Sed0015501 (gene) Chayote v1

Overview
NameSed0015501
Typegene
OrganismSechium edule (Chayote v1)
DescriptionProlamin_like domain-containing protein
LocationLG09: 4482138 .. 4482539 (+)
RNA-Seq ExpressionSed0015501
SyntenySed0015501
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGAAGACCAACATAGTGGGGACATTAATGGGGATTCTCTCCTGGACAATAATTTTGGCAACCTTAGTTCCACGCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTACGACCATGTTTAGATATGGTGAAAAATGCAAAATGTCAGGTGGAACTTTACAAGTACTATTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGTGTCTTCATCAAATTCATGGGGAAGAGTTGCGCCAAAGCTTTTACTTTTTGGTTTGACTTTCTAGATTTGGAAGTCTTGAAACCTAATCCCATGATGGCATATAAAAATTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATATTAA

mRNA sequence

ATGACAAAGAAGACCAACATAGTGGGGACATTAATGGGGATTCTCTCCTGGACAATAATTTTGGCAACCTTAGTTCCACGCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTACGACCATGTTTAGATATGGTGAAAAATGCAAAATGTCAGGTGGAACTTTACAAGTACTATTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGTGTCTTCATCAAATTCATGGGGAAGAGTTGCGCCAAAGCTTTTACTTTTTGGTTTGACTTTCTAGATTTGGAAGTCTTGAAACCTAATCCCATGATGGCATATAAAAATTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATATTAA

Coding sequence (CDS)

ATGACAAAGAAGACCAACATAGTGGGGACATTAATGGGGATTCTCTCCTGGACAATAATTTTGGCAACCTTAGTTCCACGCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTACGACCATGTTTAGATATGGTGAAAAATGCAAAATGTCAGGTGGAACTTTACAAGTACTATTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGTGTCTTCATCAAATTCATGGGGAAGAGTTGCGCCAAAGCTTTTACTTTTTGGTTTGACTTTCTAGATTTGGAAGTCTTGAAACCTAATCCCATGATGGCATATAAAAATTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATATTAA

Protein sequence

MTKKTNIVGTLMGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYYFNISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPMMAYKNCVRRLDAPPPSKY
Homology
BLAST of Sed0015501 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 8.3e-45
Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 14  ILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYYFN 73
           IL + I L+ LV  S   +DYNSPIW+GWVDEDRGYTLRPCLD +++AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  ISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPMMAYKNCVRRLDAPPPSKY 133
           ISKKELDLNCCVF+K MGK CA+AFTFW+ F  LE+ +PNPM  Y NC+ RLDAPPP+ +
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

BLAST of Sed0015501 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 3.0e-42
Identity = 87/135 (64.44%), Postives = 100/135 (74.07%), Query Frame = 0

Query: 1   MTKKTNIVGTLMGILSWTIILATLVPRSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMV 60
           M   TN VG ++ IL   + LA LV  SMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KNAKCQVELYKYYFNISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPMMAY 120
           K+AKCQV+LY YYFNISKKELDL CCVF+K MGK CA AF  W++F  LEV +PNPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 KNCVRRLDAPPPSKY 134
            NCV RL A PP+ +
Sbjct: 121 NNCVGRLQALPPTPF 135

BLAST of Sed0015501 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.9 bits (450), Expect = 5.6e-41
Identity = 84/122 (68.85%), Postives = 93/122 (76.23%), Query Frame = 0

Query: 12  MGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYY 71
           M IL   I LA L   S A DDYNSPIW+ WVDEDRG  LRPCLDM+K+AKCQVELY YY
Sbjct: 4   MVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELYNYY 63

Query: 72  FNISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPMMAYKNCVRRLDAPPPS 131
           FNISKKELDLNCCVF+K MGK CA+AF  WF F + EV + NPM  YKNCV RLDA PP+
Sbjct: 64  FNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDALPPA 123

Query: 132 KY 134
            +
Sbjct: 124 PF 125

BLAST of Sed0015501 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-34
Identity = 72/112 (64.29%), Postives = 88/112 (78.57%), Query Frame = 0

Query: 4   KTNIVGTLMGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKC 63
           KTN +  ++ +LS TI LA LV      +DYNS IWN W+DEDR +TLRPCLD +++AKC
Sbjct: 30  KTNAMRAMLILLS-TINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKC 89

Query: 64  QVELYKYYFNISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPM 116
           QVELY YYFNISK+ELDLNCCVF+K MGK CA+AFTFW+ F  LE+ +PNPM
Sbjct: 90  QVELYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPM 140

BLAST of Sed0015501 vs. NCBI nr
Match: KAG6575249.1 (hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.1 bits (388), Expect = 8.7e-34
Identity = 72/130 (55.38%), Postives = 93/130 (71.54%), Query Frame = 0

Query: 1   MTKKTNIVGTLMGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKN 60
           M K+T+ +G ++ +L   + L   V  + A  DYNSPIW+ W+DEDR Y LRPCL+++K+
Sbjct: 1   MAKETSTLGAMV-VLLLAVNLQGFVRVTSADVDYNSPIWDRWLDEDRAYYLRPCLNLMKS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPMMAYKN 120
           AKCQV+LY  YFN+SK+ELDLNCCVF+K MGK+CA  F  WFD+   EV KPNPM  YK 
Sbjct: 61  AKCQVQLYNNYFNLSKEELDLNCCVFVKVMGKNCALDFAGWFDYPIFEVYKPNPMNLYKR 120

Query: 121 CVRRLDAPPP 131
           CV RL +  P
Sbjct: 121 CVARLSSSIP 129

BLAST of Sed0015501 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.0e-45
Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 14  ILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYYFN 73
           IL + I L+ LV  S   +DYNSPIW+GWVDEDRGYTLRPCLD +++AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  ISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPMMAYKNCVRRLDAPPPSKY 133
           ISKKELDLNCCVF+K MGK CA+AFTFW+ F  LE+ +PNPM  Y NC+ RLDAPPP+ +
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

BLAST of Sed0015501 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.4e-42
Identity = 87/135 (64.44%), Postives = 100/135 (74.07%), Query Frame = 0

Query: 1   MTKKTNIVGTLMGILSWTIILATLVPRSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMV 60
           M   TN VG ++ IL   + LA LV  SMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KNAKCQVELYKYYFNISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPMMAY 120
           K+AKCQV+LY YYFNISKKELDL CCVF+K MGK CA AF  W++F  LEV +PNPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 KNCVRRLDAPPPSKY 134
            NCV RL A PP+ +
Sbjct: 121 NNCVGRLQALPPTPF 135

BLAST of Sed0015501 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.5e-42
Identity = 83/131 (63.36%), Postives = 99/131 (75.57%), Query Frame = 0

Query: 1   MTKKTNIVGTLMGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKN 60
           M  KTN +  ++ +LS  I LA LV  S   +DYNS IWN W+DEDR +TLRPCLD +++
Sbjct: 1   MANKTNAMRAMVILLS-AINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPMMAYKN 120
           AKCQVELY YYFNISKKELDLNCCVF+K MGK CA+AFTFW+ F  LE+ +PNPM  Y N
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 120

Query: 121 CVRRLDAPPPS 132
           C  RL APPP+
Sbjct: 121 CATRLSAPPPT 130

BLAST of Sed0015501 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32
Identity = 68/131 (51.91%), Postives = 86/131 (65.65%), Query Frame = 0

Query: 1   MTKKTNIVGTLMGILSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKN 60
           M   T ++  ++ +    +    LV  S   D+  S IW+ W+DEDR  TL PCL M+++
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPMMAYKN 120
            KCQVELY YYFNISKKELDL+CCV++ +MGK CA AF FWF F  LE LKPNPM  Y N
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CVRRLDAPPPS 132
           C +RL  P P+
Sbjct: 121 CFKRLTFPAPT 131

BLAST of Sed0015501 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.9e-28
Identity = 61/133 (45.86%), Postives = 87/133 (65.41%), Query Frame = 0

Query: 1   MTKKTNIVGTLMGILSWTIILA---TLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDM 60
           M K +N  G L+ ++  ++++     LV  S+  D+  S IW+GW+D+DR   L  CL +
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  VKNAKCQVELYKYYFNISKKELDLNCCVFIKFMGKSCAKAFTFWFDFLDLEVLKPNPMMA 120
           +K+ KCQVELY YYFN SKKE+DL+CCV++ ++G+ CA +F  WF  L  + LKPNPM  
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YKNCVRRLDAPPP 131
           Y NC +RL  P P
Sbjct: 121 YNNCFKRLTVPAP 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046835.18.3e-4569.17hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004... [more]
KAA0046841.13.0e-4264.44hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044... [more]
KAG6578867.15.6e-4168.85hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646662.11.7e-3464.29hypothetical protein Csa_004797, partial [Cucumis sativus][more]
KAG6575249.18.7e-3455.38hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C2804.0e-4569.17Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7TZR11.4e-4264.44Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A0A0KEB82.5e-4263.36Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543... [more]
A0A0A0KQ411.3e-3251.91Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818... [more]
A0A0A0L5355.9e-2845.86Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 54..99
e-value: 7.6E-5
score: 22.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015501.1Sed0015501.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity