Sed0015423 (gene) Chayote v1

Overview


Name	Sed0015423
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	LG05: 717901 .. 718843 (+)
RNA-Seq Expression	Sed0015423
Synteny	Sed0015423

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTGTCCACACTCTCCCTTCAATATTTAGTTCCACACACACCTTCCATTGGAGAAGAAAAAAGGAAACCCTAGTTCCAAAAAAAAAAACTACCAACTTTCCTTCTTCAAATTGAACCAAAAAAATCACAAATTTTTGATCCCCAAATGGATTCAATCACTGAATTTGAAAGCTTCAACACTCAACAATTTGGAGTCTCAAATGTTCAAAGTTTAGGTATTGGTTCATCATCCTCATCTTCATCTACAACTTCTTCGAACAGCCGTTACGAGAATCAAAAGCGGCGAGATTGGAACACATTTTGCCAATACCTGAAAAATCACAGGCCCCCACTTGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGCTATTTGGACCAATTTGGCAAAACCAAAGTCCATGTCCCTATGTGCCCTTTCTACGGGCACCCTAACCCTCCAGCCCCATGTCCTTGCCCTCTACGTCAAGCTTGGGGCAGCCTCGATGCCCTTATCGGCCGCCTTCGGGCAGCCTTCGAGGAGAACGGAGGGCTGCCCGAAGCGAACCCTTTTGGCGCCCGAGCTGTTCGGCTTTATCTTCGGGAGGTTCGCGATTTGCAGTCAAAGGCAAGAGGAATTAGCTATGAGAAGAAGAAACGAAAGCGCCCTCAACAACAACAACAACAACAAATTCCTCAACCTCCAATTGGACCTTGAGAAATCCCATAATAAAAATTCAAACTTTATAATCAAGAAGCCAATTTAGAGGGTACCCTTCTTATTTAATCTTATTTTCCTTCTAATTTATGCTCTTAATTATCTTCATCATGCATGCATTTTCAATCAATTCTAGGGTTAGTGGTTAAATTTCCTTTGATGGGTTTTGAGACATTTTGTATGATTTTAAGGTGTAACCCATTTGAATTGCTGATTTAATCATCTATATTTTCA

mRNA sequence

CTTTTTGTCCACACTCTCCCTTCAATATTTAGTTCCACACACACCTTCCATTGGAGAAGAAAAAAGGAAACCCTAGTTCCAAAAAAAAAAACTACCAACTTTCCTTCTTCAAATTGAACCAAAAAAATCACAAATTTTTGATCCCCAAATGGATTCAATCACTGAATTTGAAAGCTTCAACACTCAACAATTTGGAGTCTCAAATGTTCAAAGTTTAGGTATTGGTTCATCATCCTCATCTTCATCTACAACTTCTTCGAACAGCCGTTACGAGAATCAAAAGCGGCGAGATTGGAACACATTTTGCCAATACCTGAAAAATCACAGGCCCCCACTTGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGCTATTTGGACCAATTTGGCAAAACCAAAGTCCATGTCCCTATGTGCCCTTTCTACGGGCACCCTAACCCTCCAGCCCCATGTCCTTGCCCTCTACGTCAAGCTTGGGGCAGCCTCGATGCCCTTATCGGCCGCCTTCGGGCAGCCTTCGAGGAGAACGGAGGGCTGCCCGAAGCGAACCCTTTTGGCGCCCGAGCTGTTCGGCTTTATCTTCGGGAGGTTCGCGATTTGCAGTCAAAGGCAAGAGGAATTAGCTATGAGAAGAAGAAACGAAAGCGCCCTCAACAACAACAACAACAACAAATTCCTCAACCTCCAATTGGACCTTGAGAAATCCCATAATAAAAATTCAAACTTTATAATCAAGAAGCCAATTTAGAGGGTACCCTTCTTATTTAATCTTATTTTCCTTCTAATTTATGCTCTTAATTATCTTCATCATGCATGCATTTTCAATCAATTCTAGGGTTAGTGGTTAAATTTCCTTTGATGGGTTTTGAGACATTTTGTATGATTTTAAGGTGTAACCCATTTGAATTGCTGATTTAATCATCTATATTTTCA

Coding sequence (CDS)

ATGGATTCAATCACTGAATTTGAAAGCTTCAACACTCAACAATTTGGAGTCTCAAATGTTCAAAGTTTAGGTATTGGTTCATCATCCTCATCTTCATCTACAACTTCTTCGAACAGCCGTTACGAGAATCAAAAGCGGCGAGATTGGAACACATTTTGCCAATACCTGAAAAATCACAGGCCCCCACTTGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGCTATTTGGACCAATTTGGCAAAACCAAAGTCCATGTCCCTATGTGCCCTTTCTACGGGCACCCTAACCCTCCAGCCCCATGTCCTTGCCCTCTACGTCAAGCTTGGGGCAGCCTCGATGCCCTTATCGGCCGCCTTCGGGCAGCCTTCGAGGAGAACGGAGGGCTGCCCGAAGCGAACCCTTTTGGCGCCCGAGCTGTTCGGCTTTATCTTCGGGAGGTTCGCGATTTGCAGTCAAAGGCAAGAGGAATTAGCTATGAGAAGAAGAAACGAAAGCGCCCTCAACAACAACAACAACAACAAATTCCTCAACCTCCAATTGGACCTTGA

Protein sequence

MDSITEFESFNTQQFGVSNVQSLGIGSSSSSSSTTSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQQQQIPQPPIGP

Homology

[Close]

BLAST of Sed0015423 vs. NCBI nr
Match: XP_022963938.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_022963939.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_022967435.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_022967436.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_022967437.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_023511397.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo] >KAG6571527.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327.0 bits (837), Expect = 1.0e-85
Identity = 169/188 (89.89%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 1   MDS-ITEFESF-NTQQFGVSNVQSLGIGSSSSSSSTTSSNSRYENQKRRDWNTFCQYLKN 60
           MDS I EFE   NTQQFGVSN+Q+LGIGSSSS     SSNSRYENQKRRDWNTFCQYLKN
Sbjct: 1   MDSIIPEFEGLNNTQQFGVSNLQNLGIGSSSS-----SSNSRYENQKRRDWNTFCQYLKN 60

Query: 61  HRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLDA 120
           HRPPLALSRCSGAHVLEFLRYLDQFGKTKVH P+CPFYGHPNPPAPCPCPLRQAWGSLDA
Sbjct: 61  HRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDA 120

Query: 121 LIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQ-QQQ 180
           LIGRLRAAFEENGG+PEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQ QQQ
Sbjct: 121 LIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQRQQQ 180

Query: 181 QIPQPPIG 186
           Q+PQP  G
Sbjct: 181 QLPQPSNG 183

[Close]

BLAST of Sed0015423 vs. NCBI nr
Match: XP_022930979.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >KAG7036314.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.6 bits (828), Expect = 1.2e-84
Identity = 163/188 (86.70%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MDSITEFESFNTQQFGVSNVQSLGIG---SSSSSSSTTSSNSRYENQKRRDWNTFCQYLK 60
           MDSITEFE  N QQFG S+V +LG G   SSSSSSS++SSNSRYENQKRRDWNTFCQYLK
Sbjct: 1   MDSITEFEGLNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60

Query: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVH P+CPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQQQ 180
           ALIGRLRAAFEENGG+PEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP    QQ
Sbjct: 121 ALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP----QQ 180

Query: 181 QIPQPPIG 186
           QI  PP G
Sbjct: 181 QILPPPTG 184

[Close]

BLAST of Sed0015423 vs. NCBI nr
Match: XP_023532600.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.2 bits (827), Expect = 1.5e-84
Identity = 163/186 (87.63%), Postives = 171/186 (91.94%), Query Frame = 0


Query: 1   MDSITEFESFNTQQFGVSNVQSLGIG-SSSSSSSTTSSNSRYENQKRRDWNTFCQYLKNH 60
           MDSITEFE  N QQFG S+V +LG G SSSSSSS++SSNSRYENQKRRDWNTFCQYLKNH
Sbjct: 1   MDSITEFEGLNAQQFGGSSVPNLGGGSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNH 60

Query: 61  RPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLDAL 120
           RPPLALSRCSGAHVLEFLRYLDQFGKTKVH P+CPFYGHPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  RPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQQQQI 180
           IGRLRAAFEENGG+PEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP    QQQI
Sbjct: 121 IGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP----QQQI 180

Query: 181 PQPPIG 186
             PP G
Sbjct: 181 LPPPTG 182

[Close]

BLAST of Sed0015423 vs. NCBI nr
Match: KAG6606372.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 322.0 bits (824), Expect = 3.4e-84
Identity = 163/192 (84.90%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDSITEFESFNTQQFGVSNVQSLGIG-------SSSSSSSTTSSNSRYENQKRRDWNTFC 60
           MDSITEFE  N QQFG S+V +LG G       SSSSSSS++SSNSRYENQKRRDWNTFC
Sbjct: 1   MDSITEFEGLNAQQFGASSVPNLGGGSSSSSSSSSSSSSSSSSSNSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVH P+CPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGG+PEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP  
Sbjct: 121 GSLDALIGRLRAAFEENGGIPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP-- 180

Query: 181 QQQQQIPQPPIG 186
             QQQI  PP G
Sbjct: 181 --QQQILPPPTG 188

[Close]

BLAST of Sed0015423 vs. NCBI nr
Match: XP_022995826.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 161/188 (85.64%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MDSITEFESFNTQQFGVSNVQSLGIG---SSSSSSSTTSSNSRYENQKRRDWNTFCQYLK 60
           MDSITEFE  N QQFG S+V +LG G   SSSSSSS++SSNSRYENQKRRDWNTFCQYLK
Sbjct: 1   MDSITEFEGLNAQQFGGSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60

Query: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL LSRCSGAHVLEFLRYLDQFGKTKVH P+CPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQQQ 180
           +LIGRLRAAFEENGG+PEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP    QQ
Sbjct: 121 SLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP----QQ 180

Query: 181 QIPQPPIG 186
           QI  PP G
Sbjct: 181 QILPPPTG 184

[Close]

BLAST of Sed0015423 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-70
Identity = 135/185 (72.97%), Postives = 150/185 (81.08%), Query Frame = 0


Query: 1   MDSITEFESFNTQQFGVSNVQSLGIGSS--------------SSSSSTTSSNSRYENQKR 60
           MD I +    ++   GV+N+  +   SS              SSSSS ++++SRYENQKR
Sbjct: 1   MDMIPQLMEGSSAYGGVTNLNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKR 60

Query: 61  RDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCP 120
           RDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVH  +C FYGHPNPPAPCP
Sbjct: 61  RDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCP 120

Query: 121 CPLRQAWGSLDALIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKK 172
           CPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD+QSKARG+SYEKK
Sbjct: 121 CPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKK 180

[Close]

BLAST of Sed0015423 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.4e-69
Identity = 131/160 (81.88%), Postives = 137/160 (85.62%), Query Frame = 0


Query: 27  SSSSSSSTTSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 86
           SSSS  S T+  SRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKT
Sbjct: 35  SSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKT 94

Query: 87  KVHVPMCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGLPEANPFGARAVRL 146
           KVH  +CPF+GHPNPPAPC CPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRL
Sbjct: 95  KVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRL 154

Query: 147 YLREVRDLQSKARGISYEKKKRKRPQQQQQQQIPQPPIGP 187
           YLREVRD Q+KARGISYEKKKRKRP        P PP  P
Sbjct: 155 YLREVRDSQAKARGISYEKKKRKRPPP------PLPPAQP 188

[Close]

BLAST of Sed0015423 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 7.8e-68
Identity = 127/168 (75.60%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 24  GIGSSSSSSSTTSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQF 83
           G G   S SS++ S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQF
Sbjct: 64  GGGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQF 123

Query: 84  GKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGLPEANPFGARA 143
           GKTKVH P+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARA
Sbjct: 124 GKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARA 183

Query: 144 VRLYLREVRDLQSKARGISYEKKKRKRPQQ------QQQQQIPQPPIG 186
           VRLYLREVR+ Q++ARGISYEKKKRK+P           +  P PP G
Sbjct: 184 VRLYLREVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPGG 231

[Close]

BLAST of Sed0015423 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 7.8e-68
Identity = 127/168 (75.60%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 24  GIGSSSSSSSTTSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQF 83
           G G   S SS++ S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQF
Sbjct: 64  GGGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQF 123

Query: 84  GKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGLPEANPFGARA 143
           GKTKVH P+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARA
Sbjct: 124 GKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARA 183

Query: 144 VRLYLREVRDLQSKARGISYEKKKRKRPQQ------QQQQQIPQPPIG 186
           VRLYLREVR+ Q++ARGISYEKKKRK+P           +  P PP G
Sbjct: 184 VRLYLREVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPGG 231

[Close]

BLAST of Sed0015423 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.1e-67
Identity = 126/160 (78.75%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 24  GIGSSSSSSSTT------SSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFL 83
           G GSSSS+SS +       S SRYE QKRRDWNTF QYL+NHRPPL+L++CSGAHVLEFL
Sbjct: 19  GGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFL 78

Query: 84  RYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGLPEAN 143
           RYLDQFGKTKVH   CPF+GHP+PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG PE+N
Sbjct: 79  RYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESN 138

Query: 144 PFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQQQ 178
           PF ARAVRLYLREVR+ Q++ARG+SYEKKKRK+PQQQQ Q
Sbjct: 139 PFAARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQLQ 178

[Close]

BLAST of Sed0015423 vs. ExPASy TrEMBL
Match: A0A6J1HQU3 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=LOC111466975 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.0e-86
Identity = 169/188 (89.89%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 1   MDS-ITEFESF-NTQQFGVSNVQSLGIGSSSSSSSTTSSNSRYENQKRRDWNTFCQYLKN 60
           MDS I EFE   NTQQFGVSN+Q+LGIGSSSS     SSNSRYENQKRRDWNTFCQYLKN
Sbjct: 1   MDSIIPEFEGLNNTQQFGVSNLQNLGIGSSSS-----SSNSRYENQKRRDWNTFCQYLKN 60

Query: 61  HRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLDA 120
           HRPPLALSRCSGAHVLEFLRYLDQFGKTKVH P+CPFYGHPNPPAPCPCPLRQAWGSLDA
Sbjct: 61  HRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDA 120

Query: 121 LIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQ-QQQ 180
           LIGRLRAAFEENGG+PEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQ QQQ
Sbjct: 121 LIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQRQQQ 180

Query: 181 QIPQPPIG 186
           Q+PQP  G
Sbjct: 181 QLPQPSNG 183

[Close]

BLAST of Sed0015423 vs. ExPASy TrEMBL
Match: A0A6J1HLN0 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111464089 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.0e-86
Identity = 169/188 (89.89%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 1   MDS-ITEFESF-NTQQFGVSNVQSLGIGSSSSSSSTTSSNSRYENQKRRDWNTFCQYLKN 60
           MDS I EFE   NTQQFGVSN+Q+LGIGSSSS     SSNSRYENQKRRDWNTFCQYLKN
Sbjct: 1   MDSIIPEFEGLNNTQQFGVSNLQNLGIGSSSS-----SSNSRYENQKRRDWNTFCQYLKN 60

Query: 61  HRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLDA 120
           HRPPLALSRCSGAHVLEFLRYLDQFGKTKVH P+CPFYGHPNPPAPCPCPLRQAWGSLDA
Sbjct: 61  HRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDA 120

Query: 121 LIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQ-QQQ 180
           LIGRLRAAFEENGG+PEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQ QQQ
Sbjct: 121 LIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQRQQQ 180

Query: 181 QIPQPPIG 186
           Q+PQP  G
Sbjct: 181 QLPQPSNG 183

[Close]

BLAST of Sed0015423 vs. ExPASy TrEMBL
Match: A0A6J1ET10 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437310 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.6e-85
Identity = 163/188 (86.70%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MDSITEFESFNTQQFGVSNVQSLGIG---SSSSSSSTTSSNSRYENQKRRDWNTFCQYLK 60
           MDSITEFE  N QQFG S+V +LG G   SSSSSSS++SSNSRYENQKRRDWNTFCQYLK
Sbjct: 1   MDSITEFEGLNAQQFGASSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60

Query: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVH P+CPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQQQ 180
           ALIGRLRAAFEENGG+PEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP    QQ
Sbjct: 121 ALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP----QQ 180

Query: 181 QIPQPPIG 186
           QI  PP G
Sbjct: 181 QILPPPTG 184

[Close]

BLAST of Sed0015423 vs. ExPASy TrEMBL
Match: A0A6J1K2Z8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=LOC111491244 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.1e-84
Identity = 161/188 (85.64%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MDSITEFESFNTQQFGVSNVQSLGIG---SSSSSSSTTSSNSRYENQKRRDWNTFCQYLK 60
           MDSITEFE  N QQFG S+V +LG G   SSSSSSS++SSNSRYENQKRRDWNTFCQYLK
Sbjct: 1   MDSITEFEGLNAQQFGGSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60

Query: 61  NHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL LSRCSGAHVLEFLRYLDQFGKTKVH P+CPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQQQ 180
           +LIGRLRAAFEENGG+PEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP    QQ
Sbjct: 121 SLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP----QQ 180

Query: 181 QIPQPPIG 186
           QI  PP G
Sbjct: 181 QILPPPTG 184

[Close]

BLAST of Sed0015423 vs. ExPASy TrEMBL
Match: A0A0A0LB62 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.6e-79
Identity = 160/186 (86.02%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 1   MDSI-TEFESF---NTQQFGV----SNVQSLGIGSSSSSSSTTSSNSRYENQKRRDWNTF 60
           MDSI +EFES    N Q FGV    + +Q+L +GSSSSSSS +SS+SRYENQKRRDWNTF
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSS-SSSSSRYENQKRRDWNTF 60

Query: 61  CQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCPCPLRQA 120
           CQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVH P+CPFYGHPNPPAPCPCPLRQA
Sbjct: 61  CQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQ 179
           WGSLDALIGRLRAAFEENGG+PEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQ
Sbjct: 121 WGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQ 180

[Close]

BLAST of Sed0015423 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 267.3 bits (682), Expect = 9.1e-72
Identity = 135/185 (72.97%), Postives = 150/185 (81.08%), Query Frame = 0


Query: 1   MDSITEFESFNTQQFGVSNVQSLGIGSS--------------SSSSSTTSSNSRYENQKR 60
           MD I +    ++   GV+N+  +   SS              SSSSS ++++SRYENQKR
Sbjct: 1   MDMIPQLMEGSSAYGGVTNLNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKR 60

Query: 61  RDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVPMCPFYGHPNPPAPCP 120
           RDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVH  +C FYGHPNPPAPCP
Sbjct: 61  RDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCP 120

Query: 121 CPLRQAWGSLDALIGRLRAAFEENGGLPEANPFGARAVRLYLREVRDLQSKARGISYEKK 172
           CPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD+QSKARG+SYEKK
Sbjct: 121 CPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKK 180

[Close]

BLAST of Sed0015423 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 261.9 bits (668), Expect = 3.8e-70
Identity = 131/160 (81.88%), Postives = 137/160 (85.62%), Query Frame = 0


Query: 27  SSSSSSSTTSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 86
           SSSS  S T+  SRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKT
Sbjct: 35  SSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKT 94

Query: 87  KVHVPMCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGLPEANPFGARAVRL 146
           KVH  +CPF+GHPNPPAPC CPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRL
Sbjct: 95  KVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRL 154

Query: 147 YLREVRDLQSKARGISYEKKKRKRPQQQQQQQIPQPPIGP 187
           YLREVRD Q+KARGISYEKKKRKRP        P PP  P
Sbjct: 155 YLREVRDSQAKARGISYEKKKRKRPPP------PLPPAQP 188

[Close]

BLAST of Sed0015423 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 247.3 bits (630), Expect = 9.8e-66
Identity = 125/164 (76.22%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 28  SSSSSSTTSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTK 87
           +SS+  T  S+SRYENQKRRDWNTFCQYL+NHRPPL+L  CSGAHVLEFLRYLDQFGKTK
Sbjct: 13  NSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTK 72

Query: 88  VHVPMCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGLPEANPFGARAVRLY 147
           VH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+
Sbjct: 73  VHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLF 132

Query: 148 LREVRDLQSKARGISYEKKK----RKRPQQ------QQQQQIPQ 182
           LREVRD Q+KARG+SYEKK+    R++PQ       QQQQQ PQ
Sbjct: 133 LREVRDFQAKARGVSYEKKRKRVNRQKPQTQPPLQLQQQQQQPQ 176

[Close]

BLAST of Sed0015423 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 241.1 bits (614), Expect = 7.0e-64
Identity = 111/140 (79.29%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 32  SSTTSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHVP 91
           SS  ++ SRYE+QKRRDWNTF QYLKNH+PPLALSRCSGAHV+EFL+YLDQFGKTKVHV 
Sbjct: 23  SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA 82

Query: 92  MCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGLPEANPFGARAVRLYLREV 151
            CP++GH  PP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF ARAVR+YLREV
Sbjct: 83  ACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREV 142

Query: 152 RDLQSKARGISYEKKKRKRP 172
           R+ Q+KARGI YEKKKRKRP
Sbjct: 143 RESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of Sed0015423 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 237.7 bits (605), Expect = 7.8e-63
Identity = 114/157 (72.61%), Postives = 135/157 (85.99%), Query Frame = 0


Query: 30  SSSSTTSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVH 89
           SS S+  S+SRYENQKRRDWNTFCQYL+NH PPL+L+ CSGAHVL+FLRYLDQFGKTKVH
Sbjct: 23  SSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVH 82

Query: 90  VPMCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGLPEANPFGARAVRLYLR 149
              C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE +PFG+R+VR++LR
Sbjct: 83  HQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLR 142

Query: 150 EVRDLQSKARGISYEKKKRKRPQQQ--QQQQIPQPPI 185
           EVRD Q+K+RG+SYEKK+++   +Q  Q Q   QPP+
Sbjct: 143 EVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPL 179

The following BLAST results are available for this feature:

BLAST of Sed0015423 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963938.1	1.0e-85	89.89	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_0229639...	[more]
XP_022930979.1	1.2e-84	86.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >KAG7036314...	[more]
XP_023532600.1	1.5e-84	87.63	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo]	[more]
KAG6606372.1	3.4e-84	84.90	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3, partial [Cucurbita argyrosperma subs...	[more]
XP_022995826.1	1.7e-83	85.64	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima]	[more]

BLAST of Sed0015423 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82268	1.3e-70	72.97	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	5.4e-69	81.88	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	7.8e-68	75.60	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	7.8e-68	75.60	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
A2XVI8	5.1e-67	78.75	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]

BLAST of Sed0015423 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQU3	5.0e-86	89.89	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HLN0	5.0e-86	89.89	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1ET10	5.6e-85	86.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K2Z8	8.1e-84	85.64	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LB62	1.6e-79	86.02	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=3 S...	[more]

BLAST of Sed0015423 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31160.1	9.1e-72	72.97	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.8e-70	81.88	Protein of unknown function (DUF640)	[more]
AT5G28490.1	9.8e-66	76.22	Protein of unknown function (DUF640)	[more]
AT1G07090.1	7.0e-64	79.29	Protein of unknown function (DUF640)	[more]
AT3G04510.1	7.8e-63	72.61	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 30..153 e-value: 7.1E-67 score: 223.3
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 40..167 score: 84.819687
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..186
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 18..179
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 18..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015423.1	Sed0015423.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus