Sed0015376 (gene) Chayote v1

Overview
NameSed0015376
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
LocationLG05: 32015085 .. 32015594 (+)
RNA-Seq ExpressionSed0015376
SyntenySed0015376
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAAAAATGAGATTGTTAGAAGTACAACATGGAAGCCGCCAACTGGGTTAAACTATAAAGTAAATTCTAATGTTGCGTTTAATTTTGCAGGTAAAAAATTTAGGATGGGAGCAGTTGTTTGGAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACTGATGCCGAAATTGTGGTTAAAAAACTTGCAAACAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTGCAAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGCAGCTGCTTATGCTTGTTACGAAAGAGACTAA

mRNA sequence

ATGCCAAAAAATGAGATTGTTAGAAGTACAACATGGAAGCCGCCAACTGGGTTAAACTATAAAGTAAATTCTAATGTTGCGTTTAATTTTGCAGGTAAAAAATTTAGGATGGGAGCAGTTGTTTGGAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACTGATGCCGAAATTGTGGTTAAAAAACTTGCAAACAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTGCAAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGCAGCTGCTTATGCTTGTTACGAAAGAGACTAA

Coding sequence (CDS)

ATGCCAAAAAATGAGATTGTTAGAAGTACAACATGGAAGCCGCCAACTGGGTTAAACTATAAAGTAAATTCTAATGTTGCGTTTAATTTTGCAGGTAAAAAATTTAGGATGGGAGCAGTTGTTTGGAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACTGATGCCGAAATTGTGGTTAAAAAACTTGCAAACAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTGCAAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGCAGCTGCTTATGCTTGTTACGAAAGAGACTAA

Protein sequence

MPKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD
Homology
BLAST of Sed0015376 vs. NCBI nr
Match: XP_030934661.1 (uncharacterized protein LOC115960098 [Quercus lobata])

HSP 1 Score: 107.8 bits (268), Expect = 9.0e-20
Identity = 59/157 (37.58%), Postives = 90/157 (57.32%), Query Frame = 0

Query: 10   TTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALA 69
            T W PP     KVN + A         +GA++ ND G VMAA  + I     VE+ E LA
Sbjct: 999  TKWLPPPPNWVKVNFDGATFGDSSSAGLGAIIRNDMGLVMAAFTQHIPLPTSVEMVEVLA 1058

Query: 70   IRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSW 129
             R  + +A +LGF ++ VE D+EI++K L++N +  S  G +L DI+ ++++L   +F+ 
Sbjct: 1059 ARGALCFAKDLGFNKVVVEGDSEIIIKALSSNGLSASSFGHILQDIKSVSSSLGGVLFNH 1118

Query: 130  CDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACY 167
              R+ N VAHGLAR A  + +F+ W+ED+P      Y
Sbjct: 1119 TRRQGNRVAHGLARMACNFVNFQSWMEDVPPGVIDVY 1155

BLAST of Sed0015376 vs. NCBI nr
Match: XP_023910597.1 (uncharacterized protein LOC112022257 [Quercus suber])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 57/154 (37.01%), Postives = 85/154 (55.19%), Query Frame = 0

Query: 6   IVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVG 65
           + R+  W PP    YKVN + A+    +K  +G VV N+ G+VM ++A+ I     VEV 
Sbjct: 1   MARTQRWVPPAEGTYKVNYDGAYFVDEEKAGIGVVVRNELGQVMGSLAEKIDMPSTVEVL 60

Query: 66  EALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECC 125
           +ALA R  + +  ELG R    E D+E+VVK L  +  D+S +G ++ D + L +  + C
Sbjct: 61  KALAARRAMLFMEELGLRHAVFEGDSELVVKALVGHCPDQSSIGHIIKDYKSLRSLFQTC 120

Query: 126 IFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP 160
            FS   R+ N V H L RRA +Y     W+E +P
Sbjct: 121 SFSHVRRQGNGVTHALTRRARQYFPLTVWMESVP 154

BLAST of Sed0015376 vs. NCBI nr
Match: XP_023887146.1 (uncharacterized protein LOC111999255 [Quercus suber])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-18
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 0

Query: 10  TTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEALA 69
           T W PP     K+N + A         +GA++ ND G VMAA    I     VE+ E LA
Sbjct: 82  TKWLPPPSNWVKINFDGATFSDLSSAGLGAIIRNDLGPVMAAFTHLIPLPTSVEMVEVLA 141

Query: 70  IRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSW 129
            R  + +A ELGF  + VE D+EIV+K L+ N    S +G ++ D++ LA++L    F+ 
Sbjct: 142 ARSALCFAKELGFNNIIVEGDSEIVIKALSTNGPSFSSIGHIVKDVKVLASSLGNVSFNH 201

Query: 130 CDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACY 167
             R+ N VAHGLAR A  +  F+ W+ED+P A    Y
Sbjct: 202 TRRQGNRVAHGLARLACNFIHFQSWMEDVPPAVEGVY 238

BLAST of Sed0015376 vs. NCBI nr
Match: XP_023888977.1 (uncharacterized protein LOC112001046 [Quercus suber])

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-18
Identity = 57/144 (39.58%), Postives = 82/144 (56.94%), Query Frame = 0

Query: 2   PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQ 61
           P+  +V++  W PP    YKVN + A+    +K R+G VV ND G+VM ++A+ I     
Sbjct: 49  PERNLVQTQRWLPPVEGMYKVNYDGAYFVDEEKARIGVVVRNDLGQVMGSLAEKIDMPTT 108

Query: 62  VEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATN 121
           VEV EA+  R  + +  ELG R    E D+E+VVK L  +  DRS +G ++ D + L + 
Sbjct: 109 VEVLEAMVARRAMLFMEELGLRHTVFEGDSELVVKALVGHCPDRSSIGHIIKDYKSLRSL 168

Query: 122 LECCIFSWCDRRANSVAHGLARRA 146
            + C FS   R+ N VAH L RRA
Sbjct: 169 FQTCSFSHVRRQGNGVAHALGRRA 192

BLAST of Sed0015376 vs. NCBI nr
Match: XP_023927486.1 (uncharacterized protein LOC112038880 [Quercus suber])

HSP 1 Score: 101.7 bits (252), Expect = 6.5e-18
Identity = 59/162 (36.42%), Postives = 90/162 (55.56%), Query Frame = 0

Query: 8    RSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEA 67
            R+  W+PPT    KVN + A         +G ++ N++G VMAA+++ I     VE+ E 
Sbjct: 1174 RAVKWRPPTAPCVKVNFDGAVFSQDGLAGIGVIIRNEQGLVMAALSQQIPSPTSVEMVEV 1233

Query: 68   LAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIF 127
            LA R  + +A ELGF ++E+E D+E V K +  + +DRS +G VL DI+ L ++      
Sbjct: 1234 LAARQAVLFAKELGFDKVELEGDSESVTKAILGDYMDRSYIGHVLQDIKFLFSSFSVISV 1293

Query: 128  SWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD 170
                R  N VAH LARRA+    F  W+E +P+  +  Y+ D
Sbjct: 1294 KHIYREGNCVAHKLARRAVN-SPFLVWMESVPSDIFDVYQHD 1334

BLAST of Sed0015376 vs. ExPASy TrEMBL
Match: A0A2N9FT78 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21808 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17
Identity = 54/151 (35.76%), Postives = 87/151 (57.62%), Query Frame = 0

Query: 9   STTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEAL 68
           ST+W+PP    YKVN + A     K   +G VV +  G V+A +++ +      E+ EA 
Sbjct: 309 STSWRPPISHQYKVNFDGAIFQEAKMGGIGVVVRDQAGMVIATLSQRVITSPSAELIEAR 368

Query: 69  AIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFS 128
           A R  IQ+AME+G   ++ E D+E ++++L+N  +  +  G ++ D + L  + +  +F+
Sbjct: 369 AARRAIQFAMEIGILDVQFEGDSETIIRELSNQEVMHNASGLIIEDAKALLHHFQRYMFT 428

Query: 129 WCDRRANSVAHGLARRALEYEDFRCWIEDLP 160
              R  NSVAH LARRAL+  +F  W+ED P
Sbjct: 429 HTRRSGNSVAHALARRALDIPNFSVWMEDAP 459

BLAST of Sed0015376 vs. ExPASy TrEMBL
Match: A0A2N9FY90 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19997 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.5e-17
Identity = 56/168 (33.33%), Postives = 92/168 (54.76%), Query Frame = 0

Query: 4   NEIVRSTT--WKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQ 63
           N ++  T   W PP     KVN + A      K  +G ++ N+ G  M A+++ I     
Sbjct: 347 NRVIPKTAPPWAPPPVGCMKVNYDGAVFSEANKGGIGVIIRNEMGLPMIALSQKIPYPGS 406

Query: 64  VEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATN 123
             V EALA+R  +  A+E+GF+ + +E D+E+VV++ +      S  G ++ D+Q+LA  
Sbjct: 407 SAVMEALALRRALLLAIEMGFQSVVMEGDSEMVVREASMWGAFLSSYGHIIADVQQLAAQ 466

Query: 124 LECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLPAAAYACYERD 170
           ++ C+FS   R+AN VAH LARRA    D+  W+E +P   ++  + D
Sbjct: 467 MDVCVFSHTRRQANQVAHALARRACNVLDYETWMESVPPELWSVLQND 514

BLAST of Sed0015376 vs. ExPASy TrEMBL
Match: A0A2N9EMZ0 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8088 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 58/158 (36.71%), Postives = 88/158 (55.70%), Query Frame = 0

Query: 2   PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQ 61
           PK    +STTWKPP    YKVN + A      +  +G ++ N RGEVM +++  I     
Sbjct: 774 PKPNHTKSTTWKPPEEGRYKVNYDGAVFSERNEAGVGVIIRNYRGEVMGSLSHRIPYPHS 833

Query: 62  VEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATN 121
           VE  EA A    IQ+A +LGF  +++E D++I+V+ L       +  G V+ DI++ A N
Sbjct: 834 VEAVEASAASCAIQFAKDLGFMLIDLEGDSKIIVEALLLKAPCTTIYGNVIEDIKQSAQN 893

Query: 122 LECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP 160
           L+   F   +R  N++AH LA+RA   + F  W+E +P
Sbjct: 894 LQSVHFLHINREGNAMAHLLAKRARLNKPFEVWMESVP 931

BLAST of Sed0015376 vs. ExPASy TrEMBL
Match: A0A2N9HYE3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44563 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 58/158 (36.71%), Postives = 88/158 (55.70%), Query Frame = 0

Query: 2    PKNEIVRSTTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQ 61
            PK    +STTWKPP    YKVN + A      +  +G ++ N RGEVM +++  I     
Sbjct: 1655 PKPNHTKSTTWKPPEEGRYKVNYDGAVFSERNEAGVGVIIRNYRGEVMGSLSHRIPYPHS 1714

Query: 62   VEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATN 121
            VE  EA A    IQ+A +LGF  +++E D++I+V+ L       +  G V+ DI++ A N
Sbjct: 1715 VEAVEASAASCAIQFAKDLGFMLIDLEGDSKIIVEALLLKAPCTTIYGNVIEDIKQSAQN 1774

Query: 122  LECCIFSWCDRRANSVAHGLARRALEYEDFRCWIEDLP 160
            L+   F   +R  N++AH LA+RA   + F  W+E +P
Sbjct: 1775 LQSVHFLHINREGNAMAHLLAKRARLNKPFEVWMESVP 1812

BLAST of Sed0015376 vs. ExPASy TrEMBL
Match: A0A2N9GBQ2 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24553 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 54/151 (35.76%), Postives = 85/151 (56.29%), Query Frame = 0

Query: 9   STTWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVLQVEVGEAL 68
           ST W+PP    YKVN + A     K   +G VV +  G V+A +++ +      E+ EA 
Sbjct: 64  STPWRPPISHQYKVNFDGAIFQEAKMGGIGVVVRDQAGMVIATLSQRVITSPSAELIEAR 123

Query: 69  AIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFS 128
           A R  IQ+AME+G   ++ E D+E ++++L+N  +  +  G ++ D + L  +    +F+
Sbjct: 124 AARRAIQFAMEIGILDVQFEGDSETIIRELSNQEVMHNASGLIIEDAKALLHHFRRHLFT 183

Query: 129 WCDRRANSVAHGLARRALEYEDFRCWIEDLP 160
              R  NSVAH LARRAL+  +F  W+ED P
Sbjct: 184 HTRRSGNSVAHALARRALDIPNFSVWMEDAP 214

BLAST of Sed0015376 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 5.5e-07
Identity = 37/151 (24.50%), Postives = 77/151 (50.99%), Query Frame = 0

Query: 3   KNEIVRST--TWKPPTGLNYKVNSNVAFNFAGKKFRMGAVVWNDRGEVMAAVAKPIQQVL 62
           K ++ RS+   W+PP     K N++  +N   ++  +G V+ N++GEV    A+ + ++ 
Sbjct: 409 KPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLK 468

Query: 63  QVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELAT 122
            V   E  A+R  +       +  +  E+D++++++ L N+ I  S L   + D+Q L +
Sbjct: 469 SVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPS-LKPTIQDLQRLLS 528

Query: 123 NLECCIFSWCDRRANSVAHGLARRALEYEDF 152
                 F +  R  N++A  +AR +L + ++
Sbjct: 529 QFTEVKFVFIPREGNTLAERVARESLSFLNY 558

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030934661.19.0e-2037.58uncharacterized protein LOC115960098 [Quercus lobata][more]
XP_023910597.11.3e-1837.01uncharacterized protein LOC112022257 [Quercus suber][more]
XP_023887146.11.7e-1838.85uncharacterized protein LOC111999255 [Quercus suber][more]
XP_023888977.12.2e-1839.58uncharacterized protein LOC112001046 [Quercus suber][more]
XP_023927486.16.5e-1836.42uncharacterized protein LOC112038880 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9FT781.6e-1735.76RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21808 ... [more]
A0A2N9FY903.5e-1733.33RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19997 ... [more]
A0A2N9EMZ04.5e-1736.71Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9HYE34.5e-1736.71Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9GBQ24.5e-1735.76RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24553 ... [more]
Match NameE-valueIdentityDescription
AT4G29090.15.5e-0724.50Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 167..169
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 6..161
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 24..145
e-value: 2.2E-25
score: 88.8
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 20..148
e-value: 1.1E-15
score: 59.9
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 38..143
e-value: 1.32942E-17
score: 72.3468
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 25..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015376.1Sed0015376.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity