Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAAAAATGAGATTGTTAGAAGTACAACATGGAAGCCGCCAACTGGGTTAAACTATAAAGTAAATTCTAATGTTGCGTTTAATTTTGCAGGTAAAAAATTTAGGATGGGAGCAGTTGTTTGGAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACTGATGCCGAAATTGTGGTTAAAAAACTTGCAAACAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTGCAAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGCAGCTGCTTATGCTTGTTACGAAAGAGACTAA
mRNA sequence
ATGCCAAAAAATGAGATTGTTAGAAGTACAACATGGAAGCCGCCAACTGGGTTAAACTATAAAGTAAATTCTAATGTTGCGTTTAATTTTGCAGGTAAAAAATTTAGGATGGGAGCAGTTGTTTGGAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACTGATGCCGAAATTGTGGTTAAAAAACTTGCAAACAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTGCAAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGCAGCTGCTTATGCTTGTTACGAAAGAGACTAA
Coding sequence (CDS)
ATGCCAAAAAATGAGATTGTTAGAAGTACAACATGGAAGCCGCCAACTGGGTTAAACTATAAAGTAAATTCTAATGTTGCGTTTAATTTTGCAGGTAAAAAATTTAGGATGGGAGCAGTTGTTTGGAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACTGATGCCGAAATTGTGGTTAAAAAACTTGCAAACAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTGCAAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGCAGCTGCTTATGCTTGTTACGAAAGAGACTAA
Protein sequence
MPKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD
Homology
BLAST of Sed0015376 vs. NCBI nr
Match:
XP_030934661.1 (uncharacterized protein LOC115960098 [Quercus lobata])
HSP 1 Score: 107.8 bits (268), Expect = 9.0e-20
Identity = 59/157 (37.58%), Postives = 90/157 (57.32%), Query Frame = 0
Query: 10 TTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALA 69
T W PP KVN + A +GA++ ND G VMAA + I VE+ E LA
Sbjct: 999 TKWLPPPPNWVKVNFDGATFGDSSSAGLGAIIRNDMGLVMAAFTQHIPLPTSVEMVEVLA 1058
Query: 70 IRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSW 129
R + +A +LGF ++ VE D+EI++K L++N + S G +L DI+ ++++L +F+
Sbjct: 1059 ARGALCFAKDLGFNKVVVEGDSEIIIKALSSNGLSASSFGHILQDIKSVSSSLGGVLFNH 1118
Query: 130 CDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACY 167
R+ N VAHGLAR A + +F+ W+ED+P Y
Sbjct: 1119 TRRQGNRVAHGLARMACNFVNFQSWMEDVPPGVIDVY 1155
BLAST of Sed0015376 vs. NCBI nr
Match:
XP_023910597.1 (uncharacterized protein LOC112022257 [Quercus suber])
HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 57/154 (37.01%), Postives = 85/154 (55.19%), Query Frame = 0
Query: 6 IVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVG 65
+ R+ W PP YKVN + A+ +K +G VV N+ G+VM ++A+ I VEV
Sbjct: 1 MARTQRWVPPAEGTYKVNYDGAYFVDEEKAGIGVVVRNELGQVMGSLAEKIDMPSTVEVL 60
Query: 66 EALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECC 125
+ALA R + + ELG R E D+E+VVK L + D+S +G ++ D + L + + C
Sbjct: 61 KALAARRAMLFMEELGLRHAVFEGDSELVVKALVGHCPDQSSIGHIIKDYKSLRSLFQTC 120
Query: 126 IFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP 160
FS R+ N V H L RRA +Y W+E +P
Sbjct: 121 SFSHVRRQGNGVTHALTRRARQYFPLTVWMESVP 154
BLAST of Sed0015376 vs. NCBI nr
Match:
XP_023887146.1 (uncharacterized protein LOC111999255 [Quercus suber])
HSP 1 Score: 103.6 bits (257), Expect = 1.7e-18
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 0
Query: 10 TTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALA 69
T W PP K+N + A +GA++ ND G VMAA I VE+ E LA
Sbjct: 82 TKWLPPPSNWVKINFDGATFSDLSSAGLGAIIRNDLGPVMAAFTHLIPLPTSVEMVEVLA 141
Query: 70 IRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSW 129
R + +A ELGF + VE D+EIV+K L+ N S +G ++ D++ LA++L F+
Sbjct: 142 ARSALCFAKELGFNNIIVEGDSEIVIKALSTNGPSFSSIGHIVKDVKVLASSLGNVSFNH 201
Query: 130 CDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACY 167
R+ N VAHGLAR A + F+ W+ED+P A Y
Sbjct: 202 TRRQGNRVAHGLARLACNFIHFQSWMEDVPPAVEGVY 238
BLAST of Sed0015376 vs. NCBI nr
Match:
XP_023888977.1 (uncharacterized protein LOC112001046 [Quercus suber])
HSP 1 Score: 103.2 bits (256), Expect = 2.2e-18
Identity = 57/144 (39.58%), Postives = 82/144 (56.94%), Query Frame = 0
Query: 2 PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQ 61
P+ +V++ W PP YKVN + A+ +K R+G VV ND G+VM ++A+ I
Sbjct: 49 PERNLVQTQRWLPPVEGMYKVNYDGAYFVDEEKARIGVVVRNDLGQVMGSLAEKIDMPTT 108
Query: 62 VEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATN 121
VEV EA+ R + + ELG R E D+E+VVK L + DRS +G ++ D + L +
Sbjct: 109 VEVLEAMVARRAMLFMEELGLRHTVFEGDSELVVKALVGHCPDRSSIGHIIKDYKSLRSL 168
Query: 122 LECCIFSWCDRRANSVAHGLARRA 146
+ C FS R+ N VAH L RRA
Sbjct: 169 FQTCSFSHVRRQGNGVAHALGRRA 192
BLAST of Sed0015376 vs. NCBI nr
Match:
XP_023927486.1 (uncharacterized protein LOC112038880 [Quercus suber])
HSP 1 Score: 101.7 bits (252), Expect = 6.5e-18
Identity = 59/162 (36.42%), Postives = 90/162 (55.56%), Query Frame = 0
Query: 8 RSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEA 67
R+ W+PPT KVN + A +G ++ N++G VMAA+++ I VE+ E
Sbjct: 1174 RAVKWRPPTAPCVKVNFDGAVFSQDGLAGIGVIIRNEQGLVMAALSQQIPSPTSVEMVEV 1233
Query: 68 LAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIF 127
LA R + +A ELGF ++E+E D+E V K + + +DRS +G VL DI+ L ++
Sbjct: 1234 LAARQAVLFAKELGFDKVELEGDSESVTKAILGDYMDRSYIGHVLQDIKFLFSSFSVISV 1293
Query: 128 SWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD 170
R N VAH LARRA+ F W+E +P+ + Y+ D
Sbjct: 1294 KHIYREGNCVAHKLARRAVN-SPFLVWMESVPSDIFDVYQHD 1334
BLAST of Sed0015376 vs. ExPASy TrEMBL
Match:
A0A2N9FT78 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21808 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17
Identity = 54/151 (35.76%), Postives = 87/151 (57.62%), Query Frame = 0
Query: 9 STTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEAL 68
ST+W+PP YKVN + A K +G VV + G V+A +++ + E+ EA
Sbjct: 309 STSWRPPISHQYKVNFDGAIFQEAKMGGIGVVVRDQAGMVIATLSQRVITSPSAELIEAR 368
Query: 69 AIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFS 128
A R IQ+AME+G ++ E D+E ++++L+N + + G ++ D + L + + +F+
Sbjct: 369 AARRAIQFAMEIGILDVQFEGDSETIIRELSNQEVMHNASGLIIEDAKALLHHFQRYMFT 428
Query: 129 WCDRRANSVAHGLARRALEYEDFRCWIEDLP 160
R NSVAH LARRAL+ +F W+ED P
Sbjct: 429 HTRRSGNSVAHALARRALDIPNFSVWMEDAP 459
BLAST of Sed0015376 vs. ExPASy TrEMBL
Match:
A0A2N9FY90 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19997 PE=4 SV=1)
HSP 1 Score: 98.2 bits (243), Expect = 3.5e-17
Identity = 56/168 (33.33%), Postives = 92/168 (54.76%), Query Frame = 0
Query: 4 NEIVRSTT--WKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQ 63
N ++ T W PP KVN + A K +G ++ N+ G M A+++ I
Sbjct: 347 NRVIPKTAPPWAPPPVGCMKVNYDGAVFSEANKGGIGVIIRNEMGLPMIALSQKIPYPGS 406
Query: 64 VEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATN 123
V EALA+R + A+E+GF+ + +E D+E+VV++ + S G ++ D+Q+LA
Sbjct: 407 SAVMEALALRRALLLAIEMGFQSVVMEGDSEMVVREASMWGAFLSSYGHIIADVQQLAAQ 466
Query: 124 LECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD 170
++ C+FS R+AN VAH LARRA D+ W+E +P ++ + D
Sbjct: 467 MDVCVFSHTRRQANQVAHALARRACNVLDYETWMESVPPELWSVLQND 514
BLAST of Sed0015376 vs. ExPASy TrEMBL
Match:
A0A2N9EMZ0 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8088 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 58/158 (36.71%), Postives = 88/158 (55.70%), Query Frame = 0
Query: 2 PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQ 61
PK +STTWKPP YKVN + A + +G ++ N RGEVM +++ I
Sbjct: 774 PKPNHTKSTTWKPPEEGRYKVNYDGAVFSERNEAGVGVIIRNYRGEVMGSLSHRIPYPHS 833
Query: 62 VEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATN 121
VE EA A IQ+A +LGF +++E D++I+V+ L + G V+ DI++ A N
Sbjct: 834 VEAVEASAASCAIQFAKDLGFMLIDLEGDSKIIVEALLLKAPCTTIYGNVIEDIKQSAQN 893
Query: 122 LECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP 160
L+ F +R N++AH LA+RA + F W+E +P
Sbjct: 894 LQSVHFLHINREGNAMAHLLAKRARLNKPFEVWMESVP 931
BLAST of Sed0015376 vs. ExPASy TrEMBL
Match:
A0A2N9HYE3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44563 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 58/158 (36.71%), Postives = 88/158 (55.70%), Query Frame = 0
Query: 2 PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQ 61
PK +STTWKPP YKVN + A + +G ++ N RGEVM +++ I
Sbjct: 1655 PKPNHTKSTTWKPPEEGRYKVNYDGAVFSERNEAGVGVIIRNYRGEVMGSLSHRIPYPHS 1714
Query: 62 VEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATN 121
VE EA A IQ+A +LGF +++E D++I+V+ L + G V+ DI++ A N
Sbjct: 1715 VEAVEASAASCAIQFAKDLGFMLIDLEGDSKIIVEALLLKAPCTTIYGNVIEDIKQSAQN 1774
Query: 122 LECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP 160
L+ F +R N++AH LA+RA + F W+E +P
Sbjct: 1775 LQSVHFLHINREGNAMAHLLAKRARLNKPFEVWMESVP 1812
BLAST of Sed0015376 vs. ExPASy TrEMBL
Match:
A0A2N9GBQ2 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24553 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 54/151 (35.76%), Postives = 85/151 (56.29%), Query Frame = 0
Query: 9 STTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEAL 68
ST W+PP YKVN + A K +G VV + G V+A +++ + E+ EA
Sbjct: 64 STPWRPPISHQYKVNFDGAIFQEAKMGGIGVVVRDQAGMVIATLSQRVITSPSAELIEAR 123
Query: 69 AIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFS 128
A R IQ+AME+G ++ E D+E ++++L+N + + G ++ D + L + +F+
Sbjct: 124 AARRAIQFAMEIGILDVQFEGDSETIIRELSNQEVMHNASGLIIEDAKALLHHFRRHLFT 183
Query: 129 WCDRRANSVAHGLARRALEYEDFRCWIEDLP 160
R NSVAH LARRAL+ +F W+ED P
Sbjct: 184 HTRRSGNSVAHALARRALDIPNFSVWMEDAP 214
BLAST of Sed0015376 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 52.0 bits (123), Expect = 5.5e-07
Identity = 37/151 (24.50%), Postives = 77/151 (50.99%), Query Frame = 0
Query: 3 KNEIVRST--TWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVL 62
K ++ RS+ W+PP K N++ +N ++ +G V+ N++GEV A+ + ++
Sbjct: 409 KPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLK 468
Query: 63 QVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELAT 122
V E A+R + + + E+D++++++ L N+ I S L + D+Q L +
Sbjct: 469 SVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPS-LKPTIQDLQRLLS 528
Query: 123 NLECCIFSWCDRRANSVAHGLARRALEYEDF 152
F + R N++A +AR +L + ++
Sbjct: 529 QFTEVKFVFIPREGNTLAERVARESLSFLNY 558
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2N9FT78 | 1.6e-17 | 35.76 | RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21808 ... | [more] |
A0A2N9FY90 | 3.5e-17 | 33.33 | RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19997 ... | [more] |
A0A2N9EMZ0 | 4.5e-17 | 36.71 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A2N9HYE3 | 4.5e-17 | 36.71 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A2N9GBQ2 | 4.5e-17 | 35.76 | RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24553 ... | [more] |
Match Name | E-value | Identity | Description | |
AT4G29090.1 | 5.5e-07 | 24.50 | Ribonuclease H-like superfamily protein | [more] |