIEEDDEGWIVVTRRKKKKVNSDPKKSLASTKIGGNKAQKNKKKKMTRKLKL 276

Query: 214 IIEENEDFLRARHAITLADFIPKEFLREGKDEVIEISTCHAICASDDSASSSKAVIE--- 273
           + EEN+DF R +  +TL DF P  F  + +DE   +  CHAI A+++ +   +++ E   
Sbjct: 277 VHEENKDFPRPQRLVTLVDFFPTRFFCDHQDENPGVVACHAINATEEESIPLRSLEEEGV 336

Query: 274 PKATLSFNIEDLISLPQ-----------------------------------IDKNSLIE 333
            K    FN++DL+SL                                      D++ L+ 
Sbjct: 337 SKDLSRFNVDDLLSLISRNQSHPYQCIVEFSSIKFECSATYGSTLYCMSIDFSDEDLLLR 396

Query: 334 ALLDSKADIKK------------------KWVVREEKS---CPVKI---EASTSLVAPKA 393
           + L ++  +KK                  K+ ++ + S    P++I   EASTS      
Sbjct: 397 SKLYNRPFVKKVEADSNPFSKAESHFADVKFYLKNDNSPEVVPIEIYLGEASTSTTKSMI 456

Query: 394 PKDEKLPTSPILRYVPISRRKKGEAPFAECSKDLKLGDIE-------------------- 449
             DEK    PIL Y+P+SR KKGE+PF +  + LK+GDIE                    
Sbjct: 457 LIDEKTSNPPILHYIPLSRHKKGESPFVKSPQGLKVGDIEVIKESFTTLLTKITKQEIKI 516

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BLAST of Sed0015614 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-24
Identity = 132/520 (25.38%), Postives = 190/520 (36.54%), Query Frame = 0


Query: 154 ETAESSQKPTVDENEGWTAVTRRRKQKQTYAQKESRLFQESKR-KRLPKKRGKRCVRKSK 213
           E ++  ++   +++E WT VTRR+K+K T  QKE R ++  +R  +  K + K+  RK K
Sbjct: 361 EDSQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLK 420

Query: 214 PIIEENEDFLRARHAITLADFIPKEFLREGKDEVIEISTCHAICASDDSASSSKAVIEPK 273
            + +E++DF R +  ITLADF P  FL + +DE   +  CHAI A+++ +   +++ E K
Sbjct: 421 LMHKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEK 480

Query: 274 ATLS---FNIEDLISLPQIDKNSLIEALLDSKAD-------------------------- 333
            +     FN++DL+SLPQ  K  LI ALL+S A                           
Sbjct: 481 VSKDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLL 540

Query: 334 ------------------------------------------------------------ 393
                                                                       
Sbjct: 541 LGSKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGF 600

Query: 394 ----------IKK------------------KWVVREEKSCPV----------------- 449
                     +KK                  K+ ++ + S  V                 
Sbjct: 601 NQGSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLK 660

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BLAST of Sed0015614 vs. NCBI nr
Match: KAA0032751.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ98782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 1.8e-22
Identity = 125/482 (25.93%), Postives = 189/482 (39.21%), Query Frame = 0


Query: 130 EQMMKIIEERDLEIAYLKNQMQNRETAESSQKPTVDENEGWTAVTRRRKQKQTYAQKESR 189
           E ++++  E+ +E+  LK ++   E ++  ++   +++EGWT VTRR+K+K T  QKESR
Sbjct: 49  ELIVRLAHEKKIELD-LKEKVA-PEDSQEKERLIEEDDEGWTVVTRRKKRKSTQIQKESR 108

Query: 190 LFQESKR-KRLPKKRGKRCVRKSKPIIEENEDFLRARHAITLADFIPKEFLREGKDEVIE 249
            ++   R       + K+  RK K + EE++DF R +  +TLADF P  FL + +DE   
Sbjct: 109 FYRNYTRGNNTQNNKKKKKTRKLKLVHEEDKDFPRTQCLVTLADFFPTRFLCDHQDENPG 168

Query: 250 ISTCHAICASDDSASSSKAVIE--PKATLSFNIEDLISLPQIDKNSLIEALLDSKAD--- 309
           +  C AI A+ + +   + + E   K    FN++ L+SLPQ  K  LI A L+  A    
Sbjct: 169 VVACRAINATKEESIPLRLLEEEVSKDLSRFNVDGLLSLPQETKTILINASLNLAASSSS 228

Query: 310 ----------------IKKKWV-------------------------------------- 369
                           + + W+                                      
Sbjct: 229 APTATYENSRTTYKLLLSRPWIHGNGVVTSTLHQCFKFYQDVVKKVEADSNPFSEAESHF 288

Query: 370 ----------------------VREEKSCPV------------------KIEASTSLVAP 429
                                 V+ E +  +                  K EASTS    
Sbjct: 289 ADAKFYLKNDSSPEAVYVEVPLVKREDNLQLKSLASEEPHKSTRTFHSEKSEASTSTTKS 348

Query: 430 KAPKDEKLPTSPILRYVPISRRKKGEAPFAECSKDLKLGDIE------------------ 448
                +K    PILRYV +SR KKG++PF +    LK+GDIE                  
Sbjct: 349 VILMGKKTSNPPILRYVCLSRCKKGKSPFVKSPHGLKVGDIEVLKESFTTPLTKVTMQKI 408

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BLAST of Sed0015614 vs. NCBI nr
Match: KAA0043405.1 (hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 3.7e-20
Identity = 62/139 (44.60%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 319 KIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFAECSKDLKLGDI-------- 378
           K EASTS        DEK     ILRYVP+SRR+KGE+PF +  + LK+GD+        
Sbjct: 71  KGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLSLI 130

Query: 379 -EKLLKKGYTLPTSRKGLGYKSPEPVRITRREKAKVEDANHITIEEVEESKENKNVGHRV 438
            +KLL++G+ +P SRKG GYKSPEP+ I R+ K KV D+NHIT+ EV+  +E +    R+
Sbjct: 131 QKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQRI 190

Query: 439 PTFKCTGLSTSRVSAFQRL 449
             F        R + F+RL
Sbjct: 191 SAFDQIRPHVVRTTVFERL 209

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BLAST of Sed0015614 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-27
Identity = 142/504 (28.17%), Postives = 206/504 (40.87%), Query Frame = 0


Query: 106 PDVMSAMMAGDGGDDRMAEFERKLEQMMK---IIEERDLEIA---YLKNQMQNRETAESS 165
           P+   +  AG+  D    ++ R +   ++   +++E  L +A    +K  ++   T E S
Sbjct: 408 PECKRSEQAGNVDDPNYCKYHRVISHPVEKYFVLKELILRLAREKKIKLDLEEEVTPEDS 467

Query: 166 QKP---TVDENEGWTAVTRRRKQKQTYAQKESRLFQESKR-KRLPKKRGKRCVRKSKPII 225
           Q+      +++EGWT VTRR+K+K T  QKESRL+   +R  +  K + K+  RK K + 
Sbjct: 468 QEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLVH 527

Query: 226 EENEDFLRARHAITLADFIPKEFLREGKDE----VIEIST-------------CHAICAS 285
           E+++DF R +  +TLADF P  FL + +DE    V   S+             C +I  S
Sbjct: 528 EKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDFS 587

Query: 286 D-DSASSSKAVIEPKATLSFNIEDLISLPQIDKNS---------------LIEALLDSKA 345
           D D    SK    P     +  E  +    +D  S               L+E L +SK 
Sbjct: 588 DEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSKL 647

Query: 346 DIK-----------KKWVVREEKSCPV--------------------------------- 405
            I+            K+ ++ + S  V                                 
Sbjct: 648 VIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFHS 707

Query: 406 -KIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFAECSKDLKLGDIE------ 449
            K EASTS        DEK    PILRYVP+SRRKKGE+PF E  + LK+GDIE      
Sbjct: 708 GKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKESF 767

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BLAST of Sed0015614 vs. ExPASy TrEMBL
Match: A0A5A7V9E7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001830 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.4e-26
Identity = 116/404 (28.71%), Postives = 179/404 (44.31%), Query Frame = 0


Query: 154 ETAESSQKPTVDENEGWTAVTRRRKQKQTYAQKESRLFQESKRKRLPKKRGKRCVRKSKP 213
           E +   ++   +++EGW  VTRR+K+K     K+S    +    +  K + K+  RK K 
Sbjct: 217 EDSREKERSIEEDDEGWIVVTRRKKKKVNSDPKKSLASTKIGGNKAQKNKKKKMTRKLKL 276

Query: 214 IIEENEDFLRARHAITLADFIPKEFLREGKDEVIEISTCHAICASDDSASSSKAVIE--- 273
           + EEN+DF R +  +TL DF P  F  + +DE   +  CHAI A+++ +   +++ E   
Sbjct: 277 VHEENKDFPRPQRLVTLVDFFPTRFFCDHQDENPGVVACHAINATEEESIPLRSLEEEGV 336

Query: 274 PKATLSFNIEDLISLPQ-----------------------------------IDKNSLIE 333
            K    FN++DL+SL                                      D++ L+ 
Sbjct: 337 SKDLSRFNVDDLLSLISRNQSHPYQCIVEFSSIKFECSATYGSTLYCMSIDFSDEDLLLR 396

Query: 334 ALLDSKADIKK------------------KWVVREEKS---CPVKI---EASTSLVAPKA 393
           + L ++  +KK                  K+ ++ + S    P++I   EASTS      
Sbjct: 397 SKLYNRPFVKKVEADSNPFSKAESHFADVKFYLKNDNSPEVVPIEIYLGEASTSTTKSMI 456

Query: 394 PKDEKLPTSPILRYVPISRRKKGEAPFAECSKDLKLGDIE-------------------- 449
             DEK    PIL Y+P+SR KKGE+PF +  + LK+GDIE                    
Sbjct: 457 LIDEKTSNPPILHYIPLSRHKKGESPFVKSPQGLKVGDIEVIKESFTTLLTKITKQEIKI 516

[Close]

BLAST of Sed0015614 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-25
Identity = 132/520 (25.38%), Postives = 190/520 (36.54%), Query Frame = 0


Query: 154 ETAESSQKPTVDENEGWTAVTRRRKQKQTYAQKESRLFQESKR-KRLPKKRGKRCVRKSK 213
           E ++  ++   +++E WT VTRR+K+K T  QKE R ++  +R  +  K + K+  RK K
Sbjct: 361 EDSQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLK 420

Query: 214 PIIEENEDFLRARHAITLADFIPKEFLREGKDEVIEISTCHAICASDDSASSSKAVIEPK 273
            + +E++DF R +  ITLADF P  FL + +DE   +  CHAI A+++ +   +++ E K
Sbjct: 421 LMHKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEK 480

Query: 274 ATLS---FNIEDLISLPQIDKNSLIEALLDSKAD-------------------------- 333
            +     FN++DL+SLPQ  K  LI ALL+S A                           
Sbjct: 481 VSKDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLL 540

Query: 334 ------------------------------------------------------------ 393
                                                                       
Sbjct: 541 LGSKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGF 600

Query: 394 ----------IKK------------------KWVVREEKSCPV----------------- 449
                     +KK                  K+ ++ + S  V                 
Sbjct: 601 NQGSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLK 660

[Close]

BLAST of Sed0015614 vs. ExPASy TrEMBL
Match: A0A5D3BG93 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00910 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.6e-23
Identity = 125/482 (25.93%), Postives = 189/482 (39.21%), Query Frame = 0


Query: 130 EQMMKIIEERDLEIAYLKNQMQNRETAESSQKPTVDENEGWTAVTRRRKQKQTYAQKESR 189
           E ++++  E+ +E+  LK ++   E ++  ++   +++EGWT VTRR+K+K T  QKESR
Sbjct: 49  ELIVRLAHEKKIELD-LKEKVA-PEDSQEKERLIEEDDEGWTVVTRRKKRKSTQIQKESR 108

Query: 190 LFQESKR-KRLPKKRGKRCVRKSKPIIEENEDFLRARHAITLADFIPKEFLREGKDEVIE 249
            ++   R       + K+  RK K + EE++DF R +  +TLADF P  FL + +DE   
Sbjct: 109 FYRNYTRGNNTQNNKKKKKTRKLKLVHEEDKDFPRTQCLVTLADFFPTRFLCDHQDENPG 168

Query: 250 ISTCHAICASDDSASSSKAVIE--PKATLSFNIEDLISLPQIDKNSLIEALLDSKAD--- 309
           +  C AI A+ + +   + + E   K    FN++ L+SLPQ  K  LI A L+  A    
Sbjct: 169 VVACRAINATKEESIPLRLLEEEVSKDLSRFNVDGLLSLPQETKTILINASLNLAASSSS 228

Query: 310 ----------------IKKKWV-------------------------------------- 369
                           + + W+                                      
Sbjct: 229 APTATYENSRTTYKLLLSRPWIHGNGVVTSTLHQCFKFYQDVVKKVEADSNPFSEAESHF 288

Query: 370 ----------------------VREEKSCPV------------------KIEASTSLVAP 429
                                 V+ E +  +                  K EASTS    
Sbjct: 289 ADAKFYLKNDSSPEAVYVEVPLVKREDNLQLKSLASEEPHKSTRTFHSEKSEASTSTTKS 348

Query: 430 KAPKDEKLPTSPILRYVPISRRKKGEAPFAECSKDLKLGDIE------------------ 448
                +K    PILRYV +SR KKG++PF +    LK+GDIE                  
Sbjct: 349 VILMGKKTSNPPILRYVCLSRCKKGKSPFVKSPHGLKVGDIEVLKESFTTPLTKVTMQKI 408

[Close]

BLAST of Sed0015614 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-20
Identity = 62/139 (44.60%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 319 KIEASTSLVAPKAPKDEKLPTSPILRYVPISRRKKGEAPFAECSKDLKLGDI-------- 378
           K EASTS        DEK     ILRYVP+SRR+KGE+PF +  + LK+GD+        
Sbjct: 71  KGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLSLI 130

Query: 379 -EKLLKKGYTLPTSRKGLGYKSPEPVRITRREKAKVEDANHITIEEVEESKENKNVGHRV 438
            +KLL++G+ +P SRKG GYKSPEP+ I R+ K KV D+NHIT+ EV+  +E +    R+
Sbjct: 131 QKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQRI 190

Query: 439 PTFKCTGLSTSRVSAFQRL 449
             F        R + F+RL
Sbjct: 191 SAFDQIRPHVVRTTVFERL 209

The following BLAST results are available for this feature:

BLAST of Sed0015614 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061113.1	2.4e-27	28.17	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
KAA0063066.1	1.3e-25	28.71	uncharacterized protein E6C27_scaffold468G001830 [Cucumis melo var. makuwa]	[more]
TYK05005.1	1.5e-24	25.38	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032751.1	1.8e-22	25.93	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ98782.1 ty3-gyp...	[more]
KAA0043405.1	3.7e-20	44.60	hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0015614 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0015614 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY54	1.2e-27	28.17	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V9E7	6.4e-26	28.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C0W6	7.1e-25	25.38	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BG93	8.6e-23	25.93	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TPR5	1.8e-20	44.60	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Sed0015614 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 122..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015614.1	Sed0015614.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process