Sed0015452 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGTTGATGAATTCTACCGGCAACCGGCTGCCGTTCCTTTCAAGTGGGAGATCAAACCCGGCGTCCCCAAGAACCACGACCGGCTCCCCCAGTTTCCCGGTCACTCTCCTCAACTTCATCCACCGCCGCACAAGCAGAGGCTGAAGCCTCCTCCGGCCGTCACCCATTTCCACCATCCTTCGAACTCCCTTCACTCGTCCTCCCGAACCCGGTCCGACCGGTGGCCATTCTCCCGGTCCAACCGCCGCGAACCCGACCTGGTCTCCGTCGGTTGCTTTCCCTCCTCGTCGTTGCCTTCCCGGAAATCGAGCAAGAGCGCGAACCGGACACCCGAACCGGATTACAGCTCTGAATCGGAGACTTTGTCGCGATGGTCGGTTCCTACCAGAAAGTCGTCGATTTCGCCGTTCCGATATTCGGTTTCGTCGTCGCCGGCGTCTTTCTCGTCCTACTCGTACCAGTCATCGCCACGTCAGACTAGTGATTCTGAGTGGGCCGGGTTTGGGCTATTTTGATTTGGCCCATTCTCGGATCCTATAAGACCAAGTGCATTAAAAGAAGTTGGGCTGAGTTTCTGAGGCCCATATGTAGCCCATCTATCAAGTGCTTTAGTGGGCTTTAGGCAAAAGTCAGGAAGCTTTGAATCCCAATTGTATTGTGCTCTGCCATCGTAGGGATTTTCTTAAAACCCCCTGTATGCTGCTCTATATAAACAATAAAGATATTTTGTTTCCTTGAGGTATTTGATTTATGCTTTATTTTAAATAATTAACTTTCATGAAATTAATCTTATCTAGAATCGGCCAACAATAACTGTAACTCAACAACATTAGTCTATATCTAATAAAGAGATTATGGTTTAAATCACTACTAAAAAAATGTTTATTAGGACTATTAGCTTTAGCTTTACTAACCTAGAATTTAATACTTCACTTTTGAAGTCAAAAACTGATAACCAATGTCTAAAACTAAACAACATGAAGAAGATGAAAAATAAAACATCTTTTTTGAAGTTTGGCAAAGAAAAATAACTCAACTACTGACAATTGATTAAGGGACTATGGATTCAAATCTTCCAACTCCTATAATTTTTTTTTTTTTTTGAGAAGTGTTTGGGACAAGGGGATCAAACTGGAAGATGGAGATAAAATCCCTCTACTGATCTTTGGACTATTACAAATTATTCATCCCATAGTTTCTATTCATCTTTCCACGATTTCATTTCTTCTAATCATTTTTCAATATTTTAATTCATCTGTAATCCTTTCATGCACTTCTGACATAGATAATAATTTTTTATAGTCATTTATTATGGTAATAGTTTTTCATAATTATTCCATTCCCATAAAACATTTTAATAATTATTCAATTCACGTCAAACAAGTGTAATAACTTCTTCATAATCATTCTTACACCTCAAACACAAATACAAAATTCTAGGGTATCATTCTTTCGTTTTATTTCTCACTTCTTACAAGAATGCCCTTGAGGTTTTTCCGACTAAGTTAA ATGGACGTTGATGAATTCTACCGGCAACCGGCTGCCGTTCCTTTCAAGTGGGAGATCAAACCCGGCGTCCCCAAGAACCACGACCGGCTCCCCCAGTTTCCCGGTCACTCTCCTCAACTTCATCCACCGCCGCACAAGCAGAGGCTGAAGCCTCCTCCGGCCGTCACCCATTTCCACCATCCTTCGAACTCCCTTCACTCGTCCTCCCGAACCCGGTCCGACCGGTGGCCATTCTCCCGGTCCAACCGCCGCGAACCCGACCTGGTCTCCGTCGGTTGCTTTCCCTCCTCGTCGTTGCCTTCCCGGAAATCGAGCAAGAGCGCGAACCGGACACCCGAACCGGATTACAGCTCTGAATCGGAGACTTTGTCGCGATGGTCGGGTATCATTCTTTCGTTTTATTTCTCACTTCTTACAAGAATGCCCTTGAGGTTTTTCCGACTAAGTTAA ATGGACGTTGATGAATTCTACCGGCAACCGGCTGCCGTTCCTTTCAAGTGGGAGATCAAACCCGGCGTCCCCAAGAACCACGACCGGCTCCCCCAGTTTCCCGGTCACTCTCCTCAACTTCATCCACCGCCGCACAAGCAGAGGCTGAAGCCTCCTCCGGCCGTCACCCATTTCCACCATCCTTCGAACTCCCTTCACTCGTCCTCCCGAACCCGGTCCGACCGGTGGCCATTCTCCCGGTCCAACCGCCGCGAACCCGACCTGGTCTCCGTCGGTTGCTTTCCCTCCTCGTCGTTGCCTTCCCGGAAATCGAGCAAGAGCGCGAACCGGACACCCGAACCGGATTACAGCTCTGAATCGGAGACTTTGTCGCGATGGTCGGGTATCATTCTTTCGTTTTATTTCTCACTTCTTACAAGAATGCCCTTGAGGTTTTTCCGACTAAGTTAA MDVDEFYRQPAAVPFKWEIKPGVPKNHDRLPQFPGHSPQLHPPPHKQRLKPPPAVTHFHHPSNSLHSSSRTRSDRWPFSRSNRREPDLVSVGCFPSSSLPSRKSSKSANRTPEPDYSSESETLSRWSGIILSFYFSLLTRMPLRFFRLS Homology
BLAST of Sed0015452 vs. NCBI nr
Match: XP_038899347.1 (uncharacterized protein LOC120086669 [Benincasa hispida]) HSP 1 Score: 171.8 bits (434), Expect = 4.5e-39 Identity = 91/127 (71.65%), Postives = 101/127 (79.53%), Query Frame = 0
BLAST of Sed0015452 vs. NCBI nr
Match: XP_022940016.1 (uncharacterized protein LOC111445775 [Cucurbita moschata]) HSP 1 Score: 162.5 bits (410), Expect = 2.7e-36 Identity = 89/129 (68.99%), Postives = 98/129 (75.97%), Query Frame = 0
BLAST of Sed0015452 vs. NCBI nr
Match: XP_004142634.1 (uncharacterized protein LOC101220757 [Cucumis sativus]) HSP 1 Score: 161.4 bits (407), Expect = 6.1e-36 Identity = 86/128 (67.19%), Postives = 98/128 (76.56%), Query Frame = 0
BLAST of Sed0015452 vs. NCBI nr
Match: XP_008444194.1 (PREDICTED: uncharacterized protein LOC103487607 [Cucumis melo]) HSP 1 Score: 161.4 bits (407), Expect = 6.1e-36 Identity = 92/150 (61.33%), Postives = 107/150 (71.33%), Query Frame = 0
BLAST of Sed0015452 vs. NCBI nr
Match: KAE8649619.1 (hypothetical protein Csa_012837 [Cucumis sativus]) HSP 1 Score: 161.4 bits (407), Expect = 6.1e-36 Identity = 86/128 (67.19%), Postives = 98/128 (76.56%), Query Frame = 0
BLAST of Sed0015452 vs. ExPASy TrEMBL
Match: A0A6J1FHC7 (uncharacterized protein LOC111445775 OS=Cucurbita moschata OX=3662 GN=LOC111445775 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 1.3e-36 Identity = 89/129 (68.99%), Postives = 98/129 (75.97%), Query Frame = 0
BLAST of Sed0015452 vs. ExPASy TrEMBL
Match: A0A1S3BAM4 (uncharacterized protein LOC103487607 OS=Cucumis melo OX=3656 GN=LOC103487607 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 2.9e-36 Identity = 92/150 (61.33%), Postives = 107/150 (71.33%), Query Frame = 0
BLAST of Sed0015452 vs. ExPASy TrEMBL
Match: A0A0A0KY52 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G361790 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 2.1e-34 Identity = 89/141 (63.12%), Postives = 102/141 (72.34%), Query Frame = 0
BLAST of Sed0015452 vs. ExPASy TrEMBL
Match: A0A6J1ISY3 (uncharacterized protein LOC111480325 OS=Cucurbita maxima OX=3661 GN=LOC111480325 PE=4 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 8.0e-34 Identity = 86/129 (66.67%), Postives = 95/129 (73.64%), Query Frame = 0
BLAST of Sed0015452 vs. ExPASy TrEMBL
Match: A0A6J1BQH3 (uncharacterized protein DKFZp434B061-like OS=Momordica charantia OX=3673 GN=LOC111004696 PE=4 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 4.0e-33 Identity = 86/133 (64.66%), Postives = 96/133 (72.18%), Query Frame = 0
BLAST of Sed0015452 vs. TAIR 10
Match: AT1G77400.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes - 56 (source: NCBI BLink). ) HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10 Identity = 56/193 (29.02%), Postives = 79/193 (40.93%), Query Frame = 0
BLAST of Sed0015452 vs. TAIR 10
Match: AT1G21695.1 (hydroxyproline-rich glycoprotein family protein ) HSP 1 Score: 47.0 bits (110), Expect = 1.6e-05 Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|